Wall clock time and date at job start Tue Mar 31 2020 17:44:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.49416 * 2 1 4 4 C 1.53190 * 109.49376 * 239.90249 * 2 1 3 5 5 N 1.46928 * 108.77176 * 185.41140 * 4 2 1 6 6 S 1.65601 * 120.63037 * 233.59022 * 5 4 2 7 7 O 1.42099 * 104.27742 * 206.07458 * 6 5 4 8 8 O 1.42103 * 104.27513 * 333.92684 * 6 5 4 9 9 C 1.81391 * 104.45246 * 89.99925 * 6 5 4 10 10 C 1.52998 * 109.47380 * 173.99648 * 9 6 5 11 11 C 1.50700 * 115.55025 * 65.19819 * 10 9 6 12 12 H 1.07997 * 120.00427 * 264.78745 * 11 10 9 13 13 C 1.37877 * 119.99962 * 84.78807 * 11 10 9 14 14 N 1.31514 * 120.00076 * 352.22823 * 13 11 10 15 15 Si 1.86795 * 120.00242 * 172.22849 * 13 11 10 16 16 H 1.48506 * 109.47163 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.47465 * 119.99878 * 15 13 11 18 18 H 1.48505 * 109.47407 * 239.99897 * 15 13 11 19 19 C 1.53002 * 117.50011 * 279.53002 * 10 9 6 20 20 C 1.53001 * 117.49942 * 210.87191 * 10 9 6 21 21 C 1.46925 * 118.74157 * 53.61251 * 5 4 2 22 22 C 1.53197 * 108.77262 * 306.38950 * 21 5 4 23 23 C 1.53041 * 109.31150 * 54.63484 * 22 21 5 24 24 H 1.08997 * 109.46183 * 58.65521 * 23 22 21 25 25 C 1.50703 * 109.45016 * 178.62223 * 23 22 21 26 26 O 1.20818 * 120.00161 * 120.02947 * 25 23 22 27 27 O 1.34229 * 119.99747 * 300.03565 * 25 23 22 28 28 H 1.09006 * 109.47155 * 299.93305 * 1 2 3 29 29 H 1.08999 * 109.47574 * 59.93584 * 1 2 3 30 30 H 1.09004 * 109.47117 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.59196 * 305.19982 * 4 2 1 32 32 H 1.09006 * 109.58806 * 65.48491 * 4 2 1 33 33 H 1.08997 * 109.47312 * 293.99494 * 9 6 5 34 34 H 1.09004 * 109.47483 * 53.99396 * 9 6 5 35 35 H 0.96996 * 120.00767 * 185.01801 * 14 13 11 36 36 H 1.09008 * 117.49528 * 0.02562 * 19 10 9 37 37 H 1.09004 * 117.50207 * 145.01789 * 19 10 9 38 38 H 1.09001 * 117.49658 * 214.97633 * 20 10 9 39 39 H 1.08990 * 117.50008 * 359.97438 * 20 10 9 40 40 H 1.08993 * 109.58760 * 66.17133 * 21 5 4 41 41 H 1.08994 * 109.58731 * 186.60458 * 21 5 4 42 42 H 1.09004 * 109.49806 * 294.68304 * 22 21 5 43 43 H 1.08993 * 109.49756 * 174.58780 * 22 21 5 44 44 H 0.96699 * 117.00343 * 179.97438 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7242 -1.2494 5 7 3.5046 -0.8294 -1.1694 6 16 4.4586 -0.2857 -2.4089 7 8 5.6451 -1.0606 -2.3038 8 8 3.6256 -0.3737 -3.5568 9 6 4.7924 1.4488 -1.9961 10 6 5.7948 2.0274 -2.9966 11 6 5.3102 2.1239 -4.4203 12 1 5.5370 1.3353 -5.1225 13 6 4.5773 3.2188 -4.8264 14 7 4.1703 4.1026 -3.9415 15 14 4.1623 3.4470 -6.6333 16 1 4.7327 2.3227 -7.4180 17 1 2.6873 3.4717 -6.8032 18 1 4.7375 4.7285 -7.1153 19 6 7.2759 1.7143 -2.7742 20 6 6.7406 3.1213 -2.4966 21 6 4.1053 -1.4267 0.0311 22 6 3.5709 -0.6946 1.2661 23 6 2.0409 -0.7228 1.2485 24 1 1.6968 -1.7569 1.2358 25 6 1.5121 -0.0329 2.4796 26 8 0.8004 0.9373 2.3698 27 8 1.8318 -0.4962 3.6981 28 1 -0.3634 0.5128 0.8906 29 1 -0.3634 0.5148 -0.8894 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6052 -1.7220 -1.2976 32 1 1.7615 -0.1598 -2.1390 33 1 3.8641 2.0182 -2.0413 34 1 5.2071 1.5095 -0.9898 35 1 3.5940 4.8331 -4.2153 36 1 7.5360 1.0956 -1.9152 37 1 7.8998 1.5783 -3.6576 38 1 7.0127 3.9104 -3.1976 39 1 6.6484 3.4289 -1.4551 40 1 3.8376 -2.4817 0.0874 41 1 5.1896 -1.3245 -0.0135 42 1 3.9160 0.3393 1.2539 43 1 3.9335 -1.1890 2.1673 44 1 1.4692 -0.0204 4.4579 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000574163084.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:44:03 Heat of formation + Delta-G solvation = -168.392232 kcal Electronic energy + Delta-G solvation = -28276.280701 eV Core-core repulsion = 24320.299089 eV Total energy + Delta-G solvation = -3955.981612 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.66162 -39.30372 -38.57412 -38.00956 -37.10845 -36.78194 -34.36836 -34.10011 -33.05218 -29.85294 -28.14480 -27.52923 -26.54274 -23.25456 -23.09355 -22.98483 -21.49765 -20.80615 -19.76346 -18.98047 -18.58560 -18.35293 -17.64581 -17.15335 -16.86983 -16.69107 -16.48100 -15.78002 -15.57286 -15.27819 -15.04809 -14.82355 -14.73553 -14.39716 -13.78133 -13.69927 -13.60855 -13.34517 -13.18587 -13.14351 -12.99415 -12.89704 -12.86833 -12.68653 -12.46661 -12.44686 -12.28208 -12.21211 -11.92978 -11.90824 -11.73417 -11.58504 -11.46655 -11.10958 -10.88535 -10.56650 -10.14653 -9.74179 -8.20717 -6.35527 -0.53427 1.24759 1.35682 1.39048 1.50249 1.91341 2.15279 2.38403 2.99808 3.06495 3.32202 3.39249 3.48677 3.66221 3.85399 3.95841 4.02919 4.12550 4.28948 4.34123 4.42115 4.50014 4.56293 4.59267 4.65392 4.70289 4.73886 4.83133 4.83932 4.90452 4.96557 5.06870 5.15373 5.19824 5.19966 5.33960 5.37568 5.46822 5.57430 5.69722 5.70958 5.77635 6.21310 6.71230 7.06573 7.37034 8.86457 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.015202 B = 0.004233 C = 0.003993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.439300 B = 6613.522294 C = 7010.566609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.091 4.091 3 H 0.062 0.938 4 C 0.124 3.876 5 N -1.004 6.004 6 S 2.622 3.378 7 O -0.985 6.985 8 O -0.990 6.990 9 C -0.553 4.553 10 C 0.009 3.991 11 C -0.532 4.532 12 H 0.049 0.951 13 C 0.041 3.959 14 N -0.894 5.894 15 Si 0.936 3.064 16 H -0.271 1.271 17 H -0.276 1.276 18 H -0.272 1.272 19 C -0.193 4.193 20 C -0.141 4.141 21 C 0.114 3.886 22 C -0.124 4.124 23 C -0.070 4.070 24 H 0.139 0.861 25 C 0.489 3.511 26 O -0.542 6.542 27 O -0.508 6.508 28 H 0.072 0.928 29 H 0.053 0.947 30 H 0.074 0.926 31 H 0.099 0.901 32 H 0.076 0.924 33 H 0.115 0.885 34 H 0.128 0.872 35 H 0.265 0.735 36 H 0.101 0.899 37 H 0.083 0.917 38 H 0.065 0.935 39 H 0.086 0.914 40 H 0.101 0.899 41 H 0.095 0.905 42 H 0.064 0.936 43 H 0.118 0.882 44 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.081 -11.007 16.591 20.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.111 4.111 3 H 0.081 0.919 4 C -0.001 4.001 5 N -0.842 5.842 6 S 2.720 3.280 7 O -0.976 6.976 8 O -0.980 6.980 9 C -0.685 4.685 10 C 0.006 3.994 11 C -0.569 4.569 12 H 0.067 0.933 13 C -0.161 4.161 14 N -0.531 5.531 15 Si 0.761 3.239 16 H -0.195 1.195 17 H -0.202 1.202 18 H -0.197 1.197 19 C -0.230 4.230 20 C -0.180 4.180 21 C -0.011 4.011 22 C -0.163 4.163 23 C -0.089 4.089 24 H 0.157 0.843 25 C 0.332 3.668 26 O -0.433 6.433 27 O -0.322 6.322 28 H 0.091 0.909 29 H 0.072 0.928 30 H 0.093 0.907 31 H 0.117 0.883 32 H 0.095 0.905 33 H 0.133 0.867 34 H 0.146 0.854 35 H 0.074 0.926 36 H 0.119 0.881 37 H 0.101 0.899 38 H 0.083 0.917 39 H 0.104 0.896 40 H 0.119 0.881 41 H 0.113 0.887 42 H 0.083 0.917 43 H 0.136 0.864 44 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges -4.882 -11.313 15.494 19.796 hybrid contribution -0.717 1.700 -0.317 1.872 sum -5.600 -9.614 15.176 18.818 Atomic orbital electron populations 1.22039 0.93217 1.03132 1.03228 1.21365 0.97255 0.99370 0.93111 0.91908 1.21597 0.78178 1.02510 0.97842 1.57853 1.16063 1.75496 1.34832 1.04497 0.73063 0.77159 0.73296 1.93453 1.49307 1.68275 1.86537 1.93473 1.68097 1.87160 1.49245 1.29939 1.09185 1.22295 1.07092 1.18443 0.86500 1.01482 0.92933 1.20730 1.36258 1.05661 0.94292 0.93270 1.25537 0.94804 0.94905 1.00876 1.70037 1.33328 1.14792 1.34896 0.85839 0.78315 0.78272 0.81466 1.19518 1.20192 1.19711 1.23241 0.97671 0.99400 1.02675 1.22494 1.04665 0.91212 0.99620 1.21706 0.98650 0.98679 0.82023 1.21985 0.91967 1.02438 0.99892 1.21087 0.97605 1.02201 0.87993 0.84288 1.23596 0.76351 0.81371 0.85435 1.90677 1.37030 1.28095 1.87486 1.84490 1.71262 1.59607 1.16809 0.90929 0.92751 0.90693 0.88251 0.90509 0.86673 0.85421 0.92613 0.88081 0.89880 0.91677 0.89602 0.88077 0.88666 0.91698 0.86377 0.71272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.29 8.86 71.98 0.64 -2.65 16 2 C -0.09 -2.02 2.06 -10.71 -0.02 -2.04 16 3 H 0.06 1.71 8.13 -2.39 -0.02 1.69 16 4 C 0.12 3.10 5.59 86.36 0.48 3.58 16 5 N -1.00 -27.86 3.22 -513.07 -1.65 -29.51 16 6 S 2.62 103.55 5.15 -56.49 -0.29 103.26 16 7 O -0.99 -40.89 16.72 -127.65 -2.13 -43.02 16 8 O -0.99 -47.28 16.39 -127.65 -2.09 -49.37 16 9 C -0.55 -22.99 6.03 71.98 0.43 -22.55 16 10 C 0.01 0.42 1.32 -52.93 -0.07 0.35 16 11 C -0.53 -29.73 8.17 25.60 0.21 -29.52 16 12 H 0.05 2.85 7.83 -2.91 -0.02 2.83 16 13 C 0.04 2.30 5.38 84.65 0.46 2.76 16 14 N -0.89 -50.17 12.98 21.45 0.28 -49.89 16 15 Si 0.94 44.48 29.55 68.60 2.03 46.51 16 16 H -0.27 -12.86 7.11 99.48 0.71 -12.16 16 17 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 18 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 19 C -0.19 -8.23 9.96 30.62 0.30 -7.92 16 20 C -0.14 -6.37 9.49 30.62 0.29 -6.08 16 21 C 0.11 2.22 6.31 86.36 0.55 2.77 16 22 C -0.12 -1.94 5.30 30.67 0.16 -1.78 16 23 C -0.07 -1.15 2.14 -11.51 -0.02 -1.17 16 24 H 0.14 1.53 8.14 -2.39 -0.02 1.51 16 25 C 0.49 8.76 7.33 71.24 0.52 9.28 16 26 O -0.54 -13.66 14.33 21.99 0.32 -13.34 16 27 O -0.51 -5.91 13.30 -51.41 -0.68 -6.60 16 28 H 0.07 1.69 5.41 -2.38 -0.01 1.68 16 29 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 31 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.08 2.31 7.11 -2.38 -0.02 2.29 16 33 H 0.11 5.19 8.14 -2.39 -0.02 5.17 16 34 H 0.13 4.31 8.09 -2.39 -0.02 4.29 16 35 H 0.26 14.11 8.32 -92.71 -0.77 13.34 16 36 H 0.10 3.74 8.14 -2.38 -0.02 3.72 16 37 H 0.08 3.56 8.14 -2.39 -0.02 3.54 16 38 H 0.06 3.17 8.14 -2.39 -0.02 3.15 16 39 H 0.09 3.47 8.14 -2.39 -0.02 3.45 16 40 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.10 1.94 7.10 -2.39 -0.02 1.92 16 42 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 43 H 0.12 1.21 8.08 -2.39 -0.02 1.19 16 44 H 0.43 1.79 9.10 -74.06 -0.67 1.11 16 Total: -1.00 -75.17 369.64 0.03 -75.14 By element: Atomic # 1 Polarization: 21.46 SS G_CDS: 0.33 Total: 21.79 kcal Atomic # 6 Polarization: -58.90 SS G_CDS: 3.93 Total: -54.97 kcal Atomic # 7 Polarization: -78.03 SS G_CDS: -1.37 Total: -79.40 kcal Atomic # 8 Polarization: -107.74 SS G_CDS: -4.60 Total: -112.33 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Atomic # 16 Polarization: 103.55 SS G_CDS: -0.29 Total: 103.26 kcal Total: -75.17 0.03 -75.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574163084.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.253 kcal (2) G-P(sol) polarization free energy of solvation -75.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds