Wall clock time and date at job start Tue Mar 31 2020 16:51:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47001 * 2 1 4 4 H 1.09007 * 109.99330 * 186.90708 * 3 2 1 5 5 C 1.54314 * 109.99072 * 65.87366 * 3 2 1 6 6 H 1.09003 * 110.92065 * 144.62930 * 5 3 2 7 7 C 1.50699 * 110.74000 * 21.38077 * 5 3 2 8 8 O 1.20827 * 119.99571 * 241.86556 * 7 5 3 9 9 O 1.34227 * 120.00584 * 61.87062 * 7 5 3 10 10 C 1.55153 * 102.86240 * 263.04896 * 5 3 2 11 11 C 1.54913 * 101.58046 * 324.30251 * 10 5 3 12 12 N 1.47023 * 109.88104 * 307.99658 * 3 2 1 13 13 S 1.65611 * 125.64648 * 300.51845 * 12 3 2 14 14 O 1.42097 * 104.27523 * 159.12368 * 13 12 3 15 15 O 1.42101 * 104.27612 * 31.26785 * 13 12 3 16 16 C 1.81401 * 104.44679 * 275.19369 * 13 12 3 17 17 C 1.52998 * 109.46938 * 172.90345 * 16 13 12 18 18 C 1.50702 * 115.54974 * 59.21682 * 17 16 13 19 19 H 1.07997 * 120.00350 * 265.23650 * 18 17 16 20 20 C 1.37882 * 119.99647 * 85.24021 * 18 17 16 21 21 N 1.31505 * 120.00170 * 353.69656 * 20 18 17 22 22 Si 1.86797 * 119.99769 * 173.69699 * 20 18 17 23 23 H 1.48507 * 109.47274 * 89.99798 * 22 20 18 24 24 H 1.48499 * 109.47427 * 209.99872 * 22 20 18 25 25 H 1.48498 * 109.47295 * 330.00041 * 22 20 18 26 26 C 1.53001 * 117.50038 * 273.55046 * 17 16 13 27 27 C 1.53004 * 117.50129 * 204.88901 * 17 16 13 28 28 H 1.09002 * 109.47366 * 173.55603 * 1 2 3 29 29 H 1.09001 * 109.47321 * 293.55613 * 1 2 3 30 30 H 1.09001 * 109.47343 * 53.55636 * 1 2 3 31 31 H 1.08996 * 109.47639 * 239.99283 * 2 1 3 32 32 H 1.09005 * 109.47097 * 119.99227 * 2 1 3 33 33 H 0.96698 * 117.00767 * 180.02562 * 9 7 5 34 34 H 1.08996 * 111.00319 * 206.22611 * 10 5 3 35 35 H 1.08996 * 111.03983 * 82.39307 * 10 5 3 36 36 H 1.09003 * 110.36636 * 278.17059 * 11 10 5 37 37 H 1.09003 * 110.36477 * 155.85090 * 11 10 5 38 38 H 1.08997 * 109.46890 * 52.90707 * 16 13 12 39 39 H 1.08991 * 109.47176 * 292.90431 * 16 13 12 40 40 H 0.97002 * 120.00117 * 185.03617 * 21 20 18 41 41 H 1.09002 * 117.49893 * 359.97438 * 26 17 16 42 42 H 1.08997 * 117.50371 * 145.01647 * 26 17 16 43 43 H 1.08996 * 117.49862 * 214.97934 * 27 17 16 44 44 H 1.09001 * 117.49261 * 359.97438 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1229 1.4550 -0.1232 5 6 1.6569 2.1375 1.3235 6 1 2.4369 2.8304 1.6392 7 6 1.3826 1.1199 2.4007 8 8 0.2866 1.0548 2.9051 9 8 2.3557 0.2860 2.7998 10 6 0.3607 2.9034 0.9489 11 6 0.6629 3.3319 -0.5088 12 7 1.4041 2.1976 -1.0896 13 16 1.4990 1.8305 -2.7017 14 8 0.3803 2.4907 -3.2778 15 8 1.6096 0.4142 -2.7326 16 6 3.0460 2.6021 -3.2512 17 6 3.3396 2.1850 -4.6937 18 6 2.2830 2.5508 -5.7040 19 1 1.5216 1.8336 -5.9729 20 6 2.2883 3.8012 -6.2851 21 7 3.1369 4.7158 -5.8694 22 14 1.0903 4.1959 -7.6628 23 1 -0.1646 4.7421 -7.0863 24 1 1.6957 5.2014 -8.5725 25 1 0.7870 2.9580 -8.4249 26 6 4.0997 0.8747 -4.9094 27 6 4.7983 2.2146 -5.1547 28 1 -0.3634 -1.0212 -0.1153 29 1 -0.3634 0.4107 0.9420 30 1 -0.3634 0.6105 -0.8267 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5137 0.8901 33 1 2.1321 -0.3498 3.4933 34 1 0.2215 3.7732 1.5909 35 1 -0.5080 2.2465 0.9909 36 1 1.2773 4.2322 -0.5200 37 1 -0.2654 3.4982 -1.0555 38 1 3.8626 2.2784 -2.6060 39 1 2.9497 3.6865 -3.1991 40 1 3.0924 5.6167 -6.2264 41 1 4.3910 0.3102 -4.0236 42 1 3.8358 0.2776 -5.7821 43 1 4.9935 2.4983 -6.1888 44 1 5.5486 2.5317 -4.4304 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000579718141.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:51:13 Heat of formation + Delta-G solvation = -154.982375 kcal Electronic energy + Delta-G solvation = -28649.451568 eV Core-core repulsion = 24694.051451 eV Total energy + Delta-G solvation = -3955.400117 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 1.83 seconds Orbital eigenvalues (eV) -41.92875 -39.46988 -38.55208 -37.95489 -37.06193 -36.74040 -34.09728 -33.70339 -32.31575 -29.94296 -29.52038 -27.50509 -25.54340 -23.95696 -22.97854 -22.66620 -21.36889 -20.89842 -19.65721 -18.90979 -18.41878 -18.37318 -18.01659 -17.17539 -16.97548 -16.76081 -16.46852 -15.93795 -15.62306 -15.22702 -14.97745 -14.63266 -14.43932 -14.08869 -13.87059 -13.75486 -13.69062 -13.25542 -13.09864 -12.98311 -12.88275 -12.87721 -12.82768 -12.77863 -12.62843 -12.43413 -12.40183 -12.17496 -12.02151 -11.89387 -11.68842 -11.54588 -11.47109 -11.15535 -10.89540 -10.54326 -10.14454 -9.73917 -8.21330 -6.36599 -0.55525 1.23025 1.36549 1.39887 1.47382 1.88762 2.22076 2.38496 3.03688 3.05312 3.15629 3.38910 3.42465 3.60118 3.88731 4.00699 4.10617 4.18239 4.24456 4.27986 4.38270 4.51106 4.52307 4.54477 4.60351 4.65996 4.82811 4.84565 4.87515 4.96792 4.99003 5.02295 5.12567 5.21008 5.23101 5.29420 5.44886 5.48199 5.56168 5.60721 5.67645 5.69751 6.20995 6.69893 7.05210 7.36867 8.85690 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.021612 B = 0.004065 C = 0.003843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.266500 B = 6886.636621 C = 7284.685019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.168 4.168 3 C 0.158 3.842 4 H 0.109 0.891 5 C -0.087 4.087 6 H 0.158 0.842 7 C 0.505 3.495 8 O -0.539 6.539 9 O -0.507 6.507 10 C -0.110 4.110 11 C 0.106 3.894 12 N -1.013 6.013 13 S 2.637 3.363 14 O -0.991 6.991 15 O -0.978 6.978 16 C -0.551 4.551 17 C 0.008 3.992 18 C -0.539 4.539 19 H 0.045 0.955 20 C 0.046 3.954 21 N -0.890 5.890 22 Si 0.930 3.070 23 H -0.277 1.277 24 H -0.270 1.270 25 H -0.269 1.269 26 C -0.192 4.192 27 C -0.137 4.137 28 H 0.051 0.949 29 H 0.070 0.930 30 H 0.030 0.970 31 H 0.083 0.917 32 H 0.100 0.900 33 H 0.427 0.573 34 H 0.117 0.883 35 H 0.077 0.923 36 H 0.094 0.906 37 H 0.070 0.930 38 H 0.135 0.865 39 H 0.120 0.880 40 H 0.266 0.734 41 H 0.102 0.898 42 H 0.079 0.921 43 H 0.064 0.936 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.855 -3.731 19.091 19.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.207 4.207 3 C 0.052 3.948 4 H 0.127 0.873 5 C -0.108 4.108 6 H 0.176 0.824 7 C 0.349 3.651 8 O -0.429 6.429 9 O -0.321 6.321 10 C -0.149 4.149 11 C -0.018 4.018 12 N -0.851 5.851 13 S 2.737 3.263 14 O -0.982 6.982 15 O -0.968 6.968 16 C -0.684 4.684 17 C 0.006 3.994 18 C -0.576 4.576 19 H 0.063 0.937 20 C -0.157 4.157 21 N -0.526 5.526 22 Si 0.755 3.245 23 H -0.203 1.203 24 H -0.195 1.195 25 H -0.194 1.194 26 C -0.229 4.229 27 C -0.176 4.176 28 H 0.070 0.930 29 H 0.089 0.911 30 H 0.050 0.950 31 H 0.101 0.899 32 H 0.118 0.882 33 H 0.289 0.711 34 H 0.135 0.865 35 H 0.095 0.905 36 H 0.112 0.888 37 H 0.088 0.912 38 H 0.153 0.847 39 H 0.138 0.862 40 H 0.075 0.925 41 H 0.120 0.880 42 H 0.098 0.902 43 H 0.083 0.917 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 1.105 -3.819 18.271 18.699 hybrid contribution -0.462 0.324 -0.678 0.881 sum 0.643 -3.495 17.594 17.949 Atomic orbital electron populations 1.21940 0.96530 1.01274 1.01687 1.22473 0.96464 0.96673 1.05047 1.21391 0.98266 0.90473 0.84638 0.87298 1.22268 1.02391 0.95597 0.90505 0.82409 1.22930 0.81458 0.79736 0.81014 1.90719 1.25752 1.70085 1.56345 1.84535 1.43383 1.47166 1.57048 1.22880 0.96046 1.01358 0.94614 1.22270 0.96668 0.88946 0.93912 1.58730 1.64841 1.39699 1.21844 1.04051 0.76977 0.74105 0.71189 1.93467 1.50616 1.77584 1.76526 1.93441 1.88083 1.29696 1.85621 1.29897 1.20025 1.12840 1.05625 1.18405 0.93594 0.97709 0.89716 1.20696 1.12566 0.99834 1.24517 0.93670 1.25478 0.96180 0.96132 0.97917 1.70002 1.36149 1.02956 1.43505 0.85973 0.79777 0.78525 0.80185 1.20324 1.19524 1.19389 1.23217 1.06095 0.90741 1.02840 1.22490 0.95378 0.99186 1.00554 0.92998 0.91091 0.95046 0.89852 0.88234 0.71061 0.86461 0.90483 0.88785 0.91196 0.84684 0.86170 0.92463 0.87991 0.90240 0.91737 0.89237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.39 8.49 71.98 0.61 -3.77 16 2 C -0.17 -4.18 4.69 30.59 0.14 -4.04 16 3 C 0.16 3.47 3.48 45.34 0.16 3.62 16 4 H 0.11 1.89 8.14 -2.38 -0.02 1.87 16 5 C -0.09 -1.41 3.28 -10.36 -0.03 -1.45 16 6 H 0.16 1.47 8.14 -2.39 -0.02 1.45 16 7 C 0.51 8.58 5.23 71.24 0.37 8.95 16 8 O -0.54 -12.20 15.13 21.96 0.33 -11.87 16 9 O -0.51 -5.83 11.87 -51.38 -0.61 -6.44 16 10 C -0.11 -2.02 5.59 31.99 0.18 -1.85 16 11 C 0.11 2.53 7.03 86.86 0.61 3.14 16 12 N -1.01 -28.94 2.21 -484.28 -1.07 -30.01 16 13 S 2.64 105.44 5.00 -56.49 -0.28 105.16 16 14 O -0.99 -48.62 16.72 -127.65 -2.13 -50.75 16 15 O -0.98 -41.20 15.00 -127.65 -1.92 -43.12 16 16 C -0.55 -22.08 6.06 71.98 0.44 -21.64 16 17 C 0.01 0.38 1.41 -52.93 -0.07 0.30 16 18 C -0.54 -29.92 7.87 25.60 0.20 -29.72 16 19 H 0.05 2.63 7.82 -2.91 -0.02 2.60 16 20 C 0.05 2.55 5.39 84.66 0.46 3.00 16 21 N -0.89 -48.88 12.92 21.45 0.28 -48.60 16 22 Si 0.93 44.28 29.54 68.60 2.03 46.30 16 23 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 24 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 25 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 26 C -0.19 -8.03 9.95 30.62 0.30 -7.72 16 27 C -0.14 -6.02 9.45 30.62 0.29 -5.73 16 28 H 0.05 1.40 8.14 -2.39 -0.02 1.39 16 29 H 0.07 1.83 3.86 -2.39 -0.01 1.82 16 30 H 0.03 1.01 6.97 -2.39 -0.02 1.00 16 31 H 0.08 2.49 5.99 -2.39 -0.01 2.48 16 32 H 0.10 1.95 5.56 -2.38 -0.01 1.94 16 33 H 0.43 1.54 9.10 -74.06 -0.67 0.87 16 34 H 0.12 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.08 1.71 5.51 -2.39 -0.01 1.70 16 36 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.07 1.93 7.65 -2.39 -0.02 1.92 16 38 H 0.13 4.21 8.11 -2.39 -0.02 4.19 16 39 H 0.12 5.09 8.14 -2.39 -0.02 5.07 16 40 H 0.27 13.87 8.32 -92.71 -0.77 13.10 16 41 H 0.10 3.64 8.14 -2.39 -0.02 3.62 16 42 H 0.08 3.38 8.14 -2.39 -0.02 3.36 16 43 H 0.06 3.08 8.14 -2.39 -0.02 3.06 16 44 H 0.09 3.46 8.14 -2.39 -0.02 3.44 16 Total: -1.00 -74.74 357.93 0.63 -74.10 By element: Atomic # 1 Polarization: 21.76 SS G_CDS: 0.35 Total: 22.12 kcal Atomic # 6 Polarization: -60.54 SS G_CDS: 3.65 Total: -56.89 kcal Atomic # 7 Polarization: -77.82 SS G_CDS: -0.79 Total: -78.61 kcal Atomic # 8 Polarization: -107.85 SS G_CDS: -4.33 Total: -112.18 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.30 kcal Atomic # 16 Polarization: 105.44 SS G_CDS: -0.28 Total: 105.16 kcal Total: -74.74 0.63 -74.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579718141.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.879 kcal (2) G-P(sol) polarization free energy of solvation -74.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.83 seconds