Wall clock time and date at job start Tue Mar 31 2020 16:51:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47603 * 2 1 4 4 H 1.09005 * 109.87270 * 304.48795 * 3 2 1 5 5 C 1.54325 * 110.01185 * 65.58283 * 3 2 1 6 6 H 1.09000 * 110.72039 * 23.31665 * 5 3 2 7 7 C 1.50710 * 110.71933 * 260.22783 * 5 3 2 8 8 O 1.20821 * 119.99909 * 359.97438 * 7 5 3 9 9 O 1.34225 * 119.99693 * 180.02562 * 7 5 3 10 10 C 1.55150 * 102.94463 * 141.68907 * 5 3 2 11 11 C 1.55130 * 101.48332 * 324.33202 * 10 5 3 12 12 N 1.47015 * 109.88825 * 183.47057 * 3 2 1 13 13 S 1.65599 * 125.64827 * 61.44711 * 12 3 2 14 14 O 1.42101 * 104.27793 * 340.03205 * 13 12 3 15 15 O 1.42104 * 104.27644 * 212.17627 * 13 12 3 16 16 C 1.81395 * 104.45083 * 96.10446 * 13 12 3 17 17 C 1.52998 * 109.47332 * 174.42670 * 16 13 12 18 18 C 1.50697 * 115.55201 * 40.20396 * 17 16 13 19 19 H 1.08005 * 120.00029 * 264.76491 * 18 17 16 20 20 C 1.37878 * 120.00232 * 84.76115 * 18 17 16 21 21 N 1.31515 * 119.99742 * 4.90476 * 20 18 17 22 22 Si 1.86797 * 120.00154 * 184.90182 * 20 18 17 23 23 H 1.48496 * 109.47130 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47318 * 120.00451 * 22 20 18 25 25 H 1.48506 * 109.46887 * 240.00260 * 22 20 18 26 26 C 1.53008 * 117.49826 * 254.49818 * 17 16 13 27 27 C 1.52997 * 60.00154 * 252.50834 * 26 17 16 28 28 H 1.08997 * 109.46902 * 304.60631 * 1 2 3 29 29 H 1.09001 * 109.47138 * 64.60156 * 1 2 3 30 30 H 1.08997 * 109.47338 * 184.60839 * 1 2 3 31 31 H 1.08997 * 109.47131 * 239.99699 * 2 1 3 32 32 H 1.09003 * 109.47090 * 120.00033 * 2 1 3 33 33 H 0.96699 * 116.99697 * 180.02562 * 9 7 5 34 34 H 1.08998 * 111.01189 * 82.56973 * 10 5 3 35 35 H 1.09004 * 111.00752 * 206.42401 * 10 5 3 36 36 H 1.09001 * 110.49935 * 278.45319 * 11 10 5 37 37 H 1.09002 * 110.34685 * 156.05904 * 11 10 5 38 38 H 1.09005 * 109.46893 * 294.42163 * 16 13 12 39 39 H 1.08995 * 109.47496 * 54.42185 * 16 13 12 40 40 H 0.96999 * 120.00334 * 184.99870 * 21 20 18 41 41 H 1.09000 * 117.49589 * 359.97438 * 26 17 16 42 42 H 1.08997 * 117.49750 * 145.01504 * 26 17 16 43 43 H 1.08996 * 117.49757 * 252.51297 * 27 26 17 44 44 H 1.08997 * 117.51869 * 107.47635 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6164 1.9853 -0.8450 5 6 1.6511 2.1402 1.3204 6 1 1.4821 1.4068 2.1089 7 6 0.4310 3.0037 1.1278 8 8 -0.0962 3.0711 0.0427 9 8 -0.0693 3.6986 2.1614 10 6 2.8981 3.0078 1.6355 11 6 4.0456 2.0942 1.1304 12 7 3.5078 1.4538 -0.0837 13 16 4.4082 0.8422 -1.3317 14 8 3.5288 -0.0601 -1.9889 15 8 5.6005 0.3816 -0.7108 16 6 4.7531 2.2769 -2.3867 17 6 5.7031 1.8651 -3.5131 18 6 5.4374 0.5143 -4.1262 19 1 5.9764 -0.3534 -3.7754 20 6 4.5063 0.3862 -5.1350 21 7 3.9202 1.4551 -5.6285 22 14 4.0773 -1.3056 -5.8007 23 1 4.8701 -2.3357 -5.0828 24 1 2.6291 -1.5647 -5.5981 25 1 4.3919 -1.3612 -7.2509 26 6 7.1602 2.3204 -3.4103 27 6 6.2267 2.9686 -4.4346 28 1 -0.3633 0.5836 0.8458 29 1 -0.3633 0.4408 -0.9283 30 1 -0.3634 -1.0243 0.0826 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 -0.8532 4.2380 1.9894 34 1 2.8703 3.9472 1.0834 35 1 2.9877 3.1887 2.7067 36 1 4.2918 1.3413 1.8792 37 1 4.9253 2.6902 0.8870 38 1 3.8209 2.6459 -2.8144 39 1 5.2158 3.0634 -1.7906 40 1 3.2136 1.3607 -6.2863 41 1 7.4419 2.9138 -2.5404 42 1 7.9269 1.6429 -3.7860 43 1 6.3793 2.7174 -5.4842 44 1 5.8939 3.9878 -4.2387 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000579718148.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:51:25 Heat of formation + Delta-G solvation = -164.435292 kcal Electronic energy + Delta-G solvation = -28547.043093 eV Core-core repulsion = 24591.233066 eV Total energy + Delta-G solvation = -3955.810026 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 2.27 seconds Orbital eigenvalues (eV) -41.69700 -39.44302 -38.55719 -37.93204 -37.04811 -36.71618 -34.24037 -34.12573 -32.42813 -29.92825 -29.12746 -27.55681 -25.69315 -23.31830 -22.98478 -22.89278 -21.46412 -21.14005 -19.84485 -19.10090 -18.57559 -18.38120 -17.69662 -16.94902 -16.84109 -16.61784 -16.41783 -15.80158 -15.53959 -15.43473 -15.17748 -14.80421 -14.59559 -14.07847 -13.96232 -13.87284 -13.75224 -13.34118 -13.05788 -13.02478 -12.91212 -12.86432 -12.80051 -12.66406 -12.50653 -12.46073 -12.36564 -12.13163 -12.06782 -11.93176 -11.80096 -11.53666 -11.47240 -11.33190 -11.03466 -10.48857 -10.12932 -9.77838 -8.26523 -6.44260 -0.54371 1.20127 1.31279 1.38417 1.46201 1.87823 2.18249 2.37119 3.03892 3.06051 3.18748 3.25888 3.37757 3.63901 3.85428 3.99555 4.11383 4.18814 4.24666 4.26137 4.39924 4.49876 4.55165 4.55987 4.57713 4.61282 4.74453 4.82345 4.93411 4.96340 4.96998 5.07168 5.09407 5.16019 5.18785 5.36765 5.37727 5.43813 5.54223 5.62231 5.64764 5.65159 6.17102 6.66284 7.01866 7.34138 8.80775 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.014676 B = 0.004838 C = 0.004350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1907.424187 B = 5785.799234 C = 6435.094489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.163 4.163 3 C 0.160 3.840 4 H 0.068 0.932 5 C -0.087 4.087 6 H 0.151 0.849 7 C 0.496 3.504 8 O -0.542 6.542 9 O -0.502 6.502 10 C -0.105 4.105 11 C 0.104 3.896 12 N -1.020 6.020 13 S 2.647 3.353 14 O -0.975 6.975 15 O -0.990 6.990 16 C -0.558 4.558 17 C 0.006 3.994 18 C -0.549 4.549 19 H 0.050 0.950 20 C 0.059 3.941 21 N -0.887 5.887 22 Si 0.925 3.075 23 H -0.271 1.271 24 H -0.279 1.279 25 H -0.269 1.269 26 C -0.187 4.187 27 C -0.136 4.136 28 H 0.062 0.938 29 H 0.039 0.961 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.083 0.917 33 H 0.429 0.571 34 H 0.082 0.918 35 H 0.135 0.865 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.112 0.888 39 H 0.134 0.866 40 H 0.265 0.735 41 H 0.103 0.897 42 H 0.081 0.919 43 H 0.065 0.935 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.368 6.811 19.332 21.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.202 4.202 3 C 0.053 3.947 4 H 0.086 0.914 5 C -0.107 4.107 6 H 0.168 0.832 7 C 0.338 3.662 8 O -0.432 6.432 9 O -0.315 6.315 10 C -0.143 4.143 11 C -0.020 4.020 12 N -0.857 5.857 13 S 2.746 3.254 14 O -0.965 6.965 15 O -0.981 6.981 16 C -0.690 4.690 17 C 0.004 3.996 18 C -0.587 4.587 19 H 0.068 0.932 20 C -0.145 4.145 21 N -0.523 5.523 22 Si 0.751 3.249 23 H -0.195 1.195 24 H -0.204 1.204 25 H -0.194 1.194 26 C -0.224 4.224 27 C -0.175 4.175 28 H 0.081 0.919 29 H 0.059 0.941 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.102 0.898 33 H 0.290 0.710 34 H 0.101 0.899 35 H 0.153 0.847 36 H 0.108 0.892 37 H 0.108 0.892 38 H 0.131 0.869 39 H 0.152 0.848 40 H 0.075 0.925 41 H 0.121 0.879 42 H 0.099 0.901 43 H 0.083 0.917 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -5.944 5.720 18.789 20.520 hybrid contribution -1.006 0.043 -1.469 1.781 sum -6.949 5.763 17.320 19.532 Atomic orbital electron populations 1.21631 0.94015 1.02199 1.01524 1.22332 0.97513 0.96127 1.04194 1.21226 0.78921 0.96634 0.97872 0.91433 1.22122 0.91625 0.97865 0.99078 0.83165 1.23069 0.84374 0.77430 0.81285 1.90780 1.60782 1.63242 1.28438 1.84465 1.48592 1.58221 1.40265 1.22901 0.89405 0.96999 1.05023 1.22426 0.97557 0.96143 0.85874 1.58883 1.15447 1.77561 1.33856 1.03721 0.72486 0.76544 0.72599 1.93429 1.65507 1.61570 1.75977 1.93440 1.49265 1.79657 1.75739 1.29923 1.08953 1.18815 1.11339 1.18389 0.90684 0.95085 0.95422 1.20774 1.24564 0.92509 1.20812 0.93213 1.25409 0.95176 0.99064 0.94878 1.70045 1.24004 1.29307 1.28903 0.85997 0.78663 0.81931 0.78339 1.19490 1.20424 1.19376 1.23210 0.93577 1.03936 1.01682 1.22412 1.03528 0.96192 0.95395 0.91908 0.94142 0.91381 0.91099 0.89809 0.70953 0.89901 0.84728 0.89238 0.89211 0.86925 0.84799 0.92546 0.87916 0.90079 0.91664 0.89857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.50 9.14 71.98 0.66 -2.84 16 2 C -0.16 -4.86 5.37 30.59 0.16 -4.70 16 3 C 0.16 4.57 2.50 45.34 0.11 4.69 16 4 H 0.07 2.30 6.81 -2.38 -0.02 2.28 16 5 C -0.09 -1.58 2.32 -10.35 -0.02 -1.60 16 6 H 0.15 1.92 7.80 -2.39 -0.02 1.91 16 7 C 0.50 9.53 6.50 71.24 0.46 9.99 16 8 O -0.54 -15.05 15.51 21.98 0.34 -14.71 16 9 O -0.50 -5.82 13.42 -51.37 -0.69 -6.51 16 10 C -0.10 -1.46 6.54 32.06 0.21 -1.25 16 11 C 0.10 2.12 6.97 86.93 0.61 2.73 16 12 N -1.02 -31.24 3.32 -483.88 -1.61 -32.84 16 13 S 2.65 112.44 4.81 -56.49 -0.27 112.17 16 14 O -0.97 -48.96 14.07 -127.65 -1.80 -50.76 16 15 O -0.99 -45.18 17.70 -127.65 -2.26 -47.44 16 16 C -0.56 -23.60 6.28 71.98 0.45 -23.15 16 17 C 0.01 0.31 1.73 -52.92 -0.09 0.21 16 18 C -0.55 -31.16 6.88 25.60 0.18 -30.98 16 19 H 0.05 2.93 7.82 -2.91 -0.02 2.91 16 20 C 0.06 3.39 5.43 84.65 0.46 3.85 16 21 N -0.89 -51.13 12.66 21.45 0.27 -50.86 16 22 Si 0.93 46.63 29.54 68.60 2.03 48.66 16 23 H -0.27 -13.62 7.11 99.48 0.71 -12.91 16 24 H -0.28 -14.05 7.11 99.48 0.71 -13.35 16 25 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 26 C -0.19 -7.96 9.88 30.60 0.30 -7.66 16 27 C -0.14 -6.28 9.18 30.60 0.28 -6.00 16 28 H 0.06 1.32 6.36 -2.39 -0.02 1.30 16 29 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.07 2.73 5.50 -2.39 -0.01 2.72 16 32 H 0.08 2.09 8.07 -2.39 -0.02 2.07 16 33 H 0.43 1.76 9.10 -74.06 -0.67 1.08 16 34 H 0.08 1.18 8.04 -2.39 -0.02 1.16 16 35 H 0.13 0.89 8.14 -2.38 -0.02 0.87 16 36 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.09 1.63 8.14 -2.39 -0.02 1.62 16 38 H 0.11 5.01 8.14 -2.39 -0.02 4.99 16 39 H 0.13 4.45 7.95 -2.39 -0.02 4.43 16 40 H 0.27 14.59 8.32 -92.71 -0.77 13.82 16 41 H 0.10 3.63 8.09 -2.39 -0.02 3.61 16 42 H 0.08 3.47 8.14 -2.39 -0.02 3.45 16 43 H 0.06 3.28 8.14 -2.39 -0.02 3.26 16 44 H 0.08 3.45 8.14 -2.39 -0.02 3.43 16 Total: -1.00 -78.20 368.21 0.12 -78.08 By element: Atomic # 1 Polarization: 20.59 SS G_CDS: 0.34 Total: 20.92 kcal Atomic # 6 Polarization: -60.48 SS G_CDS: 3.77 Total: -56.71 kcal Atomic # 7 Polarization: -82.37 SS G_CDS: -1.33 Total: -83.70 kcal Atomic # 8 Polarization: -115.01 SS G_CDS: -4.40 Total: -119.41 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 2.03 Total: 48.66 kcal Atomic # 16 Polarization: 112.44 SS G_CDS: -0.27 Total: 112.17 kcal Total: -78.20 0.12 -78.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579718148.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.355 kcal (2) G-P(sol) polarization free energy of solvation -78.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.27 seconds