Wall clock time and date at job start Tue Mar 31 2020 17:43:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.45817 * 2 1 4 4 C 1.53043 * 109.45960 * 240.03974 * 2 1 3 5 5 C 1.53197 * 109.31254 * 178.61748 * 4 2 1 6 6 N 1.46923 * 108.77283 * 54.63408 * 5 4 2 7 7 S 1.65601 * 120.62604 * 126.42017 * 6 5 4 8 8 O 1.42091 * 104.27971 * 26.04120 * 7 6 5 9 9 O 1.42102 * 104.27617 * 153.90514 * 7 6 5 10 10 C 1.81410 * 104.44749 * 269.97011 * 7 6 5 11 11 C 1.52992 * 109.47112 * 173.99642 * 10 7 6 12 12 C 1.50701 * 115.54922 * 65.20363 * 11 10 7 13 13 H 1.07997 * 120.00052 * 264.78112 * 12 11 10 14 14 C 1.37875 * 120.00240 * 84.78499 * 12 11 10 15 15 N 1.31521 * 119.99688 * 352.22576 * 14 12 11 16 16 Si 1.86796 * 120.00327 * 172.23041 * 14 12 11 17 17 H 1.48498 * 109.47458 * 89.99686 * 16 14 12 18 18 H 1.48501 * 109.47183 * 210.00065 * 16 14 12 19 19 H 1.48504 * 109.46835 * 329.99581 * 16 14 12 20 20 C 1.53001 * 117.50217 * 279.53207 * 11 10 7 21 21 C 1.53002 * 117.49798 * 210.87153 * 11 10 7 22 22 C 1.46921 * 118.74398 * 306.38777 * 6 5 4 23 23 C 1.53045 * 109.45832 * 119.97301 * 2 1 3 24 24 H 1.09001 * 109.49451 * 61.43524 * 23 2 1 25 25 C 1.50699 * 109.49916 * 301.33554 * 23 2 1 26 26 O 1.20832 * 119.99514 * 0.02562 * 25 23 2 27 27 O 1.34217 * 120.00029 * 180.02562 * 25 23 2 28 28 H 1.08995 * 109.46994 * 300.02778 * 1 2 3 29 29 H 1.09005 * 109.47070 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46752 * 60.02824 * 1 2 3 31 31 H 1.09005 * 109.49568 * 298.56548 * 4 2 1 32 32 H 1.08994 * 109.50082 * 58.66332 * 4 2 1 33 33 H 1.08996 * 109.58204 * 294.84425 * 5 4 2 34 34 H 1.09001 * 109.58280 * 174.42483 * 5 4 2 35 35 H 1.09002 * 109.47012 * 294.00273 * 10 7 6 36 36 H 1.08997 * 109.46501 * 53.99519 * 10 7 6 37 37 H 0.96998 * 119.99377 * 185.03114 * 15 14 12 38 38 H 1.09003 * 117.49670 * 0.02562 * 20 11 10 39 39 H 1.09002 * 117.50120 * 145.02108 * 20 11 10 40 40 H 1.08999 * 117.49802 * 214.97616 * 21 11 10 41 41 H 1.08997 * 117.49725 * 359.97438 * 21 11 10 42 42 H 1.09000 * 109.59128 * 293.83272 * 22 6 5 43 43 H 1.08994 * 109.70842 * 173.46988 * 22 6 5 44 44 H 0.96707 * 117.00411 * 179.97438 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0399 -0.7206 -1.2502 5 6 3.5714 -0.6885 -1.2643 6 7 4.0678 -1.2489 -0.0001 7 16 5.1666 -2.4879 -0.0003 8 8 5.8517 -2.3486 -1.2373 9 8 5.8520 -2.3486 1.2367 10 6 4.1526 -3.9921 -0.0001 11 6 5.0570 -5.2168 -0.1511 12 6 6.0057 -5.4691 0.9923 13 1 7.0198 -5.1011 0.9437 14 6 5.5790 -6.1700 2.1003 15 7 4.3088 -6.4854 2.2299 16 14 6.8050 -6.6713 3.4176 17 1 6.8991 -5.5986 4.4402 18 1 6.3525 -7.9307 4.0614 19 1 8.1380 -6.8832 2.7982 20 6 5.5385 -5.5702 -1.5597 21 6 4.4799 -6.4365 -0.8726 22 6 3.5714 -0.6888 1.2642 23 6 2.0398 -0.7209 1.2500 24 1 1.6978 -1.7558 1.2381 25 6 1.5108 -0.0298 2.4803 26 8 0.7985 0.9399 2.3691 27 8 1.8309 -0.4913 3.6993 28 1 -0.3633 0.5142 0.8897 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5134 -0.8902 31 1 1.6978 -1.7555 -1.2385 32 1 1.6573 -0.2206 -2.1399 33 1 3.9143 0.3410 -1.3673 34 1 3.9417 -1.2844 -2.0986 35 1 3.6030 -4.0597 0.9388 36 1 3.4484 -3.9556 -0.8313 37 1 3.9959 -6.9136 3.0421 38 1 5.2113 -4.9297 -2.3788 39 1 6.5414 -5.9854 -1.6594 40 1 4.7869 -7.4213 -0.5206 41 1 3.4559 -6.3664 -1.2392 42 1 3.9142 0.3407 1.3674 43 1 3.9416 -1.2827 2.0998 44 1 1.4681 -0.0146 4.4585 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000569121325.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:43:03 Heat of formation + Delta-G solvation = -166.737243 kcal Electronic energy + Delta-G solvation = -28399.810911 eV Core-core repulsion = 24443.901064 eV Total energy + Delta-G solvation = -3955.909846 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -41.71399 -39.32129 -38.54769 -38.01007 -37.19160 -36.78483 -34.62055 -34.06803 -32.57492 -29.83260 -28.90498 -27.47681 -25.75895 -23.75506 -23.00023 -22.92635 -21.46434 -20.77961 -19.82575 -19.04920 -18.62834 -18.31270 -17.46831 -17.34902 -16.85980 -16.64471 -16.44416 -15.70604 -15.49376 -15.28130 -15.24536 -14.89130 -14.70151 -14.49826 -13.84037 -13.74683 -13.65076 -13.15279 -13.13228 -13.06014 -12.91807 -12.89527 -12.85478 -12.68927 -12.43491 -12.42252 -12.35618 -12.21382 -11.95891 -11.87532 -11.80617 -11.56228 -11.38897 -11.05535 -10.85458 -10.53310 -10.17389 -9.75805 -8.18117 -6.32151 -0.55504 1.12991 1.39134 1.41896 1.49950 1.84326 2.17162 2.40655 3.00454 3.08926 3.32265 3.41577 3.53040 3.59660 3.76742 3.93975 4.07657 4.18601 4.23715 4.31642 4.44400 4.49000 4.53333 4.61300 4.67211 4.71025 4.77606 4.84077 4.86461 4.93356 4.99996 5.07648 5.16626 5.20275 5.23729 5.37689 5.45664 5.49172 5.61008 5.64500 5.73197 5.73662 6.24375 6.73585 7.00481 7.39973 8.88717 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.013516 B = 0.004791 C = 0.004139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2071.069555 B = 5842.885202 C = 6763.053182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.068 4.068 3 H 0.081 0.919 4 C -0.125 4.125 5 C 0.107 3.893 6 N -1.000 6.000 7 S 2.618 3.382 8 O -0.986 6.986 9 O -0.989 6.989 10 C -0.549 4.549 11 C 0.010 3.990 12 C -0.534 4.534 13 H 0.047 0.953 14 C 0.044 3.956 15 N -0.890 5.890 16 Si 0.932 3.068 17 H -0.277 1.277 18 H -0.274 1.274 19 H -0.270 1.270 20 C -0.196 4.196 21 C -0.138 4.138 22 C 0.131 3.869 23 C -0.096 4.096 24 H 0.119 0.881 25 C 0.493 3.507 26 O -0.527 6.527 27 O -0.515 6.515 28 H 0.064 0.936 29 H 0.054 0.946 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.109 0.891 33 H 0.086 0.914 34 H 0.095 0.905 35 H 0.122 0.878 36 H 0.134 0.866 37 H 0.265 0.735 38 H 0.101 0.899 39 H 0.080 0.920 40 H 0.064 0.936 41 H 0.089 0.911 42 H 0.087 0.913 43 H 0.089 0.911 44 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.979 12.531 -4.360 16.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.087 4.087 3 H 0.100 0.900 4 C -0.164 4.164 5 C -0.017 4.017 6 N -0.837 5.837 7 S 2.717 3.283 8 O -0.976 6.976 9 O -0.980 6.980 10 C -0.682 4.682 11 C 0.007 3.993 12 C -0.571 4.571 13 H 0.065 0.935 14 C -0.159 4.159 15 N -0.526 5.526 16 Si 0.757 3.243 17 H -0.202 1.202 18 H -0.199 1.199 19 H -0.195 1.195 20 C -0.233 4.233 21 C -0.177 4.177 22 C 0.005 3.995 23 C -0.117 4.117 24 H 0.137 0.863 25 C 0.336 3.664 26 O -0.417 6.417 27 O -0.329 6.329 28 H 0.083 0.917 29 H 0.073 0.927 30 H 0.089 0.911 31 H 0.094 0.906 32 H 0.127 0.873 33 H 0.104 0.896 34 H 0.113 0.887 35 H 0.140 0.860 36 H 0.152 0.848 37 H 0.074 0.926 38 H 0.119 0.881 39 H 0.099 0.901 40 H 0.083 0.917 41 H 0.107 0.893 42 H 0.105 0.895 43 H 0.107 0.893 44 H 0.290 0.710 Dipole moment (debyes) X Y Z Total from point charges -9.161 12.578 -4.621 16.232 hybrid contribution -0.153 -0.564 1.689 1.787 sum -9.314 12.014 -2.933 15.482 Atomic orbital electron populations 1.22068 0.93877 1.02139 1.03433 1.20954 0.96706 0.99452 0.91555 0.90034 1.22061 0.93819 1.02235 0.98296 1.21767 0.95187 1.00886 0.83875 1.57813 1.62986 1.50718 1.12200 1.04647 0.75262 0.75505 0.72876 1.93455 1.71718 1.86236 1.46224 1.93479 1.71879 1.85830 1.46763 1.29904 1.12284 1.15592 1.10388 1.18421 0.97094 0.92787 0.90953 1.20685 0.97039 1.36783 1.02638 0.93488 1.25480 0.96598 0.94421 0.99359 1.70015 1.14440 1.41008 1.27175 0.85948 0.80278 0.78096 0.79945 1.20224 1.19884 1.19466 1.23244 0.99127 1.04970 0.95949 1.22505 0.96537 0.95414 1.03250 1.21279 0.91279 1.01223 0.85758 1.21625 0.96702 1.02590 0.90772 0.86301 1.23290 0.76706 0.81364 0.85042 1.90639 1.36379 1.27335 1.87371 1.84589 1.71176 1.59859 1.17243 0.91739 0.92715 0.91052 0.90627 0.87302 0.89571 0.88695 0.86016 0.84816 0.92569 0.88080 0.90135 0.91723 0.89268 0.89507 0.89311 0.71028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.70 8.85 71.98 0.64 -2.06 16 2 C -0.07 -1.21 1.87 -10.76 -0.02 -1.23 16 3 H 0.08 1.47 8.13 -2.39 -0.02 1.45 16 4 C -0.13 -1.97 5.36 30.67 0.16 -1.81 16 5 C 0.11 2.21 6.31 86.36 0.55 2.76 16 6 N -1.00 -27.78 3.22 -513.08 -1.65 -29.44 16 7 S 2.62 101.43 5.15 -56.49 -0.29 101.14 16 8 O -0.99 -40.73 16.72 -127.65 -2.13 -42.86 16 9 O -0.99 -46.67 16.39 -127.65 -2.09 -48.77 16 10 C -0.55 -21.59 6.03 71.98 0.43 -21.16 16 11 C 0.01 0.45 1.32 -52.93 -0.07 0.38 16 12 C -0.53 -29.19 8.17 25.60 0.21 -28.98 16 13 H 0.05 2.68 7.83 -2.91 -0.02 2.66 16 14 C 0.04 2.41 5.38 84.65 0.46 2.86 16 15 N -0.89 -48.24 12.98 21.45 0.28 -47.96 16 16 Si 0.93 43.59 29.55 68.60 2.03 45.62 16 17 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 18 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 19 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 20 C -0.20 -8.15 9.96 30.62 0.30 -7.84 16 21 C -0.14 -6.00 9.49 30.62 0.29 -5.71 16 22 C 0.13 3.35 5.52 86.37 0.48 3.83 16 23 C -0.10 -2.07 2.33 -11.46 -0.03 -2.09 16 24 H 0.12 2.52 8.14 -2.39 -0.02 2.50 16 25 C 0.49 10.84 7.33 71.24 0.52 11.36 16 26 O -0.53 -13.06 14.34 21.95 0.31 -12.74 16 27 O -0.51 -10.11 13.35 -51.29 -0.68 -10.79 16 28 H 0.06 1.34 5.40 -2.39 -0.01 1.33 16 29 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 30 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.08 1.18 8.14 -2.38 -0.02 1.16 16 32 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.09 1.99 7.10 -2.39 -0.02 1.97 16 35 H 0.12 5.09 8.14 -2.39 -0.02 5.07 16 36 H 0.13 4.13 8.09 -2.39 -0.02 4.12 16 37 H 0.27 13.68 8.32 -92.71 -0.77 12.91 16 38 H 0.10 3.64 8.14 -2.39 -0.02 3.62 16 39 H 0.08 3.40 8.14 -2.39 -0.02 3.38 16 40 H 0.06 3.05 8.14 -2.39 -0.02 3.03 16 41 H 0.09 3.41 8.14 -2.39 -0.02 3.39 16 42 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 43 H 0.09 2.64 7.11 -2.39 -0.02 2.62 16 44 H 0.43 4.38 9.10 -74.05 -0.67 3.71 16 Total: -1.00 -71.64 369.74 0.02 -71.62 By element: Atomic # 1 Polarization: 23.52 SS G_CDS: 0.33 Total: 23.86 kcal Atomic # 6 Polarization: -53.60 SS G_CDS: 3.92 Total: -49.68 kcal Atomic # 7 Polarization: -76.02 SS G_CDS: -1.37 Total: -77.39 kcal Atomic # 8 Polarization: -110.57 SS G_CDS: -4.60 Total: -115.17 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Atomic # 16 Polarization: 101.43 SS G_CDS: -0.29 Total: 101.14 kcal Total: -71.64 0.02 -71.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569121325.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.118 kcal (2) G-P(sol) polarization free energy of solvation -71.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds