Wall clock time and date at job start Tue Mar 31 2020 17:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.45894 * 2 1 4 4 C 1.53042 * 109.46029 * 240.02951 * 2 1 3 5 5 C 1.53188 * 109.31720 * 178.62512 * 4 2 1 6 6 N 1.46932 * 108.77502 * 54.63378 * 5 4 2 7 7 S 1.65592 * 120.63178 * 126.37206 * 6 5 4 8 8 O 1.42100 * 104.28196 * 149.36849 * 7 6 5 9 9 O 1.42102 * 104.28006 * 21.51102 * 7 6 5 10 10 C 1.81401 * 104.44916 * 265.44153 * 7 6 5 11 11 C 1.52999 * 109.47280 * 187.66324 * 10 7 6 12 12 C 1.50700 * 115.54789 * 299.63266 * 11 10 7 13 13 H 1.08006 * 120.00273 * 99.56242 * 12 11 10 14 14 C 1.37877 * 120.00027 * 279.84196 * 12 11 10 15 15 N 1.31514 * 120.00198 * 5.97469 * 14 12 11 16 16 Si 1.86806 * 120.00217 * 185.97321 * 14 12 11 17 17 H 1.48498 * 109.46797 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47343 * 119.99921 * 16 14 12 19 19 H 1.48497 * 109.47038 * 240.00379 * 16 14 12 20 20 C 1.52995 * 117.52305 * 85.33285 * 11 10 7 21 21 C 1.52990 * 60.00120 * 107.48324 * 20 11 10 22 22 C 1.46928 * 118.73421 * 306.64349 * 6 5 4 23 23 H 1.08990 * 109.58949 * 293.56589 * 22 6 5 24 24 C 1.50707 * 109.58271 * 173.14329 * 22 6 5 25 25 O 1.20830 * 119.99940 * 304.06929 * 24 22 6 26 26 O 1.34229 * 119.99923 * 124.07060 * 24 22 6 27 27 C 1.52765 * 109.00769 * 53.31380 * 22 6 5 28 28 H 1.09001 * 109.47021 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47005 * 299.96937 * 1 2 3 30 30 H 1.08998 * 109.47471 * 59.97096 * 1 2 3 31 31 H 1.09006 * 109.50071 * 58.67155 * 4 2 1 32 32 H 1.09002 * 109.52764 * 298.59203 * 4 2 1 33 33 H 1.09005 * 109.58810 * 294.85333 * 5 4 2 34 34 H 1.08999 * 109.71066 * 174.49130 * 5 4 2 35 35 H 1.08994 * 109.47558 * 67.65920 * 10 7 6 36 36 H 1.09005 * 109.46728 * 307.65602 * 10 7 6 37 37 H 0.96997 * 120.00359 * 185.00490 * 15 14 12 38 38 H 1.09000 * 117.50444 * 214.97583 * 20 11 10 39 39 H 1.09003 * 117.49774 * 359.97438 * 20 11 10 40 40 H 1.09006 * 117.50432 * 252.51417 * 21 20 11 41 41 H 1.09007 * 117.50497 * 107.48903 * 21 20 11 42 42 H 0.96694 * 117.00043 * 179.97438 * 26 24 22 43 43 H 1.09000 * 109.56286 * 185.54596 * 27 22 6 44 44 H 1.09001 * 109.38794 * 65.50895 * 27 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0398 -0.7208 -1.2500 5 6 3.5713 -0.6890 -1.2642 6 7 4.0677 -1.2493 0.0002 7 16 5.1653 -2.4891 0.0003 8 8 5.9231 -2.2863 1.1851 9 8 5.7756 -2.4171 -1.2810 10 6 4.1543 -3.9887 0.1402 11 6 5.0654 -5.2010 0.3430 12 6 6.0521 -5.4651 -0.7650 13 1 7.0789 -5.1468 -0.6610 14 6 5.6427 -6.1078 -1.9141 15 7 4.3699 -6.3854 -2.0943 16 14 6.8958 -6.5842 -3.2149 17 1 8.2501 -6.1624 -2.7755 18 1 6.8737 -8.0564 -3.4080 19 1 6.5598 -5.9118 -4.4956 20 6 5.5054 -5.5235 1.7724 21 6 4.4780 -6.4127 1.0694 22 6 3.5669 -0.6926 1.2643 23 1 3.9097 0.3365 1.3716 24 6 4.0748 -1.5200 2.4170 25 8 3.8595 -2.7085 2.4486 26 8 4.7664 -0.9366 3.4085 27 6 2.0396 -0.7208 1.2501 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5134 0.8903 30 1 -0.3634 0.5143 -0.8897 31 1 1.6573 -0.2208 -2.1399 32 1 1.6976 -1.7557 -1.2389 33 1 3.9144 0.3405 -1.3672 34 1 3.9437 -1.2835 -2.0984 35 1 3.5716 -4.1206 -0.7714 36 1 3.4803 -3.8943 0.9918 37 1 4.0906 -6.9011 -2.8670 38 1 6.5086 -5.9266 1.9114 39 1 5.1462 -4.8716 2.5687 40 1 3.4424 -6.3461 1.4031 41 1 4.8050 -7.4009 0.7457 42 1 5.0712 -1.5081 4.1265 43 1 1.6570 -0.2207 2.1398 44 1 1.6969 -1.7555 1.2386 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000515853379.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:43:26 Heat of formation + Delta-G solvation = -159.677020 kcal Electronic energy + Delta-G solvation = -29383.028437 eV Core-core repulsion = 25427.424745 eV Total energy + Delta-G solvation = -3955.603692 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.71259 -39.44263 -38.55078 -38.05453 -37.00643 -36.89964 -34.79416 -34.12991 -32.59260 -29.82155 -28.77840 -27.52441 -25.99604 -24.04853 -23.02073 -22.48620 -21.61178 -20.99228 -19.79058 -19.20663 -18.77757 -18.37890 -17.61568 -17.14181 -16.85335 -16.60773 -16.17946 -15.80079 -15.57508 -15.32572 -15.22144 -15.03732 -14.83340 -14.44982 -14.06340 -13.75699 -13.60708 -13.19972 -13.15730 -12.98902 -12.95119 -12.85768 -12.72903 -12.59595 -12.55037 -12.38459 -12.32955 -12.24689 -12.03436 -11.90377 -11.70303 -11.52922 -11.27026 -11.21580 -10.79898 -10.58813 -10.23848 -9.81766 -8.23279 -6.39443 -0.60534 1.01695 1.33472 1.37297 1.47979 1.74590 2.06602 2.37183 2.92204 3.04363 3.25111 3.40269 3.58064 3.78387 3.93027 3.95228 4.05625 4.19008 4.23789 4.30208 4.36041 4.59012 4.60139 4.63481 4.68530 4.77109 4.83500 4.88992 4.91377 4.96576 4.99476 5.08642 5.15566 5.22544 5.23591 5.39506 5.45167 5.54027 5.55911 5.58361 5.66563 5.75964 6.21230 6.67945 6.94961 7.34281 8.84995 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.014606 B = 0.005545 C = 0.004873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1916.574811 B = 5047.957897 C = 5744.104166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.080 4.080 3 H 0.099 0.901 4 C -0.133 4.133 5 C 0.112 3.888 6 N -0.997 5.997 7 S 2.615 3.385 8 O -0.986 6.986 9 O -0.989 6.989 10 C -0.541 4.541 11 C 0.019 3.981 12 C -0.539 4.539 13 H 0.045 0.955 14 C 0.043 3.957 15 N -0.891 5.891 16 Si 0.936 3.064 17 H -0.273 1.273 18 H -0.266 1.266 19 H -0.275 1.275 20 C -0.187 4.187 21 C -0.142 4.142 22 C 0.162 3.838 23 H 0.134 0.866 24 C 0.476 3.524 25 O -0.536 6.536 26 O -0.496 6.496 27 C -0.120 4.120 28 H 0.045 0.955 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.103 0.897 32 H 0.054 0.946 33 H 0.101 0.899 34 H 0.076 0.924 35 H 0.108 0.892 36 H 0.141 0.859 37 H 0.266 0.734 38 H 0.079 0.921 39 H 0.096 0.904 40 H 0.079 0.921 41 H 0.068 0.932 42 H 0.428 0.572 43 H 0.109 0.891 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.887 16.161 6.595 20.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.099 4.099 3 H 0.117 0.883 4 C -0.172 4.172 5 C -0.012 4.012 6 N -0.837 5.837 7 S 2.715 3.285 8 O -0.976 6.976 9 O -0.979 6.979 10 C -0.674 4.674 11 C 0.017 3.983 12 C -0.576 4.576 13 H 0.063 0.937 14 C -0.160 4.160 15 N -0.527 5.527 16 Si 0.760 3.240 17 H -0.197 1.197 18 H -0.191 1.191 19 H -0.201 1.201 20 C -0.225 4.225 21 C -0.182 4.182 22 C 0.055 3.945 23 H 0.152 0.848 24 C 0.319 3.681 25 O -0.428 6.428 26 O -0.308 6.308 27 C -0.159 4.159 28 H 0.064 0.936 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.121 0.879 32 H 0.073 0.927 33 H 0.119 0.881 34 H 0.094 0.906 35 H 0.127 0.873 36 H 0.159 0.841 37 H 0.076 0.924 38 H 0.097 0.903 39 H 0.114 0.886 40 H 0.097 0.903 41 H 0.086 0.914 42 H 0.289 0.711 43 H 0.127 0.873 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -9.240 16.238 6.058 19.640 hybrid contribution 0.501 -1.665 -0.304 1.765 sum -8.740 14.572 5.753 17.940 Atomic orbital electron populations 1.21795 0.93420 1.01883 1.02987 1.21061 0.96688 1.00055 0.92071 0.88268 1.22087 0.93265 1.01663 1.00198 1.21759 0.95867 1.00826 0.82701 1.57841 1.62954 1.51335 1.11602 1.04638 0.75287 0.75812 0.72731 1.93381 1.69240 1.85259 1.49765 1.93455 1.74818 1.86547 1.43098 1.29996 1.12324 1.15106 1.09985 1.18331 0.96613 0.92690 0.90636 1.20767 0.94731 1.41292 1.00830 0.93678 1.25556 0.96772 0.94889 0.98812 1.70056 1.15190 1.37686 1.29751 0.85849 0.80006 0.78508 0.79603 1.19711 1.19070 1.20082 1.23096 0.98856 1.04471 0.96030 1.22466 0.96319 0.95327 1.04055 1.20634 0.97141 0.98404 0.78319 0.84802 1.23475 0.73670 0.86770 0.84138 1.90683 1.56687 1.17571 1.77836 1.84337 1.65516 1.46663 1.34246 1.22016 0.89480 1.02942 1.01478 0.93566 0.91232 0.91283 0.87862 0.92715 0.88063 0.90562 0.87343 0.84081 0.92448 0.90286 0.88619 0.90264 0.91353 0.71058 0.87256 0.91707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 9.19 71.98 0.66 -1.06 16 2 C -0.08 -1.17 2.68 -10.77 -0.03 -1.20 16 3 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 4 C -0.13 -2.56 5.36 30.67 0.16 -2.40 16 5 C 0.11 2.85 6.34 86.36 0.55 3.39 16 6 N -1.00 -31.13 3.22 -495.38 -1.60 -32.72 16 7 S 2.62 115.74 4.37 -56.49 -0.25 115.49 16 8 O -0.99 -45.20 14.26 -117.39 -1.67 -46.87 16 9 O -0.99 -51.00 16.15 -127.65 -2.06 -53.06 16 10 C -0.54 -25.39 5.49 71.98 0.40 -25.00 16 11 C 0.02 1.02 1.31 -52.93 -0.07 0.96 16 12 C -0.54 -31.62 7.94 25.60 0.20 -31.42 16 13 H 0.04 2.75 7.82 -2.91 -0.02 2.72 16 14 C 0.04 2.45 5.42 84.65 0.46 2.91 16 15 N -0.89 -51.18 13.09 21.45 0.28 -50.90 16 16 Si 0.94 45.59 29.55 68.60 2.03 47.62 16 17 H -0.27 -13.33 7.11 99.48 0.71 -12.62 16 18 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 19 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 20 C -0.19 -8.89 9.95 30.59 0.30 -8.59 16 21 C -0.14 -6.99 9.72 30.59 0.30 -6.69 16 22 C 0.16 3.93 3.30 44.09 0.15 4.08 16 23 H 0.13 2.45 8.14 -2.39 -0.02 2.43 16 24 C 0.48 13.97 4.45 71.24 0.32 14.29 16 25 O -0.54 -18.95 11.73 29.11 0.34 -18.61 16 26 O -0.50 -12.00 13.39 -47.83 -0.64 -12.64 16 27 C -0.12 -2.19 4.60 30.53 0.14 -2.05 16 28 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.07 0.69 8.14 -2.39 -0.02 0.68 16 31 H 0.10 1.47 8.14 -2.38 -0.02 1.45 16 32 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.10 1.95 8.14 -2.38 -0.02 1.93 16 34 H 0.08 2.34 6.96 -2.39 -0.02 2.32 16 35 H 0.11 5.39 8.11 -2.39 -0.02 5.37 16 36 H 0.14 6.08 5.36 -2.39 -0.01 6.07 16 37 H 0.27 14.37 8.32 -92.71 -0.77 13.60 16 38 H 0.08 3.70 8.14 -2.39 -0.02 3.68 16 39 H 0.10 4.23 7.29 -2.39 -0.02 4.22 16 40 H 0.08 3.60 8.14 -2.38 -0.02 3.58 16 41 H 0.07 3.49 8.14 -2.38 -0.02 3.47 16 42 H 0.43 7.53 9.10 -74.06 -0.67 6.86 16 43 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 44 H 0.06 1.45 8.02 -2.39 -0.02 1.43 16 Total: -1.00 -76.53 361.52 0.30 -76.23 By element: Atomic # 1 Polarization: 27.89 SS G_CDS: 0.33 Total: 28.23 kcal Atomic # 6 Polarization: -56.31 SS G_CDS: 3.54 Total: -52.77 kcal Atomic # 7 Polarization: -82.30 SS G_CDS: -1.32 Total: -83.62 kcal Atomic # 8 Polarization: -127.14 SS G_CDS: -4.03 Total: -131.18 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.62 kcal Atomic # 16 Polarization: 115.74 SS G_CDS: -0.25 Total: 115.49 kcal Total: -76.53 0.30 -76.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000515853379.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.448 kcal (2) G-P(sol) polarization free energy of solvation -76.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds