Wall clock time and date at job start Tue Mar 31 2020 16:12:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 110.63994 * 2 1 4 4 C 1.55162 * 110.71921 * 236.86506 * 2 1 3 5 5 C 1.55396 * 101.36257 * 277.04270 * 4 2 1 6 6 N 1.47431 * 104.87128 * 323.01271 * 5 4 2 7 7 S 1.65598 * 125.64710 * 204.09649 * 6 5 4 8 8 O 1.42100 * 104.27618 * 39.28175 * 7 6 5 9 9 O 1.42102 * 104.27583 * 167.13954 * 7 6 5 10 10 C 1.81397 * 104.45119 * 283.20999 * 7 6 5 11 11 C 1.52997 * 109.47245 * 170.98330 * 10 7 6 12 12 C 1.50707 * 115.54670 * 65.47029 * 11 10 7 13 13 H 1.08001 * 119.99799 * 264.42324 * 12 11 10 14 14 C 1.37872 * 120.00032 * 84.42331 * 12 11 10 15 15 N 1.31510 * 120.00038 * 175.49383 * 14 12 11 16 16 Si 1.86804 * 119.99934 * 355.49649 * 14 12 11 17 17 H 1.48496 * 109.46953 * 88.93670 * 16 14 12 18 18 H 1.48501 * 109.46911 * 208.93509 * 16 14 12 19 19 H 1.48499 * 109.47418 * 328.93378 * 16 14 12 20 20 C 1.52995 * 117.49862 * 279.80005 * 11 10 7 21 21 C 1.53003 * 117.49992 * 211.13632 * 11 10 7 22 22 C 1.47024 * 108.70036 * 24.13639 * 6 5 4 23 23 H 1.08997 * 109.87776 * 239.51839 * 22 6 5 24 24 C 1.50697 * 110.00909 * 118.43066 * 22 6 5 25 25 O 1.20825 * 120.00370 * 326.05621 * 24 22 6 26 26 O 1.34236 * 120.00200 * 146.06032 * 24 22 6 27 27 H 1.08994 * 109.47385 * 59.29511 * 1 2 3 28 28 H 1.09002 * 109.46514 * 299.29637 * 1 2 3 29 29 H 1.08996 * 109.47154 * 179.30058 * 1 2 3 30 30 H 1.09002 * 109.47508 * 60.70656 * 3 2 1 31 31 H 1.09010 * 109.47049 * 180.70382 * 3 2 1 32 32 H 1.09006 * 109.47491 * 300.70024 * 3 2 1 33 33 H 1.09001 * 111.00300 * 35.20468 * 4 2 1 34 34 H 1.08995 * 111.01008 * 159.06189 * 4 2 1 35 35 H 1.09000 * 110.33724 * 204.16823 * 5 4 2 36 36 H 1.09001 * 110.34854 * 81.86709 * 5 4 2 37 37 H 1.09000 * 109.46900 * 290.98723 * 10 7 6 38 38 H 1.09003 * 109.47307 * 50.98396 * 10 7 6 39 39 H 0.97001 * 119.99997 * 180.02562 * 15 14 12 40 40 H 1.08996 * 117.50282 * 0.02562 * 20 11 10 41 41 H 1.09002 * 117.49557 * 145.02211 * 20 11 10 42 42 H 1.08999 * 117.50089 * 214.97949 * 21 11 10 43 43 H 1.08995 * 117.49850 * 359.97438 * 21 11 10 44 44 H 0.96697 * 117.00084 * 179.97438 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0693 1.4318 0.0000 4 6 2.0790 -0.7933 -1.2153 5 6 2.0126 -2.2521 -0.6839 6 7 2.3717 -2.1519 0.7425 7 16 3.0025 -3.3725 1.6669 8 8 3.9135 -4.0338 0.7997 9 8 3.4549 -2.7211 2.8460 10 6 1.5838 -4.4414 2.0346 11 6 2.0743 -5.7299 2.6978 12 6 2.7039 -5.5624 4.0568 13 1 3.7769 -5.4806 4.1485 14 6 1.9101 -5.5136 5.1830 15 7 2.4627 -5.4568 6.3751 16 14 0.0496 -5.5284 5.0158 17 1 -0.4357 -6.9318 5.0099 18 1 -0.5559 -4.8000 6.1594 19 1 -0.3385 -4.8651 3.7451 20 6 2.6387 -6.8224 1.7875 21 6 1.2685 -7.0057 2.4449 22 6 2.0761 -0.7892 1.2084 23 1 2.9869 -0.3181 1.5779 24 6 1.0411 -0.8316 2.3029 25 8 0.1706 -1.6692 2.2791 26 8 1.0860 0.0612 3.3043 27 1 -0.3634 0.5247 -0.8835 28 1 -0.3632 0.5029 0.8963 29 1 -0.3633 -1.0275 -0.0125 30 1 1.7269 1.9491 0.8962 31 1 3.1591 1.4095 -0.0126 32 1 1.7064 1.9568 -0.8837 33 1 1.4395 -0.6626 -2.0883 34 1 3.1061 -0.5048 -1.4386 35 1 2.7293 -2.8807 -1.2123 36 1 1.0038 -2.6501 -0.7941 37 1 0.9028 -3.9221 2.7089 38 1 1.0626 -4.6850 1.1087 39 1 1.9042 -5.4228 7.1674 40 1 2.6610 -6.6230 0.7162 41 1 3.4652 -7.4203 2.1717 42 1 1.1941 -7.7242 3.2613 43 1 0.3887 -6.9270 1.8064 44 1 0.4005 -0.0054 3.9830 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000574089555.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:12:17 Heat of formation + Delta-G solvation = -158.875846 kcal Electronic energy + Delta-G solvation = -29223.891824 eV Core-core repulsion = 25268.322873 eV Total energy + Delta-G solvation = -3955.568951 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 2.11 seconds Orbital eigenvalues (eV) -41.99508 -39.60087 -38.91232 -38.16392 -37.14245 -36.99282 -34.58001 -34.37763 -31.14200 -30.19718 -28.28577 -27.94707 -27.52870 -24.25326 -23.39360 -22.94955 -21.27398 -20.33705 -19.98973 -19.33854 -18.74048 -18.63063 -17.68958 -17.38461 -16.98304 -16.81367 -16.58802 -15.92819 -15.62071 -15.14347 -14.94041 -14.73513 -14.68644 -14.62879 -14.10714 -14.00886 -13.84918 -13.54903 -13.30774 -13.17074 -13.13056 -12.94566 -12.73014 -12.66042 -12.52408 -12.49618 -12.40146 -12.33288 -12.13467 -11.85365 -11.77793 -11.74718 -11.56903 -11.39192 -11.04777 -10.79957 -10.47726 -10.05224 -8.40826 -6.53244 -0.81279 0.96755 1.25479 1.29289 1.41287 1.63638 2.05915 2.26894 2.75312 2.87935 2.98948 3.10904 3.25636 3.50545 3.74054 3.79815 4.04501 4.07147 4.17273 4.22985 4.25733 4.31981 4.35518 4.52973 4.58896 4.63628 4.75823 4.80277 4.84373 4.92811 4.96845 4.99611 5.03673 5.14674 5.15836 5.19307 5.27738 5.38368 5.39914 5.46069 5.50442 5.54404 6.11355 6.57215 6.84330 7.19739 8.75139 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.015941 B = 0.005697 C = 0.004996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.094402 B = 4913.643664 C = 5603.522520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.053 4.053 3 C -0.138 4.138 4 C -0.105 4.105 5 C 0.093 3.907 6 N -1.000 6.000 7 S 2.624 3.376 8 O -0.974 6.974 9 O -0.989 6.989 10 C -0.565 4.565 11 C -0.039 4.039 12 C -0.514 4.514 13 H 0.031 0.969 14 C 0.033 3.967 15 N -0.936 5.936 16 Si 0.925 3.075 17 H -0.254 1.254 18 H -0.293 1.293 19 H -0.230 1.230 20 C -0.166 4.166 21 C -0.167 4.167 22 C 0.158 3.842 23 H 0.107 0.893 24 C 0.463 3.537 25 O -0.529 6.529 26 O -0.509 6.509 27 H 0.096 0.904 28 H 0.045 0.955 29 H 0.055 0.945 30 H 0.059 0.941 31 H 0.067 0.933 32 H 0.093 0.907 33 H 0.125 0.875 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.085 0.915 37 H 0.123 0.877 38 H 0.148 0.852 39 H 0.269 0.731 40 H 0.113 0.887 41 H 0.085 0.915 42 H 0.082 0.918 43 H 0.114 0.886 44 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.827 14.175 -19.178 25.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.055 4.055 3 C -0.196 4.196 4 C -0.143 4.143 5 C -0.030 4.030 6 N -0.838 5.838 7 S 2.724 3.276 8 O -0.965 6.965 9 O -0.979 6.979 10 C -0.698 4.698 11 C -0.042 4.042 12 C -0.552 4.552 13 H 0.050 0.950 14 C -0.167 4.167 15 N -0.574 5.574 16 Si 0.748 3.252 17 H -0.178 1.178 18 H -0.219 1.219 19 H -0.153 1.153 20 C -0.203 4.203 21 C -0.205 4.205 22 C 0.050 3.950 23 H 0.125 0.875 24 C 0.304 3.696 25 O -0.419 6.419 26 O -0.321 6.321 27 H 0.115 0.885 28 H 0.064 0.936 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.112 0.888 33 H 0.143 0.857 34 H 0.112 0.888 35 H 0.112 0.888 36 H 0.103 0.897 37 H 0.141 0.859 38 H 0.166 0.834 39 H 0.079 0.921 40 H 0.132 0.868 41 H 0.103 0.897 42 H 0.101 0.899 43 H 0.132 0.868 44 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges -6.807 13.857 -18.977 24.464 hybrid contribution -1.464 -0.550 1.828 2.405 sum -8.271 13.307 -17.149 23.229 Atomic orbital electron populations 1.22017 0.92492 1.02700 1.03123 1.21697 0.96801 0.96127 0.90880 1.21879 1.01707 0.92174 1.03830 1.23064 1.03790 0.90557 0.96913 1.22666 1.01946 1.00941 0.77472 1.58715 1.80840 1.22011 1.22278 1.04420 0.76773 0.74010 0.72399 1.93471 1.60483 1.75961 1.66535 1.93511 1.80375 1.74146 1.49875 1.30195 1.18260 1.11322 1.09989 1.18820 1.03714 0.86429 0.95219 1.20445 0.93129 1.51965 0.89616 0.95025 1.25822 1.03911 0.92675 0.94282 1.70040 1.38056 1.50439 0.98825 0.86101 0.79772 0.80038 0.79307 1.17793 1.21921 1.15266 1.23088 0.96898 1.02082 0.98218 1.23093 0.95153 0.99398 1.02901 1.21335 0.96263 0.84476 0.92972 0.87494 1.24280 0.85244 0.77815 0.82269 1.90698 1.37168 1.37121 1.76904 1.84477 1.57315 1.54658 1.35689 0.88482 0.93613 0.92547 0.92218 0.91405 0.88805 0.85706 0.88760 0.88783 0.89661 0.85921 0.83376 0.92148 0.86835 0.89690 0.89920 0.86810 0.71354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.29 7.30 71.98 0.53 -1.76 16 2 C -0.05 -0.87 0.83 -50.99 -0.04 -0.91 16 3 C -0.14 -1.62 8.48 71.98 0.61 -1.01 16 4 C -0.10 -1.34 6.06 32.16 0.19 -1.14 16 5 C 0.09 1.88 6.85 87.03 0.60 2.48 16 6 N -1.00 -30.38 3.05 -487.22 -1.48 -31.86 16 7 S 2.62 111.45 5.10 -56.49 -0.29 111.16 16 8 O -0.97 -42.88 17.58 -127.65 -2.24 -45.13 16 9 O -0.99 -51.27 17.00 -127.65 -2.17 -53.44 16 10 C -0.57 -23.63 5.46 71.98 0.39 -23.23 16 11 C -0.04 -1.87 0.80 -52.93 -0.04 -1.91 16 12 C -0.51 -30.93 8.90 25.60 0.23 -30.70 16 13 H 0.03 2.16 8.06 -2.91 -0.02 2.14 16 14 C 0.03 1.99 5.47 84.65 0.46 2.46 16 15 N -0.94 -60.73 13.96 21.44 0.30 -60.43 16 16 Si 0.92 45.28 25.25 68.60 1.73 47.01 16 17 H -0.25 -11.51 7.11 99.48 0.71 -10.80 16 18 H -0.29 -14.30 7.11 99.48 0.71 -13.59 16 19 H -0.23 -10.38 5.37 99.48 0.53 -9.84 16 20 C -0.17 -6.77 9.96 30.62 0.30 -6.47 16 21 C -0.17 -6.71 7.83 30.62 0.24 -6.47 16 22 C 0.16 4.27 2.69 44.59 0.12 4.39 16 23 H 0.11 2.93 7.82 -2.39 -0.02 2.91 16 24 C 0.46 14.26 5.08 71.23 0.36 14.63 16 25 O -0.53 -18.46 14.92 21.97 0.33 -18.13 16 26 O -0.51 -13.60 13.42 -51.48 -0.69 -14.29 16 27 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.04 0.81 7.14 -2.39 -0.02 0.79 16 29 H 0.06 1.08 6.78 -2.39 -0.02 1.07 16 30 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 32 H 0.09 0.63 8.14 -2.38 -0.02 0.61 16 33 H 0.12 0.78 8.04 -2.39 -0.02 0.76 16 34 H 0.09 1.06 8.05 -2.39 -0.02 1.05 16 35 H 0.09 1.83 7.82 -2.39 -0.02 1.81 16 36 H 0.09 1.46 7.73 -2.39 -0.02 1.44 16 37 H 0.12 5.53 4.71 -2.39 -0.01 5.52 16 38 H 0.15 4.75 8.09 -2.39 -0.02 4.73 16 39 H 0.27 16.24 8.31 -92.71 -0.77 15.47 16 40 H 0.11 3.89 8.14 -2.39 -0.02 3.87 16 41 H 0.08 3.61 8.14 -2.39 -0.02 3.59 16 42 H 0.08 3.50 7.68 -2.39 -0.02 3.48 16 43 H 0.11 3.72 8.14 -2.39 -0.02 3.70 16 44 H 0.42 8.15 9.10 -74.06 -0.67 7.48 16 Total: -1.00 -85.79 361.89 -0.40 -86.18 By element: Atomic # 1 Polarization: 28.43 SS G_CDS: 0.17 Total: 28.59 kcal Atomic # 6 Polarization: -53.62 SS G_CDS: 3.95 Total: -49.67 kcal Atomic # 7 Polarization: -91.11 SS G_CDS: -1.18 Total: -92.29 kcal Atomic # 8 Polarization: -126.20 SS G_CDS: -4.78 Total: -130.98 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 1.73 Total: 47.01 kcal Atomic # 16 Polarization: 111.45 SS G_CDS: -0.29 Total: 111.16 kcal Total: -85.79 -0.40 -86.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574089555.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.694 kcal (2) G-P(sol) polarization free energy of solvation -85.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.12 seconds