Wall clock time and date at job start Tue Mar 31 2020 17:43:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 109.46108 * 2 1 4 4 C 1.53039 * 109.45844 * 119.97021 * 2 1 3 5 5 C 1.53195 * 109.31406 * 58.64126 * 4 2 1 6 6 N 1.46927 * 108.77346 * 54.63563 * 5 4 2 7 7 S 1.65601 * 120.63418 * 126.37093 * 6 5 4 8 8 O 1.42102 * 104.27147 * 333.92488 * 7 6 5 9 9 O 1.42094 * 104.27613 * 206.06991 * 7 6 5 10 10 C 1.81397 * 104.45037 * 89.99640 * 7 6 5 11 11 C 1.52998 * 109.46914 * 186.06289 * 10 7 6 12 12 C 1.50699 * 115.54898 * 294.74013 * 11 10 7 13 13 H 1.07999 * 120.00359 * 99.44750 * 12 11 10 14 14 C 1.37881 * 119.99873 * 279.44857 * 12 11 10 15 15 N 1.31519 * 120.00245 * 5.45502 * 14 12 11 16 16 Si 1.86800 * 119.99887 * 185.46313 * 14 12 11 17 17 H 1.48506 * 109.47181 * 179.97438 * 16 14 12 18 18 H 1.48497 * 109.47369 * 299.99816 * 16 14 12 19 19 H 1.48501 * 109.47271 * 59.99758 * 16 14 12 20 20 C 1.53003 * 117.52059 * 80.44157 * 11 10 7 21 21 C 1.53002 * 117.50091 * 149.07287 * 11 10 7 22 22 C 1.46928 * 118.73625 * 306.64131 * 6 5 4 23 23 C 1.52762 * 109.00760 * 53.31182 * 22 6 5 24 24 H 1.09002 * 109.38587 * 65.51466 * 23 22 6 25 25 C 1.50702 * 109.56384 * 185.55090 * 23 22 6 26 26 O 1.20822 * 120.00019 * 119.96419 * 25 23 22 27 27 O 1.34227 * 119.99887 * 299.96616 * 25 23 22 28 28 H 1.09004 * 109.46888 * 300.02956 * 1 2 3 29 29 H 1.08999 * 109.46877 * 60.02693 * 1 2 3 30 30 H 1.09003 * 109.46998 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.50221 * 298.69241 * 4 2 1 32 32 H 1.09004 * 109.52322 * 178.61014 * 4 2 1 33 33 H 1.08997 * 109.58603 * 294.85038 * 5 4 2 34 34 H 1.09000 * 109.58532 * 174.42106 * 5 4 2 35 35 H 1.08999 * 109.46937 * 66.05879 * 10 7 6 36 36 H 1.09000 * 109.47118 * 306.05659 * 10 7 6 37 37 H 0.96996 * 119.99874 * 174.99465 * 15 14 12 38 38 H 1.08997 * 117.49498 * 214.96653 * 20 11 10 39 39 H 1.08996 * 117.49917 * 359.97438 * 20 11 10 40 40 H 1.09003 * 117.49431 * 359.96863 * 21 11 10 41 41 H 1.08994 * 117.50241 * 144.98970 * 21 11 10 42 42 H 1.09005 * 109.58492 * 173.14365 * 22 6 5 43 43 H 1.09002 * 109.58823 * 293.57157 * 22 6 5 44 44 H 0.96705 * 116.99800 * 180.02562 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7208 1.2500 5 6 1.4993 -2.1542 1.2643 6 7 1.8620 -2.8089 0.0000 7 16 2.6652 -4.2572 -0.0002 8 8 3.3648 -4.2699 1.2366 9 8 3.3640 -4.2702 -1.2373 10 6 1.3485 -5.5049 0.0003 11 6 1.9651 -6.8969 0.1526 12 6 2.8355 -7.3508 -0.9908 13 1 3.9101 -7.2747 -0.9148 14 6 2.2599 -7.8632 -2.1342 15 7 0.9519 -7.8571 -2.2715 16 14 3.3378 -8.5664 -3.4881 17 1 2.4821 -9.0499 -4.6013 18 1 4.2540 -7.5109 -3.9898 19 1 4.1343 -9.6980 -2.9492 20 6 2.3588 -7.3455 1.5614 21 6 1.1373 -7.9611 0.8759 22 6 1.5040 -2.1514 -1.2642 23 6 2.0396 -0.7208 -1.2501 24 1 3.1294 -0.7426 -1.2387 25 6 1.5639 0.0083 -2.4802 26 8 0.8866 1.0027 -2.3690 27 8 1.8926 -0.4470 -3.6994 28 1 -0.3633 0.5143 0.8898 29 1 -0.3633 0.5134 -0.8902 30 1 -0.3633 -1.0277 0.0005 31 1 1.6960 -0.1935 2.1398 32 1 3.1296 -0.7431 1.2387 33 1 0.4144 -2.1345 1.3674 34 1 1.9379 -2.7018 2.0984 35 1 0.7977 -5.4522 -0.9387 36 1 0.6690 -5.3158 0.8313 37 1 0.5503 -8.1502 -3.1044 38 1 3.2473 -7.9689 1.6611 39 1 2.1790 -6.6487 2.3801 40 1 0.1535 -7.6693 1.2437 41 1 1.2221 -8.9894 0.5247 42 1 1.9458 -2.6973 -2.0979 43 1 0.4194 -2.1315 -1.3714 44 1 1.5645 0.0545 -4.4584 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000569121329.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:43:16 Heat of formation + Delta-G solvation = -140.890168 kcal Electronic energy + Delta-G solvation = -28346.385962 eV Core-core repulsion = 24391.596929 eV Total energy + Delta-G solvation = -3954.789033 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.88984 -38.58661 -36.78225 -36.36076 -36.27268 -35.12038 -33.29731 -32.06981 -31.65638 -28.21274 -27.74772 -25.48657 -24.68191 -24.06354 -21.92681 -21.24130 -19.68549 -19.21408 -18.21225 -17.94602 -17.35137 -16.55137 -16.46212 -16.16558 -15.44440 -15.06202 -14.91152 -14.70943 -14.49220 -14.10702 -13.94404 -13.79114 -13.56046 -13.14804 -12.72014 -12.19262 -12.07595 -11.96360 -11.84347 -11.70337 -11.55082 -11.38657 -11.29197 -11.12293 -11.06015 -11.04551 -10.91071 -10.80764 -10.61828 -10.54131 -10.46922 -10.25549 -10.13680 -9.70262 -9.00887 -8.84812 -8.60185 -8.09341 -6.15386 -4.26650 0.97047 2.04672 2.87515 3.28432 3.32071 3.34172 3.41034 4.36337 4.36631 4.51585 4.61198 4.72587 4.82751 4.99727 5.03004 5.10598 5.17384 5.20362 5.24052 5.35877 5.50628 5.57651 5.62420 5.67048 5.72579 5.75601 5.93889 5.96549 6.00117 6.12566 6.17335 6.24184 6.26445 6.35997 6.48725 6.59970 6.68675 6.74790 6.96446 7.22196 7.35530 7.77289 7.78768 8.18140 8.78754 9.45142 10.92387 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.014873 B = 0.004560 C = 0.003855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.174788 B = 6139.508331 C = 7261.540333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.072 4.072 3 H 0.079 0.921 4 C -0.126 4.126 5 C 0.112 3.888 6 N -1.008 6.008 7 S 2.604 3.396 8 O -0.969 6.969 9 O -0.944 6.944 10 C -0.551 4.551 11 C 0.044 3.956 12 C -0.516 4.516 13 H 0.068 0.932 14 C 0.083 3.917 15 N -0.876 5.876 16 Si 0.890 3.110 17 H -0.285 1.285 18 H -0.269 1.269 19 H -0.274 1.274 20 C -0.207 4.207 21 C -0.144 4.144 22 C 0.129 3.871 23 C -0.091 4.091 24 H 0.115 0.885 25 C 0.489 3.511 26 O -0.513 6.513 27 O -0.509 6.509 28 H 0.056 0.944 29 H 0.075 0.925 30 H 0.060 0.940 31 H 0.079 0.921 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.096 0.904 35 H 0.135 0.865 36 H 0.097 0.903 37 H 0.264 0.736 38 H 0.086 0.914 39 H 0.075 0.925 40 H 0.066 0.934 41 H 0.085 0.915 42 H 0.110 0.890 43 H 0.073 0.927 44 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.760 14.630 3.329 15.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.090 4.090 3 H 0.097 0.903 4 C -0.165 4.165 5 C -0.013 4.013 6 N -0.843 5.843 7 S 2.703 3.297 8 O -0.959 6.959 9 O -0.934 6.934 10 C -0.684 4.684 11 C 0.041 3.959 12 C -0.553 4.553 13 H 0.086 0.914 14 C -0.122 4.122 15 N -0.511 5.511 16 Si 0.717 3.283 17 H -0.211 1.211 18 H -0.194 1.194 19 H -0.199 1.199 20 C -0.244 4.244 21 C -0.184 4.184 22 C 0.002 3.998 23 C -0.112 4.112 24 H 0.133 0.867 25 C 0.331 3.669 26 O -0.401 6.401 27 O -0.320 6.320 28 H 0.075 0.925 29 H 0.093 0.907 30 H 0.079 0.921 31 H 0.098 0.902 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.115 0.885 35 H 0.153 0.847 36 H 0.116 0.884 37 H 0.074 0.926 38 H 0.105 0.895 39 H 0.094 0.906 40 H 0.085 0.915 41 H 0.104 0.896 42 H 0.128 0.872 43 H 0.091 0.909 44 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -2.010 14.493 3.587 15.065 hybrid contribution -0.547 -0.126 -1.351 1.463 sum -2.557 14.367 2.235 14.763 Atomic orbital electron populations 1.22169 0.94432 1.02383 1.03181 1.20927 0.97000 0.98940 0.92169 0.90256 1.21911 1.01556 0.95594 0.97390 1.21478 1.00208 0.93765 0.85880 1.58187 1.77208 1.38571 1.10383 1.05357 0.76611 0.73551 0.74187 1.93483 1.70424 1.86044 1.45967 1.93534 1.69875 1.85166 1.44869 1.29993 1.15709 1.13040 1.09693 1.18287 0.98671 0.88179 0.90746 1.20489 0.92488 1.43180 0.99139 0.91424 1.24948 0.94946 0.94247 0.98099 1.69957 1.09398 1.46007 1.25774 0.86656 0.80692 0.79841 0.81103 1.21098 1.19363 1.19897 1.23160 0.99886 1.04996 0.96389 1.22580 0.92755 0.99360 1.03656 1.21176 1.00448 0.90828 0.87322 1.21389 1.03612 0.96417 0.89750 0.86693 1.23359 0.76274 0.82578 0.84706 1.90655 1.36214 1.26071 1.87163 1.84623 1.72627 1.58049 1.16743 0.92515 0.90652 0.92149 0.90196 0.91012 0.91296 0.88546 0.84661 0.88416 0.92647 0.89545 0.90649 0.91523 0.89630 0.87191 0.90918 0.73253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.67 8.13 37.16 0.30 -1.37 16 2 C -0.07 -0.75 2.35 -90.58 -0.21 -0.96 16 3 H 0.08 0.80 8.07 -51.93 -0.42 0.38 16 4 C -0.13 -1.27 5.63 -26.61 -0.15 -1.42 16 5 C 0.11 1.33 5.96 -3.71 -0.02 1.31 16 6 N -1.01 -14.79 3.23 -113.76 -0.37 -15.16 16 7 S 2.60 51.01 5.19 -107.50 -0.56 50.45 16 8 O -0.97 -20.30 16.59 -57.54 -0.95 -21.25 16 9 O -0.94 -21.72 16.24 -57.54 -0.93 -22.65 16 10 C -0.55 -11.31 6.03 37.16 0.22 -11.08 16 11 C 0.04 1.04 1.26 -155.66 -0.20 0.85 16 12 C -0.52 -13.89 8.17 -34.44 -0.28 -14.17 16 13 H 0.07 1.86 7.82 -52.49 -0.41 1.45 16 14 C 0.08 2.22 5.42 -17.82 -0.10 2.13 16 15 N -0.88 -23.77 13.10 55.43 0.73 -23.04 16 16 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 17 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 18 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 19 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 20 C -0.21 -4.45 9.96 -26.73 -0.27 -4.71 16 21 C -0.14 -3.22 9.67 -26.73 -0.26 -3.48 16 22 C 0.13 1.73 5.15 -3.93 -0.02 1.71 16 23 C -0.09 -1.07 2.55 -91.88 -0.23 -1.31 16 24 H 0.12 1.34 8.14 -51.93 -0.42 0.91 16 25 C 0.49 5.68 7.34 36.01 0.26 5.95 16 26 O -0.51 -6.72 14.50 -18.75 -0.27 -6.99 16 27 O -0.51 -5.19 13.35 -39.25 -0.52 -5.71 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.87 5.63 -51.93 -0.29 0.57 16 30 H 0.06 0.61 4.99 -51.93 -0.26 0.35 16 31 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.07 0.68 6.69 -51.93 -0.35 0.34 16 34 H 0.10 1.19 6.86 -51.93 -0.36 0.83 16 35 H 0.14 2.92 8.14 -51.92 -0.42 2.49 16 36 H 0.10 1.68 8.09 -51.92 -0.42 1.26 16 37 H 0.26 6.85 8.32 -40.82 -0.34 6.51 16 38 H 0.09 1.84 8.14 -51.93 -0.42 1.41 16 39 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 40 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 41 H 0.09 2.01 8.14 -51.93 -0.42 1.59 16 42 H 0.11 1.65 6.85 -51.93 -0.36 1.30 16 43 H 0.07 0.86 6.70 -51.93 -0.35 0.51 16 44 H 0.41 2.27 9.10 45.56 0.41 2.69 16 LS Contribution 363.08 15.07 5.47 5.47 Total: -1.00 -33.26 363.08 -9.12 -42.38 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -5.73 Total: 6.96 kcal Atomic # 6 Polarization: -25.63 SS G_CDS: -0.95 Total: -26.57 kcal Atomic # 7 Polarization: -38.56 SS G_CDS: 0.36 Total: -38.20 kcal Atomic # 8 Polarization: -53.92 SS G_CDS: -2.68 Total: -56.60 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: 51.01 SS G_CDS: -0.56 Total: 50.45 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.26 -9.12 -42.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569121329.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.514 kcal (2) G-P(sol) polarization free energy of solvation -33.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds