Wall clock time and date at job start Tue Mar 31 2020 16:06:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 110.41169 * 2 1 4 4 C 1.55133 * 110.49584 * 237.65108 * 2 1 3 5 5 C 1.55152 * 101.48426 * 278.45178 * 4 2 1 6 6 C 1.54322 * 102.94332 * 324.33271 * 5 4 2 7 7 H 1.09003 * 109.87887 * 262.77522 * 6 5 4 8 8 C 1.50704 * 110.01047 * 141.68757 * 6 5 4 9 9 O 1.20832 * 119.99448 * 242.11820 * 8 6 5 10 10 O 1.34221 * 120.00293 * 62.10916 * 8 6 5 11 11 N 1.47016 * 107.27152 * 22.19641 * 6 5 4 12 12 S 1.65599 * 125.64924 * 181.02658 * 11 6 5 13 13 O 1.42102 * 104.27604 * 333.95030 * 12 11 6 14 14 O 1.42103 * 104.27780 * 206.09202 * 12 11 6 15 15 C 1.81401 * 104.45174 * 90.02055 * 12 11 6 16 16 C 1.53002 * 109.47056 * 174.48135 * 15 12 11 17 17 C 1.50705 * 115.54926 * 65.21790 * 16 15 12 18 18 H 1.08003 * 119.99428 * 264.78382 * 17 16 15 19 19 C 1.37872 * 120.00319 * 84.77995 * 17 16 15 20 20 N 1.31522 * 119.99820 * 352.22911 * 19 17 16 21 21 Si 1.86803 * 120.00063 * 172.22623 * 19 17 16 22 22 H 1.48495 * 109.47010 * 90.00476 * 21 19 17 23 23 H 1.48502 * 109.46960 * 210.00106 * 21 19 17 24 24 H 1.48496 * 109.47194 * 330.00140 * 21 19 17 25 25 C 1.52995 * 117.50043 * 279.54605 * 16 15 12 26 26 C 1.52999 * 117.49904 * 210.88400 * 16 15 12 27 27 H 1.09000 * 109.47478 * 297.69838 * 1 2 3 28 28 H 1.08996 * 109.47610 * 57.70229 * 1 2 3 29 29 H 1.09009 * 109.47216 * 177.70358 * 1 2 3 30 30 H 1.09000 * 109.46846 * 182.29718 * 3 2 1 31 31 H 1.09002 * 109.47500 * 302.30029 * 3 2 1 32 32 H 1.09006 * 109.47186 * 62.29803 * 3 2 1 33 33 H 1.08997 * 111.18976 * 160.34499 * 4 2 1 34 34 H 1.09006 * 110.90475 * 36.43066 * 4 2 1 35 35 H 1.09006 * 110.71833 * 205.96603 * 5 4 2 36 36 H 1.09001 * 110.87205 * 82.76944 * 5 4 2 37 37 H 0.96703 * 116.99853 * 179.97438 * 10 8 6 38 38 H 1.08999 * 109.46961 * 294.47989 * 15 12 11 39 39 H 1.09003 * 109.47197 * 54.48386 * 15 12 11 40 40 H 0.96996 * 119.99569 * 185.02856 * 20 19 17 41 41 H 1.08997 * 117.49850 * 359.97438 * 25 16 15 42 42 H 1.08997 * 117.50336 * 145.02313 * 25 16 15 43 43 H 1.08999 * 117.49928 * 214.98326 * 26 16 15 44 44 H 1.08996 * 117.49583 * 359.97438 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0636 1.4339 0.0000 4 6 2.0732 -0.7775 -1.2276 5 6 1.9720 -2.2448 -0.7334 6 6 2.3092 -2.1279 0.7679 7 1 3.3603 -2.3659 0.9314 8 6 1.4413 -3.0664 1.5660 9 8 0.6739 -2.6267 2.3893 10 8 1.5206 -4.3907 1.3623 11 7 2.0431 -0.7385 1.1682 12 16 2.2746 -0.1091 2.6823 13 8 2.1574 -1.2290 3.5491 14 8 1.3571 0.9736 2.7558 15 6 3.9819 0.5037 2.6615 16 6 4.2761 1.2381 3.9712 17 6 4.2567 0.3849 5.2133 18 1 3.3596 0.3226 5.8115 19 6 5.3839 -0.3159 5.5860 20 7 6.4239 -0.3642 4.7823 21 14 5.4342 -1.1969 7.2325 22 1 4.9294 -2.5836 7.0675 23 1 6.8326 -1.2353 7.7308 24 1 4.5808 -0.4722 8.2079 25 6 3.7844 2.6813 4.0977 26 6 5.2777 2.3937 3.9235 27 1 -0.3634 0.4777 0.9099 28 1 -0.3634 0.5491 -0.8686 29 1 -0.3634 -1.0269 -0.0412 30 1 3.1527 1.4162 -0.0412 31 1 1.6757 1.9660 -0.8686 32 1 1.7426 1.9411 0.9099 33 1 3.1076 -0.5069 -1.4392 34 1 1.4419 -0.6151 -2.1013 35 1 2.7001 -2.8749 -1.2444 36 1 0.9630 -2.6329 -0.8730 37 1 0.9444 -4.9527 1.8983 38 1 4.6681 -0.3363 2.5540 39 1 4.1119 1.1888 1.8237 40 1 7.1881 -0.9161 5.0107 41 1 3.2516 3.1078 3.2478 42 1 3.4472 3.0140 5.0793 43 1 5.9223 2.5371 4.7907 44 1 5.7273 2.6304 2.9592 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000568768674.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:06:44 Heat of formation + Delta-G solvation = -129.818179 kcal Electronic energy + Delta-G solvation = -29304.955032 eV Core-core repulsion = 25350.646117 eV Total energy + Delta-G solvation = -3954.308915 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 1.90 seconds Orbital eigenvalues (eV) -40.46018 -38.68836 -36.76833 -36.28631 -35.74083 -34.91729 -32.57015 -32.04064 -30.98398 -28.27791 -27.19618 -26.68986 -25.44201 -22.79025 -21.28075 -21.18354 -20.69277 -19.34628 -17.92468 -17.85160 -17.03058 -16.64219 -16.27853 -15.61812 -15.14335 -14.91657 -14.72143 -14.51057 -14.12159 -13.90605 -13.64684 -13.46555 -13.09018 -12.92219 -12.64816 -12.23852 -12.11375 -11.90647 -11.83822 -11.78694 -11.51952 -11.33916 -11.14913 -11.09695 -10.99062 -10.93824 -10.91365 -10.77003 -10.52628 -10.46135 -10.40328 -10.21800 -10.05720 -9.70901 -8.99425 -8.94078 -8.55991 -8.07582 -6.13960 -4.23921 1.01787 2.49989 3.00914 3.30885 3.36359 3.41727 3.42112 4.28877 4.31698 4.37909 4.65188 4.84317 4.98338 5.02321 5.06660 5.13247 5.19132 5.21623 5.38982 5.49539 5.55699 5.58329 5.66913 5.68944 5.74011 5.88474 5.92102 5.95556 6.01685 6.16613 6.28770 6.34848 6.41163 6.46740 6.60891 6.67294 6.71850 6.73351 6.98497 7.24883 7.38739 7.81057 8.14678 8.20803 8.81562 9.47043 10.93745 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.014237 B = 0.005802 C = 0.004771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.266207 B = 4824.540196 C = 5867.569149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.176 3.824 3 C -0.189 4.189 4 C -0.122 4.122 5 C -0.113 4.113 6 C 0.165 3.835 7 H 0.113 0.887 8 C 0.455 3.545 9 O -0.472 6.472 10 O -0.521 6.521 11 N -0.994 5.994 12 S 2.618 3.382 13 O -0.928 6.928 14 O -0.962 6.962 15 C -0.558 4.558 16 C 0.044 3.956 17 C -0.515 4.515 18 H 0.068 0.932 19 C 0.082 3.918 20 N -0.875 5.875 21 Si 0.890 3.110 22 H -0.275 1.275 23 H -0.284 1.284 24 H -0.269 1.269 25 C -0.208 4.208 26 C -0.141 4.141 27 H 0.073 0.927 28 H 0.064 0.936 29 H 0.054 0.946 30 H 0.065 0.935 31 H 0.076 0.924 32 H 0.089 0.911 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.093 0.907 36 H 0.079 0.921 37 H 0.407 0.593 38 H 0.131 0.869 39 H 0.098 0.902 40 H 0.263 0.737 41 H 0.075 0.925 42 H 0.086 0.914 43 H 0.086 0.914 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.304 -2.815 -15.682 17.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.089 3.911 3 C -0.246 4.246 4 C -0.161 4.161 5 C -0.151 4.151 6 C 0.056 3.944 7 H 0.131 0.869 8 C 0.292 3.708 9 O -0.355 6.355 10 O -0.333 6.333 11 N -0.829 5.829 12 S 2.717 3.283 13 O -0.918 6.918 14 O -0.953 6.953 15 C -0.690 4.690 16 C 0.042 3.958 17 C -0.552 4.552 18 H 0.086 0.914 19 C -0.123 4.123 20 N -0.511 5.511 21 Si 0.717 3.283 22 H -0.201 1.201 23 H -0.210 1.210 24 H -0.194 1.194 25 C -0.246 4.246 26 C -0.180 4.180 27 H 0.092 0.908 28 H 0.083 0.917 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.095 0.905 32 H 0.108 0.892 33 H 0.102 0.898 34 H 0.103 0.897 35 H 0.112 0.888 36 H 0.098 0.902 37 H 0.265 0.735 38 H 0.149 0.851 39 H 0.117 0.883 40 H 0.072 0.928 41 H 0.093 0.907 42 H 0.105 0.895 43 H 0.104 0.896 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.720 -2.429 -14.887 16.514 hybrid contribution 0.470 -0.935 0.946 1.411 sum -6.250 -3.364 -13.942 15.645 Atomic orbital electron populations 1.22178 0.94221 1.02094 1.03120 1.20965 0.93952 0.91777 0.84406 1.22515 1.01694 0.95137 1.05303 1.22963 1.02382 0.93647 0.97072 1.22562 1.03257 0.98176 0.91147 1.20652 0.98474 0.80817 0.94494 0.86923 1.23830 0.83046 0.81803 0.82111 1.90792 1.36156 1.77364 1.31213 1.84465 1.64984 1.19213 1.64663 1.59374 1.80048 1.14925 1.28507 1.05150 0.77822 0.74464 0.70896 1.93578 1.86208 1.50664 1.61351 1.93451 1.60919 1.56326 1.84555 1.30154 1.21970 1.11236 1.05685 1.18268 1.01001 0.85999 0.90575 1.20532 0.98699 1.28727 1.07286 0.91417 1.24943 0.94923 0.95317 0.97088 1.69981 1.06433 1.38091 1.36585 0.86594 0.77224 0.80449 0.84032 1.20083 1.20996 1.19376 1.23197 0.98016 1.01904 1.01446 1.22553 0.90772 1.04134 1.00529 0.90824 0.91749 0.92661 0.91598 0.90463 0.89205 0.89795 0.89673 0.88828 0.90248 0.73456 0.85115 0.88337 0.92755 0.90672 0.89522 0.89563 0.91512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.02 8.86 37.16 0.33 -1.69 16 2 C 0.18 2.26 0.77 -130.19 -0.10 2.16 16 3 C -0.19 -2.34 7.94 37.16 0.29 -2.04 16 4 C -0.12 -1.09 5.99 -24.46 -0.15 -1.23 16 5 C -0.11 -1.06 6.06 -24.90 -0.15 -1.21 16 6 C 0.16 2.31 3.57 -68.11 -0.24 2.07 16 7 H 0.11 1.44 8.14 -51.93 -0.42 1.02 16 8 C 0.45 7.34 6.95 36.01 0.25 7.59 16 9 O -0.47 -9.69 14.45 -26.61 -0.38 -10.08 16 10 O -0.52 -6.41 13.40 -39.23 -0.53 -6.94 16 11 N -0.99 -16.21 2.59 -91.98 -0.24 -16.44 16 12 S 2.62 56.53 4.55 -107.50 -0.49 56.04 16 13 O -0.93 -23.80 14.20 -66.97 -0.95 -24.75 16 14 O -0.96 -21.80 14.90 -57.54 -0.86 -22.66 16 15 C -0.56 -11.99 6.03 37.16 0.22 -11.77 16 16 C 0.04 1.09 1.32 -155.66 -0.21 0.88 16 17 C -0.52 -14.45 8.15 -34.44 -0.28 -14.73 16 18 H 0.07 1.96 7.83 -52.48 -0.41 1.55 16 19 C 0.08 2.28 5.38 -17.82 -0.10 2.18 16 20 N -0.88 -24.26 12.98 55.43 0.72 -23.54 16 21 Si 0.89 21.81 29.55 -169.99 -5.02 16.79 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 25 C -0.21 -4.64 9.96 -26.70 -0.27 -4.90 16 26 C -0.14 -3.22 9.49 -26.69 -0.25 -3.48 16 27 H 0.07 1.15 7.51 -51.93 -0.39 0.76 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.05 0.69 7.37 -51.92 -0.38 0.31 16 30 H 0.07 0.75 7.16 -51.93 -0.37 0.38 16 31 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.09 1.36 5.87 -51.93 -0.30 1.06 16 33 H 0.08 0.67 8.06 -51.93 -0.42 0.25 16 34 H 0.08 0.58 8.04 -51.93 -0.42 0.16 16 35 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.08 0.71 7.41 -51.93 -0.38 0.33 16 37 H 0.41 3.49 9.10 45.56 0.41 3.90 16 38 H 0.13 2.92 8.14 -51.92 -0.42 2.49 16 39 H 0.10 1.77 6.76 -51.92 -0.35 1.42 16 40 H 0.26 6.93 8.32 -40.82 -0.34 6.59 16 41 H 0.07 1.51 8.14 -51.93 -0.42 1.08 16 42 H 0.09 1.91 8.14 -51.93 -0.42 1.49 16 43 H 0.09 2.08 8.14 -51.93 -0.42 1.66 16 44 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 LS Contribution 365.12 15.07 5.50 5.50 Total: -1.00 -36.10 365.12 -8.85 -44.95 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: -5.96 Total: 7.31 kcal Atomic # 6 Polarization: -25.52 SS G_CDS: -0.64 Total: -26.17 kcal Atomic # 7 Polarization: -40.47 SS G_CDS: 0.48 Total: -39.99 kcal Atomic # 8 Polarization: -61.71 SS G_CDS: -2.72 Total: -64.43 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Atomic # 16 Polarization: 56.53 SS G_CDS: -0.49 Total: 56.04 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -36.10 -8.85 -44.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568768674.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.871 kcal (2) G-P(sol) polarization free energy of solvation -36.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.90 seconds