Wall clock time and date at job start Tue Mar 31 2020 16:24:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.46520 * 2 1 4 4 C 1.50704 * 109.87443 * 67.35368 * 3 2 1 5 5 O 1.20821 * 119.99628 * 332.90740 * 4 3 2 6 6 O 1.34226 * 120.00093 * 152.64073 * 4 3 2 7 7 C 1.54327 * 109.88639 * 306.33128 * 3 2 1 8 8 C 1.55548 * 102.75877 * 218.26738 * 7 3 2 9 9 C 1.54897 * 101.59916 * 35.53647 * 8 7 3 10 10 N 1.47026 * 109.88141 * 188.36629 * 3 2 1 11 11 S 1.65597 * 125.64534 * 298.47913 * 10 3 2 12 12 O 1.42103 * 104.27959 * 211.74862 * 11 10 3 13 13 O 1.42103 * 104.28064 * 339.60538 * 11 10 3 14 14 C 1.81403 * 104.45077 * 95.67807 * 11 10 3 15 15 C 1.53003 * 109.47257 * 177.60288 * 14 11 10 16 16 C 1.50699 * 115.54586 * 63.25477 * 15 14 11 17 17 H 1.08004 * 120.00227 * 264.87601 * 16 15 14 18 18 C 1.37880 * 120.00050 * 84.88428 * 16 15 14 19 19 N 1.31507 * 119.99863 * 1.64543 * 18 16 15 20 20 Si 1.86803 * 119.99713 * 181.64680 * 18 16 15 21 21 H 1.48499 * 109.47442 * 359.97438 * 20 18 16 22 22 H 1.48505 * 109.46962 * 120.00035 * 20 18 16 23 23 H 1.48498 * 109.46992 * 239.99430 * 20 18 16 24 24 C 1.52997 * 117.49878 * 277.58252 * 15 14 11 25 25 C 1.52997 * 117.49753 * 208.92308 * 15 14 11 26 26 H 1.09000 * 109.47086 * 292.03310 * 1 2 3 27 27 H 1.08996 * 109.47529 * 52.03890 * 1 2 3 28 28 H 1.08999 * 109.46995 * 172.03579 * 1 2 3 29 29 H 1.08999 * 109.47228 * 240.00689 * 2 1 3 30 30 H 1.08989 * 109.47089 * 120.00044 * 2 1 3 31 31 H 0.96704 * 116.99969 * 180.27356 * 6 4 3 32 32 H 1.09003 * 110.71766 * 336.60177 * 7 3 2 33 33 H 1.09004 * 110.71439 * 99.87328 * 7 3 2 34 34 H 1.08998 * 111.02832 * 277.43636 * 8 7 3 35 35 H 1.09006 * 110.99420 * 153.61585 * 8 7 3 36 36 H 1.09001 * 110.36773 * 204.11397 * 9 8 7 37 37 H 1.09000 * 110.46703 * 81.83894 * 9 8 7 38 38 H 1.08996 * 109.46734 * 297.60358 * 14 11 10 39 39 H 1.08995 * 109.46895 * 57.60680 * 14 11 10 40 40 H 0.97007 * 119.99980 * 185.01814 * 19 18 16 41 41 H 1.08998 * 117.49833 * 0.02562 * 24 15 14 42 42 H 1.09002 * 117.49523 * 145.02176 * 24 15 14 43 43 H 1.09000 * 117.49695 * 214.98114 * 25 15 14 44 44 H 1.08997 * 117.50297 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0398 1.4425 0.0000 4 6 1.6961 2.1074 1.3080 5 8 0.7367 1.7351 1.9410 6 8 2.4587 3.1096 1.7723 7 6 1.4041 2.2240 -1.1691 8 6 2.5758 3.1218 -1.6596 9 6 3.7935 2.1884 -1.4468 10 7 3.4962 1.4581 -0.2012 11 16 4.6169 0.7701 0.8053 12 8 5.7581 1.6081 0.6841 13 8 3.9369 0.6333 2.0456 14 6 4.9423 -0.8581 0.0747 15 6 6.0188 -1.5771 0.8903 16 6 5.6519 -1.8898 2.3181 17 1 5.9408 -1.2147 3.1102 18 6 4.9475 -3.0377 2.6134 19 7 4.6239 -3.8759 1.6532 20 14 4.4528 -3.4020 4.3775 21 1 4.9341 -2.3107 5.2622 22 1 2.9735 -3.4966 4.4673 23 1 5.0579 -4.6888 4.8055 24 6 7.4790 -1.2277 0.5963 25 6 6.9111 -2.5788 0.1546 26 1 -0.3633 0.3855 0.9526 27 1 -0.3634 0.6321 -0.8102 28 1 -0.3633 -1.0178 -0.1424 29 1 1.8934 -0.5137 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 2.2009 3.5022 2.6176 32 1 1.0818 1.5438 -1.9575 33 1 0.5703 2.8322 -0.8182 34 1 2.6614 4.0210 -1.0496 35 1 2.4582 3.3765 -2.7130 36 1 4.7057 2.7744 -1.3344 37 1 3.8908 1.4928 -2.2803 38 1 4.0263 -1.4488 0.0813 39 1 5.2869 -0.7334 -0.9517 40 1 4.0665 -4.6455 1.8485 41 1 7.6727 -0.4852 -0.1778 42 1 8.1744 -1.2243 1.4357 43 1 7.2332 -3.4637 0.7035 44 1 6.7311 -2.7258 -0.9103 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000573124876.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:24:04 Heat of formation + Delta-G solvation = -157.698472 kcal Electronic energy + Delta-G solvation = -29364.068683 eV Core-core repulsion = 25408.550787 eV Total energy + Delta-G solvation = -3955.517896 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.90641 -39.29590 -38.60468 -38.05362 -37.28021 -36.83756 -34.17933 -34.11666 -32.05240 -29.96726 -29.33485 -27.53350 -25.10580 -24.30808 -23.03633 -22.87002 -21.67539 -20.99195 -20.19300 -19.14314 -18.63131 -18.35562 -17.53578 -16.89711 -16.79555 -16.62098 -16.50980 -15.78684 -15.60116 -15.36143 -15.02436 -14.85191 -14.71973 -14.01882 -13.89578 -13.85161 -13.71335 -13.20252 -13.12933 -13.02085 -12.98235 -12.93063 -12.90350 -12.69125 -12.53741 -12.50505 -12.32517 -12.24085 -12.05918 -11.98203 -11.87688 -11.68865 -11.52421 -11.14625 -11.03484 -10.54371 -10.22704 -9.83129 -8.24256 -6.38210 -0.67544 1.12111 1.29645 1.34343 1.44866 1.80242 2.07425 2.34785 2.95680 3.01504 3.14987 3.36238 3.36912 3.52519 3.73746 3.96702 4.18674 4.19544 4.20621 4.27952 4.34271 4.46987 4.54530 4.57996 4.69817 4.74916 4.80105 4.84743 4.90394 4.95087 5.02576 5.07777 5.11437 5.18474 5.22143 5.30286 5.37118 5.40947 5.48970 5.59766 5.66931 5.71629 6.17729 6.67654 6.94084 7.34237 8.82969 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.013718 B = 0.005989 C = 0.005106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2040.571891 B = 4674.497772 C = 5482.654243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.140 4.140 3 C 0.191 3.809 4 C 0.477 3.523 5 O -0.534 6.534 6 O -0.512 6.512 7 C -0.107 4.107 8 C -0.118 4.118 9 C 0.096 3.904 10 N -1.004 6.004 11 S 2.628 3.372 12 O -0.987 6.987 13 O -0.983 6.983 14 C -0.550 4.550 15 C 0.005 3.995 16 C -0.529 4.529 17 H 0.044 0.956 18 C 0.047 3.953 19 N -0.888 5.888 20 Si 0.926 3.074 21 H -0.277 1.277 22 H -0.278 1.278 23 H -0.267 1.267 24 C -0.200 4.200 25 C -0.128 4.128 26 H 0.058 0.942 27 H 0.089 0.911 28 H 0.064 0.936 29 H 0.108 0.892 30 H 0.037 0.963 31 H 0.420 0.580 32 H 0.127 0.873 33 H 0.094 0.906 34 H 0.073 0.927 35 H 0.128 0.872 36 H 0.080 0.920 37 H 0.101 0.899 38 H 0.122 0.878 39 H 0.137 0.863 40 H 0.265 0.735 41 H 0.100 0.900 42 H 0.080 0.920 43 H 0.067 0.933 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.492 12.256 -12.997 19.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.179 4.179 3 C 0.101 3.899 4 C 0.319 3.681 5 O -0.423 6.423 6 O -0.325 6.325 7 C -0.145 4.145 8 C -0.156 4.156 9 C -0.028 4.028 10 N -0.842 5.842 11 S 2.728 3.272 12 O -0.977 6.977 13 O -0.974 6.974 14 C -0.683 4.683 15 C 0.002 3.998 16 C -0.566 4.566 17 H 0.062 0.938 18 C -0.156 4.156 19 N -0.524 5.524 20 Si 0.751 3.249 21 H -0.202 1.202 22 H -0.204 1.204 23 H -0.192 1.192 24 C -0.238 4.238 25 C -0.167 4.167 26 H 0.077 0.923 27 H 0.108 0.892 28 H 0.083 0.917 29 H 0.127 0.873 30 H 0.056 0.944 31 H 0.280 0.720 32 H 0.145 0.855 33 H 0.113 0.887 34 H 0.092 0.908 35 H 0.146 0.854 36 H 0.098 0.902 37 H 0.119 0.881 38 H 0.141 0.859 39 H 0.156 0.844 40 H 0.075 0.925 41 H 0.119 0.881 42 H 0.099 0.901 43 H 0.086 0.914 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -7.237 12.192 -12.370 18.816 hybrid contribution -0.356 -0.878 1.942 2.161 sum -7.593 11.314 -10.428 17.158 Atomic orbital electron populations 1.21958 0.92234 1.03085 1.03872 1.22100 0.99695 0.92743 1.03352 1.20873 0.81495 0.96394 0.91098 1.24239 0.79252 0.76770 0.87830 1.90609 1.30171 1.62651 1.58824 1.84505 1.56554 1.48115 1.43290 1.22954 0.98443 0.98629 0.94488 1.22909 0.91353 0.96971 1.04382 1.22533 1.00421 0.95261 0.84547 1.58862 1.15408 1.69926 1.39986 1.04321 0.72587 0.76562 0.73710 1.93449 1.51474 1.65944 1.86860 1.93478 1.73892 1.87561 1.42437 1.29953 1.09213 1.19037 1.10120 1.18424 0.86473 1.00922 0.93939 1.20696 1.37822 1.06829 0.91279 0.93810 1.25398 0.95161 0.95103 0.99918 1.70025 1.35686 1.13663 1.33046 0.85998 0.78441 0.78262 0.82159 1.20209 1.20382 1.19243 1.23278 0.97467 0.99814 1.03197 1.22471 1.03537 0.92018 0.98665 0.92331 0.89184 0.91708 0.87327 0.94395 0.71971 0.85487 0.88715 0.90837 0.85379 0.90193 0.88135 0.85928 0.84446 0.92543 0.88122 0.90092 0.91425 0.89063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.76 9.35 71.98 0.67 -3.08 16 2 C -0.14 -4.09 4.70 30.59 0.14 -3.94 16 3 C 0.19 5.25 0.57 3.21 0.00 5.25 16 4 C 0.48 15.83 5.36 71.24 0.38 16.21 16 5 O -0.53 -19.98 14.58 21.98 0.32 -19.66 16 6 O -0.51 -15.61 12.77 -49.01 -0.63 -16.23 16 7 C -0.11 -1.67 4.73 31.92 0.15 -1.52 16 8 C -0.12 -1.58 7.10 32.12 0.23 -1.35 16 9 C 0.10 1.90 7.11 86.85 0.62 2.52 16 10 N -1.00 -29.91 2.77 -466.74 -1.29 -31.20 16 11 S 2.63 109.07 5.09 -56.49 -0.29 108.78 16 12 O -0.99 -43.81 17.39 -127.65 -2.22 -46.03 16 13 O -0.98 -49.13 14.75 -124.71 -1.84 -50.97 16 14 C -0.55 -22.59 6.04 71.98 0.43 -22.15 16 15 C 0.00 0.23 1.41 -52.93 -0.07 0.15 16 16 C -0.53 -29.93 7.90 25.60 0.20 -29.73 16 17 H 0.04 2.61 7.81 -2.91 -0.02 2.59 16 18 C 0.05 2.64 5.42 84.66 0.46 3.10 16 19 N -0.89 -49.21 12.72 21.45 0.27 -48.94 16 20 Si 0.93 45.69 29.54 68.60 2.03 47.72 16 21 H -0.28 -13.99 7.11 99.48 0.71 -13.28 16 22 H -0.28 -13.58 7.11 99.48 0.71 -12.87 16 23 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 24 C -0.20 -8.64 9.96 30.62 0.30 -8.34 16 25 C -0.13 -5.71 9.23 30.62 0.28 -5.43 16 26 H 0.06 1.75 5.73 -2.39 -0.01 1.74 16 27 H 0.09 1.51 6.40 -2.39 -0.02 1.49 16 28 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.11 2.58 8.14 -2.39 -0.02 2.56 16 30 H 0.04 1.46 7.68 -2.39 -0.02 1.44 16 31 H 0.42 9.47 9.10 -74.05 -0.67 8.80 16 32 H 0.13 1.25 7.25 -2.39 -0.02 1.23 16 33 H 0.09 1.33 7.82 -2.38 -0.02 1.31 16 34 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.13 0.74 8.14 -2.38 -0.02 0.73 16 36 H 0.08 1.71 7.71 -2.39 -0.02 1.70 16 37 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.12 5.25 8.09 -2.39 -0.02 5.23 16 39 H 0.14 4.42 8.10 -2.39 -0.02 4.40 16 40 H 0.27 13.97 8.32 -92.70 -0.77 13.20 16 41 H 0.10 3.77 8.14 -2.39 -0.02 3.75 16 42 H 0.08 3.53 8.14 -2.39 -0.02 3.51 16 43 H 0.07 3.29 8.14 -2.39 -0.02 3.27 16 44 H 0.09 3.56 8.14 -2.39 -0.02 3.54 16 Total: -1.00 -78.84 367.10 0.50 -78.34 By element: Atomic # 1 Polarization: 26.16 SS G_CDS: 0.34 Total: 26.50 kcal Atomic # 6 Polarization: -52.11 SS G_CDS: 3.81 Total: -48.30 kcal Atomic # 7 Polarization: -79.11 SS G_CDS: -1.02 Total: -80.13 kcal Atomic # 8 Polarization: -128.53 SS G_CDS: -4.37 Total: -132.90 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.72 kcal Atomic # 16 Polarization: 109.07 SS G_CDS: -0.29 Total: 108.78 kcal Total: -78.84 0.50 -78.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573124876.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.359 kcal (2) G-P(sol) polarization free energy of solvation -78.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds