Wall clock time and date at job start Tue Mar 31 2020 16:24:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52993 * 109.47591 * 2 1 4 4 C 1.50693 * 110.00110 * 186.44777 * 3 2 1 5 5 O 1.20829 * 119.99978 * 19.02518 * 4 3 2 6 6 O 1.34227 * 120.00170 * 199.02117 * 4 3 2 7 7 C 1.54326 * 109.88081 * 307.54786 * 3 2 1 8 8 C 1.55154 * 102.94435 * 97.22159 * 7 3 2 9 9 C 1.54909 * 101.58227 * 35.50432 * 8 7 3 10 10 N 1.47294 * 109.85755 * 65.37746 * 3 2 1 11 11 S 1.65599 * 125.78711 * 59.50309 * 10 3 2 12 12 O 1.42095 * 104.28222 * 26.09993 * 11 10 3 13 13 O 1.42101 * 104.27405 * 153.95624 * 11 10 3 14 14 C 1.81402 * 104.44934 * 270.02246 * 11 10 3 15 15 C 1.53006 * 109.46872 * 171.13816 * 14 11 10 16 16 C 1.50693 * 115.55037 * 52.83011 * 15 14 11 17 17 H 1.08006 * 120.00038 * 265.57178 * 16 15 14 18 18 C 1.37877 * 120.00127 * 85.57611 * 16 15 14 19 19 N 1.31522 * 119.99490 * 358.86883 * 18 16 15 20 20 Si 1.86790 * 120.00215 * 178.86985 * 18 16 15 21 21 H 1.48508 * 109.47144 * 90.00132 * 20 18 16 22 22 H 1.48501 * 109.47477 * 209.99615 * 20 18 16 23 23 H 1.48502 * 109.47476 * 329.99810 * 20 18 16 24 24 C 1.53008 * 117.49434 * 267.15926 * 15 14 11 25 25 C 1.52998 * 117.49612 * 198.50437 * 15 14 11 26 26 H 1.09007 * 109.46449 * 312.55271 * 1 2 3 27 27 H 1.08996 * 109.47147 * 72.54987 * 1 2 3 28 28 H 1.08999 * 109.47012 * 192.55709 * 1 2 3 29 29 H 1.09009 * 109.46908 * 239.99838 * 2 1 3 30 30 H 1.08999 * 109.47319 * 120.00871 * 2 1 3 31 31 H 0.96708 * 117.00134 * 179.97438 * 6 4 3 32 32 H 1.08997 * 110.72196 * 338.85537 * 7 3 2 33 33 H 1.09005 * 110.71622 * 215.58704 * 7 3 2 34 34 H 1.09000 * 111.00354 * 277.42681 * 8 7 3 35 35 H 1.09001 * 111.03654 * 153.59054 * 8 7 3 36 36 H 1.08995 * 110.37082 * 81.82455 * 9 8 7 37 37 H 1.08997 * 110.36654 * 204.04854 * 9 8 7 38 38 H 1.08993 * 109.47466 * 291.13729 * 14 11 10 39 39 H 1.08996 * 109.46940 * 51.14253 * 14 11 10 40 40 H 0.97002 * 119.99189 * 185.04083 * 19 18 16 41 41 H 1.08991 * 117.50248 * 0.02562 * 24 15 14 42 42 H 1.09002 * 117.49183 * 145.02521 * 24 15 14 43 43 H 1.09001 * 117.49664 * 214.98065 * 25 15 14 44 44 H 1.09004 * 117.50164 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5386 1.4592 -0.1590 5 8 4.1102 0.4902 -0.5997 6 8 4.2382 2.5506 0.1888 7 6 1.3813 2.2321 -1.1506 8 6 0.2083 2.9618 -0.4443 9 6 0.8275 3.2785 0.9399 10 7 1.6628 2.1065 1.2594 11 16 2.1020 1.6200 2.7801 12 8 3.3188 0.9128 2.5842 13 8 2.0635 2.8113 3.5539 14 6 0.7817 0.4860 3.2915 15 6 1.1810 -0.2062 4.5963 16 6 1.5944 0.7108 5.7184 17 1 2.6386 0.9412 5.8707 18 6 0.6398 1.2556 6.5508 19 7 -0.6334 0.9927 6.3518 20 14 1.1547 2.3670 7.9610 21 1 1.1927 3.7757 7.4926 22 1 0.1779 2.2412 9.0725 23 1 2.5027 1.9678 8.4392 24 6 1.8904 -1.5578 4.4906 25 6 0.4384 -1.4905 4.9706 26 1 -0.3632 0.6950 0.7571 27 1 -0.3633 0.3082 -0.9803 28 1 -0.3633 -1.0031 0.2234 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5140 0.8899 31 1 5.1972 2.5140 0.0690 32 1 1.0076 1.5549 -1.9187 33 1 2.0821 2.9503 -1.5762 34 1 -0.6565 2.3059 -0.3447 35 1 -0.0573 3.8777 -0.9723 36 1 1.4410 4.1777 0.8843 37 1 0.0435 3.4006 1.6872 38 1 -0.1400 1.0470 3.4452 39 1 0.6258 -0.2635 2.5156 40 1 -1.3094 1.4329 6.8904 41 1 2.0730 -1.9536 3.4916 42 1 2.6558 -1.7838 5.2330 43 1 0.2492 -1.6723 6.0286 44 1 -0.3349 -1.8421 4.2875 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000573124877.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:24:07 Heat of formation + Delta-G solvation = -159.177515 kcal Electronic energy + Delta-G solvation = -29464.490418 eV Core-core repulsion = 25508.908386 eV Total energy + Delta-G solvation = -3955.582032 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.88892 -39.57886 -38.62082 -38.05614 -37.21983 -36.85666 -34.13829 -33.81104 -32.05645 -30.30469 -29.56717 -27.54550 -25.22409 -24.00534 -23.00241 -22.73575 -21.78344 -21.15956 -19.84625 -19.15657 -18.68904 -18.31083 -17.56860 -17.18284 -16.82807 -16.72540 -16.47222 -16.11468 -15.56084 -15.41054 -15.01321 -14.65713 -14.62042 -14.15973 -13.78277 -13.73638 -13.62860 -13.19511 -13.11944 -13.00021 -12.97217 -12.95487 -12.88524 -12.68675 -12.57383 -12.49931 -12.45134 -12.22885 -12.10100 -11.95910 -11.87515 -11.59958 -11.47896 -11.31164 -10.99407 -10.55480 -10.27767 -9.85572 -8.25450 -6.43092 -0.67971 1.07866 1.33671 1.38264 1.44596 1.83810 2.03930 2.35993 2.94729 3.01611 3.13377 3.35628 3.37221 3.57453 3.77362 3.91205 4.14017 4.17055 4.20752 4.26271 4.31540 4.48301 4.54632 4.59972 4.67382 4.76296 4.78180 4.89791 4.93080 4.95755 5.01648 5.03787 5.11508 5.16189 5.23272 5.31302 5.37304 5.43437 5.50810 5.55756 5.58311 5.64241 6.16009 6.64171 6.90712 7.32230 8.81537 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.016542 B = 0.005231 C = 0.005058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.225629 B = 5351.730589 C = 5534.994362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.137 4.137 3 C 0.186 3.814 4 C 0.476 3.524 5 O -0.538 6.538 6 O -0.512 6.512 7 C -0.107 4.107 8 C -0.116 4.116 9 C 0.102 3.898 10 N -1.001 6.001 11 S 2.629 3.371 12 O -0.993 6.993 13 O -0.985 6.985 14 C -0.546 4.546 15 C 0.011 3.989 16 C -0.549 4.549 17 H 0.042 0.958 18 C 0.051 3.949 19 N -0.885 5.885 20 Si 0.927 3.073 21 H -0.276 1.276 22 H -0.266 1.266 23 H -0.271 1.271 24 C -0.197 4.197 25 C -0.128 4.128 26 H 0.060 0.940 27 H 0.098 0.902 28 H 0.069 0.931 29 H 0.104 0.896 30 H 0.044 0.956 31 H 0.421 0.579 32 H 0.123 0.877 33 H 0.089 0.911 34 H 0.102 0.898 35 H 0.118 0.882 36 H 0.072 0.928 37 H 0.079 0.921 38 H 0.126 0.874 39 H 0.134 0.866 40 H 0.268 0.732 41 H 0.095 0.905 42 H 0.078 0.922 43 H 0.067 0.933 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.810 2.678 -18.695 19.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.176 4.176 3 C 0.097 3.903 4 C 0.318 3.682 5 O -0.427 6.427 6 O -0.325 6.325 7 C -0.146 4.146 8 C -0.154 4.154 9 C -0.022 4.022 10 N -0.839 5.839 11 S 2.730 3.270 12 O -0.984 6.984 13 O -0.975 6.975 14 C -0.680 4.680 15 C 0.009 3.991 16 C -0.586 4.586 17 H 0.060 0.940 18 C -0.153 4.153 19 N -0.520 5.520 20 Si 0.752 3.248 21 H -0.202 1.202 22 H -0.190 1.190 23 H -0.195 1.195 24 C -0.234 4.234 25 C -0.167 4.167 26 H 0.079 0.921 27 H 0.116 0.884 28 H 0.088 0.912 29 H 0.123 0.877 30 H 0.063 0.937 31 H 0.282 0.718 32 H 0.141 0.859 33 H 0.107 0.893 34 H 0.120 0.880 35 H 0.137 0.863 36 H 0.090 0.910 37 H 0.097 0.903 38 H 0.144 0.856 39 H 0.152 0.848 40 H 0.078 0.922 41 H 0.113 0.887 42 H 0.096 0.904 43 H 0.086 0.914 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.424 2.730 -18.098 18.463 hybrid contribution 0.892 0.195 1.331 1.614 sum -1.532 2.924 -16.767 17.089 Atomic orbital electron populations 1.22064 0.91625 1.03277 1.04490 1.22053 0.99268 0.92091 1.04152 1.21002 0.85036 0.96643 0.87643 1.24254 0.92315 0.79409 0.72247 1.90650 1.72225 1.35834 1.43944 1.84514 1.27599 1.41492 1.78856 1.22828 0.97989 0.99302 0.94460 1.23015 0.97298 1.02828 0.92302 1.22376 0.93338 0.87033 0.99441 1.58942 1.66886 1.38909 1.19210 1.04249 0.76259 0.75049 0.71446 1.93444 1.43712 1.76275 1.84949 1.93470 1.87650 1.46990 1.69382 1.29967 1.17062 1.14704 1.06239 1.18355 1.02244 0.87204 0.91339 1.20707 0.92922 1.30433 1.14523 0.93983 1.25452 0.95057 0.96211 0.98566 1.70007 0.99931 1.41097 1.40982 0.86022 0.78868 0.79952 0.79978 1.20154 1.19023 1.19542 1.23194 0.96034 1.02599 1.01588 1.22458 0.92734 1.01508 0.99965 0.92064 0.88355 0.91169 0.87721 0.93690 0.71799 0.85856 0.89262 0.87966 0.86350 0.90986 0.90294 0.85570 0.84765 0.92249 0.88707 0.90367 0.91396 0.89113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.69 7.28 71.98 0.52 -2.17 16 2 C -0.14 -3.28 4.25 30.59 0.13 -3.15 16 3 C 0.19 4.77 0.66 3.15 0.00 4.77 16 4 C 0.48 14.84 5.39 71.23 0.38 15.22 16 5 O -0.54 -19.02 16.69 21.95 0.37 -18.65 16 6 O -0.51 -14.70 13.23 -51.39 -0.68 -15.38 16 7 C -0.11 -1.59 5.48 31.78 0.17 -1.41 16 8 C -0.12 -1.48 6.36 31.99 0.20 -1.27 16 9 C 0.10 2.37 6.77 86.86 0.59 2.96 16 10 N -1.00 -30.70 2.22 -466.20 -1.03 -31.73 16 11 S 2.63 113.63 4.46 -56.49 -0.25 113.38 16 12 O -0.99 -47.38 15.87 -127.65 -2.03 -49.40 16 13 O -0.98 -50.41 17.07 -127.65 -2.18 -52.59 16 14 C -0.55 -22.72 5.74 71.98 0.41 -22.31 16 15 C 0.01 0.53 1.53 -52.93 -0.08 0.45 16 16 C -0.55 -31.18 7.61 25.60 0.19 -30.98 16 17 H 0.04 2.52 7.81 -2.91 -0.02 2.49 16 18 C 0.05 2.86 5.41 84.65 0.46 3.32 16 19 N -0.88 -48.62 12.76 21.45 0.27 -48.34 16 20 Si 0.93 44.84 29.54 68.60 2.03 46.86 16 21 H -0.28 -13.46 7.11 99.48 0.71 -12.76 16 22 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 23 H -0.27 -13.02 7.11 99.48 0.71 -12.32 16 24 C -0.20 -8.69 9.92 30.62 0.30 -8.38 16 25 C -0.13 -5.75 9.29 30.62 0.28 -5.46 16 26 H 0.06 1.14 5.63 -2.38 -0.01 1.13 16 27 H 0.10 0.99 6.61 -2.39 -0.02 0.97 16 28 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.10 2.24 7.70 -2.38 -0.02 2.22 16 30 H 0.04 1.34 6.37 -2.39 -0.02 1.33 16 31 H 0.42 8.61 9.10 -74.05 -0.67 7.93 16 32 H 0.12 1.12 7.01 -2.39 -0.02 1.10 16 33 H 0.09 1.23 7.84 -2.38 -0.02 1.21 16 34 H 0.10 1.03 5.88 -2.39 -0.01 1.02 16 35 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 38 H 0.13 5.31 8.14 -2.39 -0.02 5.29 16 39 H 0.13 4.55 5.37 -2.39 -0.01 4.54 16 40 H 0.27 13.91 8.32 -92.71 -0.77 13.14 16 41 H 0.09 3.67 8.14 -2.39 -0.02 3.65 16 42 H 0.08 3.51 8.14 -2.39 -0.02 3.49 16 43 H 0.07 3.31 8.14 -2.39 -0.02 3.29 16 44 H 0.09 3.58 8.14 -2.39 -0.02 3.56 16 Total: -1.00 -79.24 359.77 0.43 -78.81 By element: Atomic # 1 Polarization: 25.12 SS G_CDS: 0.35 Total: 25.47 kcal Atomic # 6 Polarization: -52.00 SS G_CDS: 3.58 Total: -48.42 kcal Atomic # 7 Polarization: -79.31 SS G_CDS: -0.76 Total: -80.08 kcal Atomic # 8 Polarization: -131.51 SS G_CDS: -4.52 Total: -136.02 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.86 kcal Atomic # 16 Polarization: 113.63 SS G_CDS: -0.25 Total: 113.38 kcal Total: -79.24 0.43 -78.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573124877.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.366 kcal (2) G-P(sol) polarization free energy of solvation -79.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds