Wall clock time and date at job start Tue Mar 31 2020 17:43:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.45043 * 2 1 4 4 C 1.53037 * 109.46118 * 119.97211 * 2 1 3 5 5 C 1.53196 * 109.31292 * 181.38467 * 4 2 1 6 6 N 1.46926 * 108.77210 * 305.36107 * 5 4 2 7 7 S 1.65600 * 120.62886 * 233.58264 * 6 5 4 8 8 O 1.42102 * 104.27942 * 333.93356 * 7 6 5 9 9 O 1.42100 * 104.28076 * 206.07352 * 7 6 5 10 10 C 1.81406 * 104.44625 * 90.00260 * 7 6 5 11 11 C 1.53003 * 109.46832 * 176.36065 * 10 7 6 12 12 C 1.50702 * 115.54762 * 65.05497 * 11 10 7 13 13 H 1.08008 * 119.99705 * 264.75686 * 12 11 10 14 14 C 1.37877 * 120.00239 * 84.76157 * 12 11 10 15 15 N 1.31513 * 119.99752 * 354.01557 * 14 12 11 16 16 Si 1.86800 * 119.99921 * 174.01256 * 14 12 11 17 17 H 1.48498 * 109.46746 * 60.00235 * 16 14 12 18 18 H 1.48501 * 109.46821 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47252 * 300.00332 * 16 14 12 20 20 C 1.52994 * 117.50020 * 279.38065 * 11 10 7 21 21 C 1.52998 * 117.49669 * 210.71800 * 11 10 7 22 22 C 1.46923 * 118.73936 * 53.86537 * 6 5 4 23 23 C 1.53049 * 109.45792 * 240.03823 * 2 1 3 24 24 H 1.09008 * 109.49154 * 298.59673 * 23 2 1 25 25 C 1.50693 * 109.49685 * 58.65941 * 23 2 1 26 26 O 1.20829 * 120.00694 * 0.02562 * 25 23 2 27 27 O 1.34233 * 119.99805 * 179.97438 * 25 23 2 28 28 H 1.08998 * 109.46863 * 300.03415 * 1 2 3 29 29 H 1.08997 * 109.46990 * 60.03016 * 1 2 3 30 30 H 1.08999 * 109.47508 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.49890 * 61.42963 * 4 2 1 32 32 H 1.08998 * 109.49473 * 301.32964 * 4 2 1 33 33 H 1.08998 * 109.58790 * 185.57446 * 5 4 2 34 34 H 1.09004 * 109.58665 * 65.14904 * 5 4 2 35 35 H 1.08993 * 109.46805 * 56.36458 * 10 7 6 36 36 H 1.08990 * 109.47101 * 296.35959 * 10 7 6 37 37 H 0.96999 * 119.99832 * 185.02971 * 15 14 12 38 38 H 1.08999 * 117.49888 * 0.02562 * 20 11 10 39 39 H 1.09005 * 117.50278 * 145.02383 * 20 11 10 40 40 H 1.08997 * 117.49964 * 214.97815 * 21 11 10 41 41 H 1.08995 * 117.50258 * 359.97438 * 21 11 10 42 42 H 1.08993 * 109.59005 * 65.92022 * 22 6 5 43 43 H 1.09001 * 109.58390 * 186.35121 * 22 6 5 44 44 H 0.96697 * 116.99846 * 180.02562 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0277 0.0000 4 6 2.0399 -0.7209 1.2500 5 6 3.5714 -0.6887 1.2641 6 7 4.0678 -1.2489 -0.0002 7 16 5.1666 -2.4879 -0.0003 8 8 5.8521 -2.3484 1.2366 9 8 5.8517 -2.3487 -1.2374 10 6 4.1525 -3.9920 0.0001 11 6 5.0612 -5.2196 -0.0915 12 6 5.9726 -5.4430 1.0877 13 1 6.9881 -5.0759 1.0624 14 6 5.5103 -6.1161 2.1986 15 7 4.2434 -6.4597 2.2793 16 14 6.6835 -6.5400 3.5891 17 1 7.2663 -5.2915 4.1428 18 1 5.9445 -7.2576 4.6588 19 1 7.7720 -7.4073 3.0713 20 6 5.5876 -5.6073 -1.4747 21 6 4.5074 -6.4570 -0.8007 22 6 3.5756 -0.6848 -1.2644 23 6 2.0398 -0.7207 -1.2502 24 1 1.6972 -1.7555 -1.2387 25 6 1.5107 -0.0293 -2.4802 26 8 0.7991 0.9408 -2.3691 27 8 1.8308 -0.4907 -3.6995 28 1 -0.3633 0.5144 0.8897 29 1 -0.3633 0.5134 -0.8902 30 1 -0.3634 -1.0276 0.0005 31 1 1.6978 -1.7557 1.2382 32 1 1.6573 -0.2208 2.1397 33 1 3.9418 -1.2846 2.0982 34 1 3.9144 0.3409 1.3673 35 1 3.4773 -3.9752 -0.8553 36 1 3.5713 -4.0381 0.9209 37 1 3.9023 -6.8676 3.0905 38 1 5.2869 -4.9875 -2.3195 39 1 6.5931 -6.0243 -1.5320 40 1 4.8027 -7.4327 -0.4148 41 1 3.4957 -6.3968 -1.2016 42 1 3.9188 0.3450 -1.3632 43 1 3.9487 -1.2783 -2.0991 44 1 1.4679 -0.0140 -4.4584 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000569121327.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:43:12 Heat of formation + Delta-G solvation = -143.882486 kcal Electronic energy + Delta-G solvation = -28342.804122 eV Core-core repulsion = 24387.885333 eV Total energy + Delta-G solvation = -3954.918790 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.86923 -38.39529 -36.77762 -36.39272 -36.36261 -35.14879 -33.64476 -32.05573 -31.64029 -28.21068 -28.00267 -25.48024 -24.82577 -22.80163 -22.09492 -21.23103 -20.16225 -19.40371 -18.52658 -18.18229 -17.28346 -16.58413 -16.46693 -16.20207 -15.42832 -15.14519 -14.70587 -14.60838 -14.30814 -14.15144 -13.88819 -13.72814 -13.57408 -13.12401 -12.91145 -12.31753 -12.14390 -11.96383 -11.86316 -11.72975 -11.61243 -11.44283 -11.32938 -11.29210 -11.06179 -10.97979 -10.91927 -10.88298 -10.62539 -10.55258 -10.47432 -10.22607 -10.11289 -9.71697 -9.01510 -8.92201 -8.57723 -8.09596 -6.15240 -4.26115 0.95843 1.97205 2.79749 3.26103 3.31700 3.33721 3.40642 4.31725 4.36280 4.44102 4.61432 4.64611 4.78744 4.94945 5.07285 5.11433 5.14504 5.18378 5.22883 5.33900 5.49203 5.55042 5.63221 5.65931 5.68678 5.81069 5.88980 5.92385 5.98066 6.09330 6.16706 6.23895 6.27304 6.36158 6.44554 6.58987 6.69585 6.72852 6.97376 7.22000 7.38023 7.69811 7.78850 8.18377 8.79311 9.45209 10.92372 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.017079 B = 0.004210 C = 0.003957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.056274 B = 6649.685932 C = 7074.982791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.071 4.071 3 H 0.080 0.920 4 C -0.132 4.132 5 C 0.117 3.883 6 N -1.009 6.009 7 S 2.603 3.397 8 O -0.943 6.943 9 O -0.970 6.970 10 C -0.552 4.552 11 C 0.042 3.958 12 C -0.514 4.514 13 H 0.068 0.932 14 C 0.082 3.918 15 N -0.876 5.876 16 Si 0.890 3.110 17 H -0.269 1.269 18 H -0.286 1.286 19 H -0.274 1.274 20 C -0.210 4.210 21 C -0.139 4.139 22 C 0.135 3.865 23 C -0.096 4.096 24 H 0.116 0.884 25 C 0.488 3.512 26 O -0.510 6.510 27 O -0.512 6.512 28 H 0.056 0.944 29 H 0.079 0.921 30 H 0.051 0.949 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.099 0.901 34 H 0.069 0.931 35 H 0.097 0.903 36 H 0.133 0.867 37 H 0.263 0.737 38 H 0.075 0.925 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.066 0.934 42 H 0.074 0.926 43 H 0.104 0.896 44 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.443 11.579 -6.488 15.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.090 4.090 3 H 0.099 0.901 4 C -0.171 4.171 5 C -0.008 4.008 6 N -0.844 5.844 7 S 2.702 3.298 8 O -0.933 6.933 9 O -0.960 6.960 10 C -0.685 4.685 11 C 0.040 3.960 12 C -0.552 4.552 13 H 0.086 0.914 14 C -0.123 4.123 15 N -0.511 5.511 16 Si 0.717 3.283 17 H -0.194 1.194 18 H -0.211 1.211 19 H -0.199 1.199 20 C -0.247 4.247 21 C -0.178 4.178 22 C 0.008 3.992 23 C -0.117 4.117 24 H 0.134 0.866 25 C 0.330 3.670 26 O -0.398 6.398 27 O -0.324 6.324 28 H 0.075 0.925 29 H 0.098 0.902 30 H 0.070 0.930 31 H 0.093 0.907 32 H 0.100 0.900 33 H 0.117 0.883 34 H 0.087 0.913 35 H 0.116 0.884 36 H 0.151 0.849 37 H 0.073 0.927 38 H 0.094 0.906 39 H 0.105 0.895 40 H 0.104 0.896 41 H 0.084 0.916 42 H 0.092 0.908 43 H 0.122 0.878 44 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -7.636 11.643 -5.994 15.159 hybrid contribution -0.601 -0.295 0.279 0.725 sum -8.236 11.348 -5.715 15.142 Atomic orbital electron populations 1.22133 0.94405 1.01984 1.03486 1.20952 0.96384 0.99547 0.92075 0.90140 1.22057 0.95740 1.01854 0.97425 1.21443 0.93556 1.00187 0.85612 1.58250 1.63585 1.52055 1.10470 1.05425 0.75029 0.75175 0.74194 1.93544 1.69875 1.85026 1.44840 1.93494 1.70748 1.85839 1.45937 1.30018 1.12503 1.16691 1.09286 1.18291 0.96090 0.90535 0.91118 1.20487 0.97785 1.37665 0.99214 0.91416 1.24939 0.95197 0.94026 0.98097 1.69968 1.13177 1.40629 1.27356 0.86663 0.81179 0.79085 0.81397 1.19420 1.21139 1.19887 1.23213 0.99178 1.05807 0.96502 1.22539 0.95189 0.96949 1.03161 1.21273 0.89842 1.01044 0.87017 1.21713 0.98181 1.01997 0.89832 0.86578 1.23392 0.77126 0.81868 0.84627 1.90645 1.35512 1.26625 1.87014 1.84593 1.71321 1.59637 1.16826 0.92460 0.90236 0.92988 0.90685 0.90025 0.88303 0.91276 0.88435 0.84861 0.92695 0.90642 0.89536 0.89555 0.91550 0.90819 0.87806 0.73205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.61 8.86 37.16 0.33 -1.28 16 2 C -0.07 -0.73 1.87 -90.58 -0.17 -0.90 16 3 H 0.08 0.84 8.13 -51.93 -0.42 0.42 16 4 C -0.13 -1.38 5.36 -26.61 -0.14 -1.52 16 5 C 0.12 1.49 6.31 -3.71 -0.02 1.46 16 6 N -1.01 -14.73 3.21 -113.27 -0.36 -15.10 16 7 S 2.60 50.88 5.18 -107.50 -0.56 50.33 16 8 O -0.94 -21.70 16.25 -57.54 -0.93 -22.64 16 9 O -0.97 -20.48 16.71 -57.54 -0.96 -21.44 16 10 C -0.55 -11.09 6.03 37.16 0.22 -10.87 16 11 C 0.04 1.00 1.33 -155.66 -0.21 0.79 16 12 C -0.51 -13.79 8.06 -34.44 -0.28 -14.07 16 13 H 0.07 1.86 7.82 -52.48 -0.41 1.45 16 14 C 0.08 2.20 5.39 -17.82 -0.10 2.11 16 15 N -0.88 -23.58 12.93 55.43 0.72 -22.86 16 16 Si 0.89 21.03 29.55 -169.99 -5.02 16.01 16 17 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 18 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 19 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 20 C -0.21 -4.51 9.96 -26.70 -0.27 -4.77 16 21 C -0.14 -3.10 9.44 -26.69 -0.25 -3.36 16 22 C 0.13 1.67 5.56 -3.49 -0.02 1.65 16 23 C -0.10 -1.04 2.34 -91.43 -0.21 -1.25 16 24 H 0.12 1.18 8.14 -51.92 -0.42 0.76 16 25 C 0.49 5.15 7.33 36.00 0.26 5.41 16 26 O -0.51 -6.30 14.34 -18.75 -0.27 -6.56 16 27 O -0.51 -4.42 13.36 -39.27 -0.52 -4.95 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.08 0.88 5.40 -51.93 -0.28 0.60 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.10 1.38 7.10 -51.93 -0.37 1.01 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.10 1.64 8.09 -51.93 -0.42 1.22 16 36 H 0.13 2.77 8.14 -51.93 -0.42 2.34 16 37 H 0.26 6.79 8.32 -40.82 -0.34 6.45 16 38 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 39 H 0.09 1.84 8.14 -51.93 -0.42 1.42 16 40 H 0.09 2.04 8.14 -51.93 -0.42 1.62 16 41 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 42 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 43 H 0.10 1.32 7.09 -51.93 -0.37 0.95 16 44 H 0.41 1.71 9.10 45.56 0.41 2.13 16 LS Contribution 369.45 15.07 5.57 5.57 Total: -1.00 -33.24 369.45 -9.26 -42.50 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: -6.06 Total: 5.74 kcal Atomic # 6 Polarization: -25.74 SS G_CDS: -0.85 Total: -26.59 kcal Atomic # 7 Polarization: -38.31 SS G_CDS: 0.35 Total: -37.96 kcal Atomic # 8 Polarization: -52.90 SS G_CDS: -2.69 Total: -55.59 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Atomic # 16 Polarization: 50.88 SS G_CDS: -0.56 Total: 50.33 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.24 -9.26 -42.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569121327.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.382 kcal (2) G-P(sol) polarization free energy of solvation -33.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds