Wall clock time and date at job start Tue Mar 31 2020 17:43:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09005 * 109.44728 * 2 1 4 4 C 1.53036 * 109.46317 * 240.02792 * 2 1 3 5 5 C 1.53195 * 109.31236 * 301.34644 * 4 2 1 6 6 N 1.46925 * 108.77223 * 305.36382 * 5 4 2 7 7 S 1.65601 * 120.62831 * 233.61033 * 6 5 4 8 8 O 1.42094 * 104.27756 * 206.07478 * 7 6 5 9 9 O 1.42110 * 104.27618 * 333.92892 * 7 6 5 10 10 C 1.81401 * 104.45118 * 90.00118 * 7 6 5 11 11 C 1.52995 * 109.47273 * 174.02640 * 10 7 6 12 12 C 1.50705 * 115.55355 * 65.27272 * 11 10 7 13 13 H 1.08001 * 119.99844 * 268.55409 * 12 11 10 14 14 C 1.37878 * 119.99666 * 88.54754 * 12 11 10 15 15 N 1.31509 * 119.99459 * 174.69996 * 14 12 11 16 16 Si 1.86798 * 120.00102 * 354.70113 * 14 12 11 17 17 H 1.48500 * 109.46926 * 92.55436 * 16 14 12 18 18 H 1.48505 * 109.46829 * 212.55288 * 16 14 12 19 19 H 1.48502 * 109.46973 * 332.55248 * 16 14 12 20 20 C 1.53002 * 117.49513 * 279.60594 * 11 10 7 21 21 C 1.53000 * 117.49862 * 210.95033 * 11 10 7 22 22 C 1.46930 * 118.76823 * 53.59082 * 6 5 4 23 23 C 1.53040 * 109.45986 * 119.95825 * 2 1 3 24 24 H 1.08995 * 109.50202 * 178.64123 * 23 2 1 25 25 C 1.50706 * 109.49960 * 298.70807 * 23 2 1 26 26 O 1.20819 * 119.99870 * 359.93254 * 25 23 2 27 27 O 1.34223 * 119.99764 * 179.97438 * 25 23 2 28 28 H 1.08997 * 109.47183 * 300.03891 * 1 2 3 29 29 H 1.09000 * 109.46843 * 60.04254 * 1 2 3 30 30 H 1.09003 * 109.46795 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.49593 * 61.29769 * 4 2 1 32 32 H 1.08998 * 109.50070 * 181.39194 * 4 2 1 33 33 H 1.09002 * 109.58462 * 65.14747 * 5 4 2 34 34 H 1.08997 * 109.58367 * 185.43501 * 5 4 2 35 35 H 1.09006 * 109.46675 * 294.02210 * 10 7 6 36 36 H 1.09000 * 109.46764 * 54.02265 * 10 7 6 37 37 H 0.97003 * 119.99654 * 180.02562 * 15 14 12 38 38 H 1.08999 * 117.49817 * 0.02562 * 20 11 10 39 39 H 1.09000 * 117.49780 * 145.01861 * 20 11 10 40 40 H 1.08999 * 117.49759 * 214.98106 * 21 11 10 41 41 H 1.09001 * 117.49603 * 359.97438 * 21 11 10 42 42 H 1.08999 * 109.61529 * 186.64610 * 22 6 5 43 43 H 1.09003 * 109.56199 * 66.20951 * 22 6 5 44 44 H 0.96702 * 117.00007 * 179.97438 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8930 1.0279 0.0000 4 6 2.0400 -0.7208 -1.2499 5 6 1.4997 -2.1543 -1.2640 6 7 1.8626 -2.8088 0.0003 7 16 2.6656 -4.2571 0.0005 8 8 2.3062 -4.8569 1.2375 9 8 2.3062 -4.8572 -1.2365 10 6 4.4214 -3.8012 0.0005 11 6 5.2756 -5.0616 0.1508 12 6 5.1993 -6.0389 -0.9939 13 1 4.4726 -6.8376 -0.9744 14 6 6.0571 -5.9131 -2.0660 15 7 6.0622 -6.8242 -3.0143 16 14 7.2119 -4.4487 -2.1714 17 1 8.5167 -4.8020 -1.5567 18 1 7.4187 -4.0829 -3.5958 19 1 6.6184 -3.2970 -1.4457 20 6 5.4472 -5.6349 1.5589 21 6 6.6169 -4.9239 0.8739 22 6 1.5003 -2.1543 1.2649 23 6 2.0399 -0.7206 1.2502 24 1 3.1296 -0.7421 1.2388 25 6 1.5641 0.0086 2.4803 26 8 0.8876 1.0034 2.3690 27 8 1.8926 -0.4468 3.6994 28 1 -0.3633 0.5144 0.8896 29 1 -0.3633 0.5132 -0.8904 30 1 -0.3633 -1.0277 0.0005 31 1 1.6959 -0.1936 -2.1398 32 1 3.1297 -0.7429 -1.2382 33 1 0.4147 -2.1348 -1.3671 34 1 1.9364 -2.7012 -2.0996 35 1 4.6679 -3.3050 -0.9383 36 1 4.6213 -3.1255 0.8321 37 1 6.6659 -6.7360 -3.7684 38 1 4.9511 -5.1144 2.3781 39 1 5.5052 -6.7189 1.6573 40 1 7.4440 -5.5403 0.5219 41 1 6.8909 -3.9352 1.2422 42 1 1.9395 -2.7014 2.0991 43 1 0.4153 -2.1353 1.3683 44 1 1.5645 0.0545 4.4585 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000569121326.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:43:08 Heat of formation + Delta-G solvation = -134.921589 kcal Electronic energy + Delta-G solvation = -28550.276065 eV Core-core repulsion = 24595.745849 eV Total energy + Delta-G solvation = -3954.530216 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.01723 -38.70161 -37.16652 -36.49363 -36.41381 -35.24555 -33.38942 -32.19488 -31.76819 -28.55865 -27.87932 -25.58685 -24.79412 -24.15530 -22.04292 -21.74240 -19.77526 -19.02408 -18.37495 -18.11602 -17.48692 -16.70818 -16.59683 -16.36755 -15.58397 -15.40275 -15.07483 -14.86329 -14.58096 -14.15737 -14.01201 -13.90443 -13.68745 -13.04019 -12.83239 -12.69324 -12.40625 -12.27265 -12.15405 -11.83837 -11.67029 -11.46259 -11.40494 -11.26973 -11.21090 -11.18808 -10.97968 -10.95691 -10.69552 -10.64083 -10.40720 -10.38325 -10.11787 -9.76256 -9.19285 -8.99874 -8.69327 -8.46347 -6.19876 -4.27518 0.80750 1.90512 2.71848 3.14771 3.19226 3.29168 3.30909 4.22263 4.31702 4.36199 4.50932 4.56254 4.68009 4.78137 4.87277 4.91204 5.01271 5.06347 5.13040 5.22725 5.33948 5.43877 5.48889 5.55788 5.57956 5.67828 5.71830 5.88005 5.90274 5.92587 6.00074 6.03640 6.11757 6.14304 6.17658 6.37884 6.39944 6.58701 6.65843 6.85184 7.03528 7.56456 7.62750 8.33796 8.85489 9.41171 10.91607 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.016714 B = 0.004488 C = 0.004299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1674.807896 B = 6237.433256 C = 6511.831809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.071 4.071 3 H 0.080 0.920 4 C -0.133 4.133 5 C 0.114 3.886 6 N -1.007 6.007 7 S 2.611 3.389 8 O -0.962 6.962 9 O -0.933 6.933 10 C -0.576 4.576 11 C 0.001 3.999 12 C -0.510 4.510 13 H 0.087 0.913 14 C 0.089 3.911 15 N -0.882 5.882 16 Si 0.874 3.126 17 H -0.275 1.275 18 H -0.290 1.290 19 H -0.257 1.257 20 C -0.177 4.177 21 C -0.185 4.185 22 C 0.132 3.868 23 C -0.097 4.097 24 H 0.115 0.885 25 C 0.488 3.512 26 O -0.509 6.509 27 O -0.513 6.513 28 H 0.074 0.926 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.083 0.917 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.099 0.901 35 H 0.126 0.874 36 H 0.105 0.895 37 H 0.267 0.733 38 H 0.082 0.918 39 H 0.095 0.905 40 H 0.092 0.908 41 H 0.075 0.925 42 H 0.104 0.896 43 H 0.077 0.923 44 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.600 15.915 8.547 19.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.089 4.089 3 H 0.098 0.902 4 C -0.172 4.172 5 C -0.011 4.011 6 N -0.843 5.843 7 S 2.708 3.292 8 O -0.953 6.953 9 O -0.924 6.924 10 C -0.708 4.708 11 C -0.002 4.002 12 C -0.547 4.547 13 H 0.104 0.896 14 C -0.116 4.116 15 N -0.517 5.517 16 Si 0.701 3.299 17 H -0.201 1.201 18 H -0.217 1.217 19 H -0.181 1.181 20 C -0.214 4.214 21 C -0.223 4.223 22 C 0.006 3.994 23 C -0.118 4.118 24 H 0.133 0.867 25 C 0.329 3.671 26 O -0.397 6.397 27 O -0.324 6.324 28 H 0.093 0.907 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.101 0.899 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.117 0.883 35 H 0.145 0.855 36 H 0.123 0.877 37 H 0.077 0.923 38 H 0.100 0.900 39 H 0.114 0.886 40 H 0.111 0.889 41 H 0.093 0.907 42 H 0.122 0.878 43 H 0.096 0.904 44 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges -8.025 15.031 7.960 18.806 hybrid contribution 1.161 1.763 0.335 2.137 sum -6.864 16.794 8.295 19.949 Atomic orbital electron populations 1.22168 0.94391 1.02394 1.03243 1.20914 0.97062 0.98988 0.91975 0.90164 1.22026 1.01553 0.95954 0.97626 1.21488 1.01173 0.92931 0.85507 1.58259 1.73249 1.42198 1.10558 1.05222 0.77017 0.72524 0.74450 1.93508 1.82318 1.73525 1.45904 1.93588 1.81642 1.72422 1.44707 1.30357 1.23211 1.07839 1.09351 1.18864 0.95286 0.92304 0.93757 1.20337 1.21085 1.12472 1.00756 0.89555 1.24946 0.96224 0.95497 0.94911 1.69895 1.37451 1.33591 1.10764 0.86931 0.81751 0.84271 0.76950 1.20131 1.21691 1.18106 1.23027 1.02484 1.00468 0.95408 1.22984 0.93124 1.00454 1.05785 1.21232 1.01230 0.90049 0.86882 1.21587 1.03467 0.96742 0.89988 0.86729 1.23348 0.76419 0.82673 0.84618 1.90668 1.36047 1.25912 1.87089 1.84584 1.72790 1.58209 1.16835 0.90701 0.92379 0.92162 0.89888 0.90951 0.90752 0.88326 0.85545 0.87663 0.92264 0.89972 0.88632 0.88926 0.90683 0.87822 0.90434 0.73132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.56 8.13 37.16 0.30 -1.26 16 2 C -0.07 -0.67 2.35 -90.58 -0.21 -0.88 16 3 H 0.08 0.74 8.07 -51.93 -0.42 0.32 16 4 C -0.13 -1.25 5.63 -26.61 -0.15 -1.40 16 5 C 0.11 1.36 5.84 -3.71 -0.02 1.34 16 6 N -1.01 -13.83 3.22 -113.51 -0.37 -14.20 16 7 S 2.61 49.04 5.15 -107.50 -0.55 48.48 16 8 O -0.96 -19.58 16.72 -57.54 -0.96 -20.54 16 9 O -0.93 -21.26 16.39 -57.54 -0.94 -22.20 16 10 C -0.58 -10.70 5.65 37.15 0.21 -10.49 16 11 C 0.00 0.01 0.79 -155.66 -0.12 -0.11 16 12 C -0.51 -13.94 8.77 -34.44 -0.30 -14.24 16 13 H 0.09 2.63 8.06 -52.49 -0.42 2.21 16 14 C 0.09 2.48 5.47 -17.82 -0.10 2.39 16 15 N -0.88 -26.30 13.96 55.43 0.77 -25.53 16 16 Si 0.87 20.51 24.96 -169.99 -4.24 16.27 16 17 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 18 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 19 H -0.26 -5.46 5.68 56.52 0.32 -5.14 16 20 C -0.18 -3.54 9.96 -26.69 -0.27 -3.81 16 21 C -0.18 -3.72 7.67 -26.69 -0.20 -3.93 16 22 C 0.13 1.53 5.06 -3.71 -0.02 1.51 16 23 C -0.10 -0.96 2.56 -91.65 -0.23 -1.19 16 24 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 25 C 0.49 4.80 7.34 36.01 0.26 5.07 16 26 O -0.51 -6.01 14.51 -18.74 -0.27 -6.28 16 27 O -0.51 -4.08 13.35 -39.24 -0.52 -4.61 16 28 H 0.07 0.79 5.64 -51.93 -0.29 0.50 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.57 4.98 -51.93 -0.26 0.32 16 31 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.07 0.79 6.69 -51.93 -0.35 0.44 16 34 H 0.10 1.28 7.11 -51.93 -0.37 0.91 16 35 H 0.13 2.31 6.53 -51.92 -0.34 1.97 16 36 H 0.10 1.55 8.09 -51.92 -0.42 1.13 16 37 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 38 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 39 H 0.10 1.94 8.14 -51.93 -0.42 1.52 16 40 H 0.09 1.96 7.34 -51.93 -0.38 1.58 16 41 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 42 H 0.10 1.22 7.10 -51.93 -0.37 0.85 16 43 H 0.08 0.83 6.70 -51.93 -0.35 0.48 16 44 H 0.41 1.49 9.10 45.56 0.41 1.91 16 LS Contribution 354.07 15.07 5.34 5.34 Total: -1.00 -35.21 354.07 -8.33 -43.54 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -5.73 Total: 6.73 kcal Atomic # 6 Polarization: -26.14 SS G_CDS: -0.85 Total: -27.00 kcal Atomic # 7 Polarization: -40.13 SS G_CDS: 0.41 Total: -39.72 kcal Atomic # 8 Polarization: -50.93 SS G_CDS: -2.70 Total: -53.63 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -4.24 Total: 16.27 kcal Atomic # 16 Polarization: 49.04 SS G_CDS: -0.55 Total: 48.48 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -35.21 -8.33 -43.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569121326.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.379 kcal (2) G-P(sol) polarization free energy of solvation -35.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds