Wall clock time and date at job start Tue Mar 31 2020 16:51:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47603 * 2 1 4 4 H 1.09005 * 109.87270 * 304.48795 * 3 2 1 5 5 C 1.54325 * 110.01185 * 65.58283 * 3 2 1 6 6 H 1.09000 * 110.72039 * 23.31665 * 5 3 2 7 7 C 1.50710 * 110.71933 * 260.22783 * 5 3 2 8 8 O 1.20821 * 119.99909 * 359.97438 * 7 5 3 9 9 O 1.34225 * 119.99693 * 180.02562 * 7 5 3 10 10 C 1.55150 * 102.94463 * 141.68907 * 5 3 2 11 11 C 1.55130 * 101.48332 * 324.33202 * 10 5 3 12 12 N 1.47015 * 109.88825 * 183.47057 * 3 2 1 13 13 S 1.65599 * 125.64827 * 61.44711 * 12 3 2 14 14 O 1.42101 * 104.27793 * 340.03205 * 13 12 3 15 15 O 1.42104 * 104.27644 * 212.17627 * 13 12 3 16 16 C 1.81395 * 104.45083 * 96.10446 * 13 12 3 17 17 C 1.52998 * 109.47332 * 174.42670 * 16 13 12 18 18 C 1.50697 * 115.55201 * 40.20396 * 17 16 13 19 19 H 1.08005 * 120.00029 * 264.76491 * 18 17 16 20 20 C 1.37878 * 120.00232 * 84.76115 * 18 17 16 21 21 N 1.31515 * 119.99742 * 4.90476 * 20 18 17 22 22 Si 1.86797 * 120.00154 * 184.90182 * 20 18 17 23 23 H 1.48496 * 109.47130 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47318 * 120.00451 * 22 20 18 25 25 H 1.48506 * 109.46887 * 240.00260 * 22 20 18 26 26 C 1.53008 * 117.49826 * 254.49818 * 17 16 13 27 27 C 1.52997 * 60.00154 * 252.50834 * 26 17 16 28 28 H 1.08997 * 109.46902 * 304.60631 * 1 2 3 29 29 H 1.09001 * 109.47138 * 64.60156 * 1 2 3 30 30 H 1.08997 * 109.47338 * 184.60839 * 1 2 3 31 31 H 1.08997 * 109.47131 * 239.99699 * 2 1 3 32 32 H 1.09003 * 109.47090 * 120.00033 * 2 1 3 33 33 H 0.96699 * 116.99697 * 180.02562 * 9 7 5 34 34 H 1.08998 * 111.01189 * 82.56973 * 10 5 3 35 35 H 1.09004 * 111.00752 * 206.42401 * 10 5 3 36 36 H 1.09001 * 110.49935 * 278.45319 * 11 10 5 37 37 H 1.09002 * 110.34685 * 156.05904 * 11 10 5 38 38 H 1.09005 * 109.46893 * 294.42163 * 16 13 12 39 39 H 1.08995 * 109.47496 * 54.42185 * 16 13 12 40 40 H 0.96999 * 120.00334 * 184.99870 * 21 20 18 41 41 H 1.09000 * 117.49589 * 359.97438 * 26 17 16 42 42 H 1.08997 * 117.49750 * 145.01504 * 26 17 16 43 43 H 1.08996 * 117.49757 * 252.51297 * 27 26 17 44 44 H 1.08997 * 117.51869 * 107.47635 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6164 1.9853 -0.8450 5 6 1.6511 2.1402 1.3204 6 1 1.4821 1.4068 2.1089 7 6 0.4310 3.0037 1.1278 8 8 -0.0962 3.0711 0.0427 9 8 -0.0693 3.6986 2.1614 10 6 2.8981 3.0078 1.6355 11 6 4.0456 2.0942 1.1304 12 7 3.5078 1.4538 -0.0837 13 16 4.4082 0.8422 -1.3317 14 8 3.5288 -0.0601 -1.9889 15 8 5.6005 0.3816 -0.7108 16 6 4.7531 2.2769 -2.3867 17 6 5.7031 1.8651 -3.5131 18 6 5.4374 0.5143 -4.1262 19 1 5.9764 -0.3534 -3.7754 20 6 4.5063 0.3862 -5.1350 21 7 3.9202 1.4551 -5.6285 22 14 4.0773 -1.3056 -5.8007 23 1 4.8701 -2.3357 -5.0828 24 1 2.6291 -1.5647 -5.5981 25 1 4.3919 -1.3612 -7.2509 26 6 7.1602 2.3204 -3.4103 27 6 6.2267 2.9686 -4.4346 28 1 -0.3633 0.5836 0.8458 29 1 -0.3633 0.4408 -0.9283 30 1 -0.3634 -1.0243 0.0826 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 -0.8532 4.2380 1.9894 34 1 2.8703 3.9472 1.0834 35 1 2.9877 3.1887 2.7067 36 1 4.2918 1.3413 1.8792 37 1 4.9253 2.6902 0.8870 38 1 3.8209 2.6459 -2.8144 39 1 5.2158 3.0634 -1.7906 40 1 3.2136 1.3607 -6.2863 41 1 7.4419 2.9138 -2.5404 42 1 7.9269 1.6429 -3.7860 43 1 6.3793 2.7174 -5.4842 44 1 5.8939 3.9878 -4.2387 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000579718148.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:51:28 Heat of formation + Delta-G solvation = -139.641782 kcal Electronic energy + Delta-G solvation = -28545.967965 eV Core-core repulsion = 24591.233066 eV Total energy + Delta-G solvation = -3954.734899 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -40.82617 -38.48076 -36.71118 -36.28538 -36.19312 -34.98580 -33.15521 -32.03032 -31.40741 -28.20578 -28.16220 -25.49548 -24.64932 -22.39079 -21.91236 -21.16015 -20.26051 -19.49327 -18.57448 -18.01596 -17.43292 -16.75424 -16.35071 -15.66005 -15.50347 -15.05332 -14.60224 -14.49016 -14.38676 -13.96920 -13.80897 -13.53324 -13.12822 -13.04498 -12.82557 -12.40939 -12.21809 -11.92127 -11.79122 -11.72626 -11.65655 -11.33227 -11.19625 -11.12942 -10.99552 -10.98137 -10.89134 -10.83727 -10.58576 -10.47523 -10.39887 -10.16360 -10.02421 -9.62836 -9.08232 -8.74998 -8.47450 -8.06443 -6.14017 -4.29634 1.05733 2.01402 2.76589 3.34529 3.44182 3.44342 3.49796 4.17398 4.27285 4.43513 4.62996 4.80528 4.91972 5.00865 5.11274 5.16306 5.18650 5.24792 5.31877 5.40851 5.50324 5.53638 5.60089 5.70163 5.77025 5.87421 5.93527 6.00366 6.15108 6.21727 6.27243 6.32085 6.37260 6.51413 6.62587 6.67331 6.70664 6.73301 6.98649 7.19987 7.47111 7.69514 7.79697 8.19414 8.79906 9.48245 10.93436 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.014676 B = 0.004838 C = 0.004350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1907.424187 B = 5785.799234 C = 6435.094489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.159 4.159 3 C 0.167 3.833 4 H 0.095 0.905 5 C -0.091 4.091 6 H 0.122 0.878 7 C 0.487 3.513 8 O -0.501 6.501 9 O -0.517 6.517 10 C -0.118 4.118 11 C 0.121 3.879 12 N -1.023 6.023 13 S 2.636 3.364 14 O -0.933 6.933 15 O -0.967 6.967 16 C -0.560 4.560 17 C 0.044 3.956 18 C -0.539 4.539 19 H 0.069 0.931 20 C 0.097 3.903 21 N -0.867 5.867 22 Si 0.892 3.108 23 H -0.267 1.267 24 H -0.276 1.276 25 H -0.285 1.285 26 C -0.205 4.205 27 C -0.137 4.137 28 H 0.040 0.960 29 H 0.062 0.938 30 H 0.055 0.945 31 H 0.111 0.889 32 H 0.063 0.937 33 H 0.409 0.591 34 H 0.081 0.919 35 H 0.094 0.906 36 H 0.074 0.926 37 H 0.079 0.921 38 H 0.125 0.875 39 H 0.095 0.905 40 H 0.264 0.736 41 H 0.068 0.932 42 H 0.085 0.915 43 H 0.089 0.911 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.227 5.408 16.254 18.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.198 4.198 3 C 0.060 3.940 4 H 0.113 0.887 5 C -0.112 4.112 6 H 0.140 0.860 7 C 0.328 3.672 8 O -0.387 6.387 9 O -0.329 6.329 10 C -0.157 4.157 11 C -0.005 4.005 12 N -0.858 5.858 13 S 2.735 3.265 14 O -0.923 6.923 15 O -0.958 6.958 16 C -0.692 4.692 17 C 0.042 3.958 18 C -0.576 4.576 19 H 0.087 0.913 20 C -0.110 4.110 21 N -0.501 5.501 22 Si 0.719 3.281 23 H -0.192 1.192 24 H -0.201 1.201 25 H -0.211 1.211 26 C -0.243 4.243 27 C -0.176 4.176 28 H 0.059 0.941 29 H 0.081 0.919 30 H 0.074 0.926 31 H 0.129 0.871 32 H 0.082 0.918 33 H 0.268 0.732 34 H 0.100 0.900 35 H 0.112 0.888 36 H 0.092 0.908 37 H 0.097 0.903 38 H 0.143 0.857 39 H 0.114 0.886 40 H 0.074 0.926 41 H 0.086 0.914 42 H 0.103 0.897 43 H 0.107 0.893 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.816 4.306 15.707 17.294 hybrid contribution -1.036 0.441 -0.610 1.281 sum -6.852 4.747 15.097 17.245 Atomic orbital electron populations 1.21691 0.95319 1.01255 1.01781 1.22356 0.96309 0.95877 1.05236 1.21177 0.79987 0.96702 0.96124 0.88741 1.22145 0.90819 0.97124 1.01074 0.85980 1.23115 0.84710 0.77762 0.81564 1.90768 1.59500 1.61755 1.26689 1.84523 1.47745 1.58630 1.41959 1.22857 0.92042 0.98156 1.02662 1.21955 0.96044 0.95124 0.87359 1.59386 1.14966 1.77522 1.33904 1.04454 0.73002 0.76737 0.72325 1.93470 1.64746 1.59676 1.74429 1.93482 1.48004 1.78980 1.75309 1.30016 1.09966 1.17454 1.11768 1.18227 0.88090 0.95877 0.93634 1.20629 1.24892 0.91344 1.20752 0.91269 1.24898 0.94899 0.96880 0.94370 1.70009 1.23461 1.28429 1.28245 0.86510 0.79202 0.84455 0.77919 1.19161 1.20131 1.21121 1.23128 0.95201 1.04671 1.01261 1.22499 1.02890 0.95630 0.96541 0.94069 0.91898 0.92563 0.87065 0.91811 0.73189 0.90008 0.88783 0.90808 0.90311 0.85692 0.88597 0.92633 0.91383 0.89696 0.89252 0.91805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 9.14 37.16 0.34 -1.53 16 2 C -0.16 -2.38 5.37 -26.73 -0.14 -2.52 16 3 C 0.17 2.44 2.50 -66.96 -0.17 2.28 16 4 H 0.09 1.55 6.81 -51.93 -0.35 1.20 16 5 C -0.09 -0.98 2.32 -89.94 -0.21 -1.18 16 6 H 0.12 1.07 7.80 -51.93 -0.41 0.66 16 7 C 0.49 5.34 6.50 36.01 0.23 5.57 16 8 O -0.50 -7.17 15.51 -18.75 -0.29 -7.46 16 9 O -0.52 -4.01 13.42 -39.25 -0.53 -4.53 16 10 C -0.12 -1.08 6.54 -24.47 -0.16 -1.24 16 11 C 0.12 1.42 6.97 -2.41 -0.02 1.41 16 12 N -1.02 -16.20 3.32 -104.29 -0.35 -16.54 16 13 S 2.64 55.46 4.81 -107.50 -0.52 54.94 16 14 O -0.93 -22.41 14.07 -57.54 -0.81 -23.22 16 15 O -0.97 -22.12 17.70 -57.54 -1.02 -23.14 16 16 C -0.56 -11.92 6.28 37.16 0.23 -11.69 16 17 C 0.04 1.08 1.73 -155.66 -0.27 0.81 16 18 C -0.54 -14.89 6.88 -34.44 -0.24 -15.13 16 19 H 0.07 1.96 7.82 -52.48 -0.41 1.55 16 20 C 0.10 2.69 5.43 -17.82 -0.10 2.59 16 21 N -0.87 -24.37 12.66 55.43 0.70 -23.67 16 22 Si 0.89 22.31 29.54 -169.99 -5.02 17.28 16 23 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 24 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 25 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 26 C -0.21 -4.51 9.88 -26.73 -0.26 -4.78 16 27 C -0.14 -3.17 9.18 -26.73 -0.25 -3.42 16 28 H 0.04 0.47 6.36 -51.93 -0.33 0.14 16 29 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.11 2.03 5.50 -51.93 -0.29 1.75 16 32 H 0.06 0.84 8.07 -51.93 -0.42 0.42 16 33 H 0.41 1.57 9.10 45.56 0.41 1.98 16 34 H 0.08 0.74 8.04 -51.93 -0.42 0.33 16 35 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.12 2.73 8.14 -51.92 -0.42 2.30 16 39 H 0.10 1.70 7.95 -51.93 -0.41 1.28 16 40 H 0.26 7.08 8.32 -40.82 -0.34 6.74 16 41 H 0.07 1.31 8.09 -51.93 -0.42 0.89 16 42 H 0.08 1.85 8.14 -51.93 -0.42 1.42 16 43 H 0.09 2.21 8.14 -51.93 -0.42 1.79 16 44 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 LS Contribution 368.21 15.07 5.55 5.55 Total: -1.00 -34.50 368.21 -9.26 -43.76 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -5.98 Total: 5.85 kcal Atomic # 6 Polarization: -27.82 SS G_CDS: -1.00 Total: -28.82 kcal Atomic # 7 Polarization: -40.57 SS G_CDS: 0.36 Total: -40.21 kcal Atomic # 8 Polarization: -55.71 SS G_CDS: -2.65 Total: -58.35 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.28 kcal Atomic # 16 Polarization: 55.46 SS G_CDS: -0.52 Total: 54.94 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -34.50 -9.26 -43.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579718148.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.884 kcal (2) G-P(sol) polarization free energy of solvation -34.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds