Wall clock time and date at job start Tue Mar 31 2020 16:06:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 110.41169 * 2 1 4 4 C 1.55133 * 110.49584 * 237.65108 * 2 1 3 5 5 C 1.55152 * 101.48426 * 278.45178 * 4 2 1 6 6 C 1.54322 * 102.94332 * 324.33271 * 5 4 2 7 7 H 1.09003 * 109.87887 * 262.77522 * 6 5 4 8 8 C 1.50704 * 110.01047 * 141.68757 * 6 5 4 9 9 O 1.20832 * 119.99448 * 242.11820 * 8 6 5 10 10 O 1.34221 * 120.00293 * 62.10916 * 8 6 5 11 11 N 1.47016 * 107.27152 * 22.19641 * 6 5 4 12 12 S 1.65599 * 125.64924 * 181.02658 * 11 6 5 13 13 O 1.42102 * 104.27604 * 333.95030 * 12 11 6 14 14 O 1.42103 * 104.27780 * 206.09202 * 12 11 6 15 15 C 1.81401 * 104.45174 * 90.02055 * 12 11 6 16 16 C 1.53002 * 109.47056 * 174.48135 * 15 12 11 17 17 C 1.50705 * 115.54926 * 65.21790 * 16 15 12 18 18 H 1.08003 * 119.99428 * 264.78382 * 17 16 15 19 19 C 1.37872 * 120.00319 * 84.77995 * 17 16 15 20 20 N 1.31522 * 119.99820 * 352.22911 * 19 17 16 21 21 Si 1.86803 * 120.00063 * 172.22623 * 19 17 16 22 22 H 1.48495 * 109.47010 * 90.00476 * 21 19 17 23 23 H 1.48502 * 109.46960 * 210.00106 * 21 19 17 24 24 H 1.48496 * 109.47194 * 330.00140 * 21 19 17 25 25 C 1.52995 * 117.50043 * 279.54605 * 16 15 12 26 26 C 1.52999 * 117.49904 * 210.88400 * 16 15 12 27 27 H 1.09000 * 109.47478 * 297.69838 * 1 2 3 28 28 H 1.08996 * 109.47610 * 57.70229 * 1 2 3 29 29 H 1.09009 * 109.47216 * 177.70358 * 1 2 3 30 30 H 1.09000 * 109.46846 * 182.29718 * 3 2 1 31 31 H 1.09002 * 109.47500 * 302.30029 * 3 2 1 32 32 H 1.09006 * 109.47186 * 62.29803 * 3 2 1 33 33 H 1.08997 * 111.18976 * 160.34499 * 4 2 1 34 34 H 1.09006 * 110.90475 * 36.43066 * 4 2 1 35 35 H 1.09006 * 110.71833 * 205.96603 * 5 4 2 36 36 H 1.09001 * 110.87205 * 82.76944 * 5 4 2 37 37 H 0.96703 * 116.99853 * 179.97438 * 10 8 6 38 38 H 1.08999 * 109.46961 * 294.47989 * 15 12 11 39 39 H 1.09003 * 109.47197 * 54.48386 * 15 12 11 40 40 H 0.96996 * 119.99569 * 185.02856 * 20 19 17 41 41 H 1.08997 * 117.49850 * 359.97438 * 25 16 15 42 42 H 1.08997 * 117.50336 * 145.02313 * 25 16 15 43 43 H 1.08999 * 117.49928 * 214.98326 * 26 16 15 44 44 H 1.08996 * 117.49583 * 359.97438 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0636 1.4339 0.0000 4 6 2.0732 -0.7775 -1.2276 5 6 1.9720 -2.2448 -0.7334 6 6 2.3092 -2.1279 0.7679 7 1 3.3603 -2.3659 0.9314 8 6 1.4413 -3.0664 1.5660 9 8 0.6739 -2.6267 2.3893 10 8 1.5206 -4.3907 1.3623 11 7 2.0431 -0.7385 1.1682 12 16 2.2746 -0.1091 2.6823 13 8 2.1574 -1.2290 3.5491 14 8 1.3571 0.9736 2.7558 15 6 3.9819 0.5037 2.6615 16 6 4.2761 1.2381 3.9712 17 6 4.2567 0.3849 5.2133 18 1 3.3596 0.3226 5.8115 19 6 5.3839 -0.3159 5.5860 20 7 6.4239 -0.3642 4.7823 21 14 5.4342 -1.1969 7.2325 22 1 4.9294 -2.5836 7.0675 23 1 6.8326 -1.2353 7.7308 24 1 4.5808 -0.4722 8.2079 25 6 3.7844 2.6813 4.0977 26 6 5.2777 2.3937 3.9235 27 1 -0.3634 0.4777 0.9099 28 1 -0.3634 0.5491 -0.8686 29 1 -0.3634 -1.0269 -0.0412 30 1 3.1527 1.4162 -0.0412 31 1 1.6757 1.9660 -0.8686 32 1 1.7426 1.9411 0.9099 33 1 3.1076 -0.5069 -1.4392 34 1 1.4419 -0.6151 -2.1013 35 1 2.7001 -2.8749 -1.2444 36 1 0.9630 -2.6329 -0.8730 37 1 0.9444 -4.9527 1.8983 38 1 4.6681 -0.3363 2.5540 39 1 4.1119 1.1888 1.8237 40 1 7.1881 -0.9161 5.0107 41 1 3.2516 3.1078 3.2478 42 1 3.4472 3.0140 5.0793 43 1 5.9223 2.5371 4.7907 44 1 5.7273 2.6304 2.9592 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000568768674.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:06:41 Heat of formation + Delta-G solvation = -155.816957 kcal Electronic energy + Delta-G solvation = -29306.082424 eV Core-core repulsion = 25350.646117 eV Total energy + Delta-G solvation = -3955.436307 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.59807 -39.75237 -38.61476 -37.95877 -37.00629 -36.65971 -34.13269 -33.57503 -31.98826 -29.95127 -28.23685 -27.70931 -27.49929 -23.68640 -23.03447 -22.46713 -21.79356 -21.15036 -19.39326 -19.04038 -18.51677 -18.16696 -17.68117 -16.99432 -16.73047 -16.60407 -16.28585 -15.89797 -15.66616 -15.18549 -14.90931 -14.76610 -14.50115 -13.94172 -13.81554 -13.73226 -13.55606 -13.22194 -13.17924 -13.04542 -12.92110 -12.87700 -12.77049 -12.64649 -12.51695 -12.40853 -12.36280 -12.26041 -12.19626 -11.91808 -11.68117 -11.57563 -11.41060 -11.30495 -10.91317 -10.59466 -10.29033 -9.84085 -8.24276 -6.38362 -0.59214 1.28755 1.32460 1.35100 1.44037 1.79549 2.16982 2.35116 3.00073 3.10541 3.21929 3.35412 3.36914 3.71314 3.96145 3.98329 4.08136 4.16439 4.19749 4.29221 4.45104 4.48285 4.54775 4.60387 4.70425 4.76992 4.81691 4.87112 4.93780 4.94485 5.04842 5.10404 5.16605 5.17617 5.26745 5.41696 5.46378 5.49668 5.55863 5.60484 5.66730 5.67641 6.18374 6.66486 7.03296 7.33327 8.82827 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.014237 B = 0.005802 C = 0.004771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.266207 B = 4824.540196 C = 5867.569149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.161 3.839 3 C -0.194 4.194 4 C -0.108 4.108 5 C -0.102 4.102 6 C 0.149 3.851 7 H 0.124 0.876 8 C 0.452 3.548 9 O -0.527 6.527 10 O -0.507 6.507 11 N -0.994 5.994 12 S 2.628 3.372 13 O -0.981 6.981 14 O -0.985 6.985 15 C -0.549 4.549 16 C 0.010 3.990 17 C -0.537 4.537 18 H 0.041 0.959 19 C 0.045 3.955 20 N -0.888 5.888 21 Si 0.931 3.069 22 H -0.280 1.280 23 H -0.266 1.266 24 H -0.272 1.272 25 C -0.199 4.199 26 C -0.133 4.133 27 H 0.032 0.968 28 H 0.099 0.901 29 H 0.052 0.948 30 H 0.076 0.924 31 H 0.110 0.890 32 H 0.056 0.944 33 H 0.102 0.898 34 H 0.118 0.882 35 H 0.127 0.873 36 H 0.084 0.916 37 H 0.423 0.577 38 H 0.120 0.880 39 H 0.134 0.866 40 H 0.267 0.733 41 H 0.100 0.900 42 H 0.079 0.921 43 H 0.067 0.933 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.534 -2.976 -19.133 20.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.075 3.925 3 C -0.251 4.251 4 C -0.146 4.146 5 C -0.141 4.141 6 C 0.040 3.960 7 H 0.141 0.859 8 C 0.292 3.708 9 O -0.415 6.415 10 O -0.320 6.320 11 N -0.831 5.831 12 S 2.728 3.272 13 O -0.971 6.971 14 O -0.975 6.975 15 C -0.682 4.682 16 C 0.007 3.993 17 C -0.575 4.575 18 H 0.059 0.941 19 C -0.158 4.158 20 N -0.524 5.524 21 Si 0.756 3.244 22 H -0.206 1.206 23 H -0.191 1.191 24 H -0.196 1.196 25 C -0.236 4.236 26 C -0.172 4.172 27 H 0.051 0.949 28 H 0.118 0.882 29 H 0.072 0.928 30 H 0.095 0.905 31 H 0.129 0.871 32 H 0.075 0.925 33 H 0.120 0.880 34 H 0.137 0.863 35 H 0.145 0.855 36 H 0.103 0.897 37 H 0.283 0.717 38 H 0.138 0.862 39 H 0.152 0.848 40 H 0.076 0.924 41 H 0.118 0.882 42 H 0.098 0.902 43 H 0.086 0.914 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -5.940 -2.602 -18.336 19.449 hybrid contribution 0.165 -0.930 1.975 2.190 sum -5.775 -3.532 -16.361 17.706 Atomic orbital electron populations 1.22193 0.94683 1.02061 1.02654 1.21430 0.93837 0.92460 0.84759 1.22580 1.02514 0.94870 1.05175 1.23012 1.03951 0.91863 0.95798 1.22679 1.04611 0.99442 0.87344 1.21185 0.98549 0.78960 0.97287 0.85890 1.24431 0.82260 0.82876 0.81239 1.90781 1.38711 1.78380 1.33636 1.84426 1.65020 1.17954 1.64556 1.58899 1.79871 1.16504 1.27819 1.04406 0.77608 0.73503 0.71717 1.93507 1.86817 1.52358 1.64436 1.93416 1.61479 1.57024 1.85604 1.29991 1.21589 1.11279 1.05307 1.18385 1.03261 0.86767 0.90858 1.20664 0.97966 1.29987 1.08841 0.94123 1.25471 0.94843 0.95985 0.99487 1.70003 1.06586 1.38487 1.37359 0.85963 0.77973 0.79138 0.81279 1.20557 1.19065 1.19625 1.23239 0.97951 1.00241 1.02144 1.22525 0.90715 1.02898 1.01061 0.94882 0.88211 0.92842 0.90506 0.87107 0.92548 0.87978 0.86337 0.85470 0.89718 0.71652 0.86192 0.84779 0.92370 0.88212 0.90224 0.91425 0.88909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.79 8.86 71.98 0.64 -3.15 16 2 C 0.16 3.71 0.77 4.16 0.00 3.71 16 3 C -0.19 -4.26 7.94 71.98 0.57 -3.69 16 4 C -0.11 -1.38 5.99 32.06 0.19 -1.18 16 5 C -0.10 -1.50 6.06 31.78 0.19 -1.31 16 6 C 0.15 3.93 3.57 44.60 0.16 4.09 16 7 H 0.12 2.95 8.14 -2.39 -0.02 2.93 16 8 C 0.45 14.53 6.95 71.24 0.49 15.02 16 9 O -0.53 -22.55 14.45 29.45 0.43 -22.12 16 10 O -0.51 -11.90 13.40 -51.33 -0.69 -12.59 16 11 N -0.99 -31.55 2.59 -444.91 -1.15 -32.70 16 12 S 2.63 116.17 4.55 -56.49 -0.26 115.91 16 13 O -0.98 -52.88 14.20 -118.63 -1.68 -54.57 16 14 O -0.98 -46.20 14.90 -127.65 -1.90 -48.10 16 15 C -0.55 -23.45 6.03 71.98 0.43 -23.02 16 16 C 0.01 0.48 1.32 -52.93 -0.07 0.41 16 17 C -0.54 -31.09 8.15 25.60 0.21 -30.88 16 18 H 0.04 2.49 7.83 -2.91 -0.02 2.47 16 19 C 0.05 2.56 5.38 84.65 0.46 3.01 16 20 N -0.89 -49.40 12.98 21.45 0.28 -49.13 16 21 Si 0.93 45.37 29.55 68.60 2.03 47.40 16 22 H -0.28 -13.74 7.11 99.48 0.71 -13.03 16 23 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 24 H -0.27 -13.19 7.11 99.48 0.71 -12.48 16 25 C -0.20 -8.80 9.96 30.62 0.30 -8.49 16 26 C -0.13 -6.01 9.49 30.62 0.29 -5.71 16 27 H 0.03 1.05 7.51 -2.39 -0.02 1.03 16 28 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.05 1.27 7.37 -2.38 -0.02 1.26 16 30 H 0.08 1.49 7.16 -2.39 -0.02 1.47 16 31 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.06 1.65 5.87 -2.38 -0.01 1.63 16 33 H 0.10 1.01 8.06 -2.39 -0.02 0.99 16 34 H 0.12 0.83 8.04 -2.38 -0.02 0.81 16 35 H 0.13 1.09 8.14 -2.38 -0.02 1.07 16 36 H 0.08 1.19 7.41 -2.39 -0.02 1.17 16 37 H 0.42 6.96 9.10 -74.06 -0.67 6.29 16 38 H 0.12 5.36 8.14 -2.39 -0.02 5.34 16 39 H 0.13 4.57 6.76 -2.39 -0.02 4.56 16 40 H 0.27 14.02 8.32 -92.71 -0.77 13.25 16 41 H 0.10 3.88 8.14 -2.39 -0.02 3.86 16 42 H 0.08 3.58 8.14 -2.39 -0.02 3.56 16 43 H 0.07 3.27 8.14 -2.39 -0.02 3.25 16 44 H 0.09 3.65 8.14 -2.39 -0.02 3.63 16 Total: -1.00 -83.46 365.12 1.26 -82.20 By element: Atomic # 1 Polarization: 24.56 SS G_CDS: 0.34 Total: 24.90 kcal Atomic # 6 Polarization: -55.08 SS G_CDS: 3.88 Total: -51.21 kcal Atomic # 7 Polarization: -80.95 SS G_CDS: -0.87 Total: -81.83 kcal Atomic # 8 Polarization: -133.53 SS G_CDS: -3.85 Total: -137.38 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Atomic # 16 Polarization: 116.17 SS G_CDS: -0.26 Total: 115.91 kcal Total: -83.46 1.26 -82.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568768674.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.618 kcal (2) G-P(sol) polarization free energy of solvation -83.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds