Wall clock time and date at job start Tue Mar 31 2020 17:45:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.47056 * 2 1 4 4 C 1.52999 * 109.46967 * 239.99813 * 2 1 3 5 5 H 1.09010 * 109.47001 * 174.62155 * 4 2 1 6 6 N 1.46496 * 109.47428 * 294.61853 * 4 2 1 7 7 S 1.65596 * 120.00531 * 215.00199 * 6 4 2 8 8 O 1.42103 * 104.27343 * 308.92879 * 7 6 4 9 9 O 1.42098 * 104.27990 * 181.07604 * 7 6 4 10 10 C 1.81394 * 104.44974 * 65.00119 * 7 6 4 11 11 C 1.53001 * 109.47444 * 185.72879 * 10 7 6 12 12 C 1.50697 * 115.55051 * 294.44397 * 11 10 7 13 13 H 1.08006 * 119.99989 * 94.71301 * 12 11 10 14 14 C 1.37873 * 120.00185 * 274.43527 * 12 11 10 15 15 N 1.31523 * 119.99394 * 355.53130 * 14 12 11 16 16 Si 1.86791 * 120.00568 * 175.52761 * 14 12 11 17 17 H 1.48507 * 109.47172 * 90.00005 * 16 14 12 18 18 H 1.48498 * 109.47526 * 210.00335 * 16 14 12 19 19 H 1.48503 * 109.47202 * 330.00634 * 16 14 12 20 20 C 1.53005 * 117.49494 * 80.10900 * 11 10 7 21 21 C 1.53005 * 117.50123 * 148.76915 * 11 10 7 22 22 C 1.50704 * 109.47284 * 54.62562 * 4 2 1 23 23 O 1.20825 * 119.99747 * 251.20957 * 22 4 2 24 24 O 1.34227 * 119.99967 * 71.20587 * 22 4 2 25 25 C 1.52995 * 109.47280 * 119.99951 * 2 1 3 26 26 C 1.53006 * 117.50053 * 253.28004 * 25 2 1 27 27 C 1.52995 * 59.99965 * 252.50826 * 26 25 2 28 28 H 1.08993 * 109.47370 * 299.99883 * 1 2 3 29 29 H 1.08999 * 109.47104 * 60.00386 * 1 2 3 30 30 H 1.09005 * 109.47056 * 179.97438 * 1 2 3 31 31 H 0.97004 * 119.99589 * 35.00427 * 6 4 2 32 32 H 1.08996 * 109.47335 * 65.72760 * 10 7 6 33 33 H 1.09005 * 109.47497 * 305.72767 * 10 7 6 34 34 H 0.97005 * 119.99373 * 184.99739 * 15 14 12 35 35 H 1.09000 * 117.49745 * 215.00215 * 20 11 10 36 36 H 1.08997 * 117.50247 * 0.02756 * 20 11 10 37 37 H 1.08997 * 117.49467 * 359.97438 * 21 11 10 38 38 H 1.08994 * 117.49607 * 144.97692 * 21 11 10 39 39 H 0.96703 * 116.99454 * 185.02652 * 24 22 4 40 40 H 1.09002 * 115.55151 * 38.98426 * 25 2 1 41 41 H 1.09000 * 117.49332 * 0.02562 * 26 25 2 42 42 H 1.08992 * 117.50080 * 145.01653 * 26 25 2 43 43 H 1.08999 * 117.49829 * 252.50981 * 27 26 25 44 44 H 1.09002 * 117.50280 * 107.48481 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2492 5 1 3.1258 -0.6386 -1.2987 6 7 1.6603 -2.1348 -1.1862 7 16 2.6736 -3.2925 -1.7986 8 8 2.9742 -2.8367 -3.1105 9 8 1.9779 -4.5137 -1.5888 10 6 4.1463 -3.2094 -0.7428 11 6 5.2251 -4.1416 -1.2978 12 6 4.8955 -5.6116 -1.2613 13 1 4.4646 -6.0901 -2.1284 14 6 5.1493 -6.3470 -0.1229 15 7 5.7590 -5.7871 0.8991 16 14 4.6271 -8.1381 -0.0322 17 1 5.7268 -9.0004 -0.5346 18 1 4.3230 -8.4944 1.3770 19 1 3.4162 -8.3436 -0.8670 20 6 6.0599 -3.6338 -2.4752 21 6 6.6855 -3.7395 -1.0821 22 6 1.4319 -0.0919 -2.4761 23 8 0.5938 -0.6892 -3.1092 24 8 1.8212 1.1322 -2.8655 25 6 2.0400 -0.7212 1.2492 26 6 2.6436 0.1365 2.3632 27 6 3.5508 -0.7333 1.4907 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 0.8152 -2.3926 -0.7858 32 1 3.8854 -3.5178 0.2696 33 1 4.5236 -2.1869 -0.7252 34 1 6.0025 -6.3220 1.6709 35 1 6.3707 -4.3631 -3.2233 36 1 5.8409 -2.6356 -2.8541 37 1 6.8777 -2.8106 -0.5451 38 1 7.4077 -4.5382 -0.9134 39 1 1.3508 1.5253 -3.6134 40 1 1.4760 -1.6060 1.5444 41 1 2.6770 1.2146 2.2062 42 1 2.4767 -0.1839 3.3915 43 1 3.9806 -1.6260 1.9450 44 1 4.1813 -0.2275 0.7595 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000581670286.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:45:42 Heat of formation + Delta-G solvation = -144.259905 kcal Electronic energy + Delta-G solvation = -28603.063298 eV Core-core repulsion = 24648.128142 eV Total energy + Delta-G solvation = -3954.935156 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.57731 -39.21886 -38.55045 -38.00079 -37.16435 -36.84009 -36.00023 -34.06024 -32.55687 -29.90901 -28.45367 -27.48258 -24.97004 -23.11603 -22.92662 -22.39184 -21.61185 -20.90499 -20.27454 -19.09995 -18.67508 -18.40918 -17.93796 -17.03743 -16.78131 -16.71513 -16.55778 -16.15540 -15.86969 -15.56494 -15.41257 -14.84801 -14.67008 -14.26904 -13.78806 -13.64964 -13.42270 -13.14135 -13.03389 -12.98429 -12.94997 -12.85474 -12.68034 -12.52020 -12.47713 -12.39030 -12.23024 -12.16617 -12.02118 -11.88280 -11.71746 -11.47681 -11.04370 -10.99681 -10.87819 -10.61778 -10.48282 -9.87633 -8.17708 -6.32950 -0.61965 1.17964 1.35777 1.39508 1.51722 1.77167 2.13596 2.39811 2.89524 2.96915 3.07721 3.33558 3.45696 3.64285 3.66599 3.73075 3.98889 4.06138 4.19650 4.26563 4.32827 4.38860 4.49286 4.52643 4.59135 4.65535 4.75660 4.86863 4.93511 4.97041 5.02487 5.12298 5.22522 5.26389 5.27902 5.42269 5.47797 5.48616 5.62715 5.67735 5.72632 5.94909 6.24160 6.72520 6.99594 7.39216 8.87651 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.014225 B = 0.004897 C = 0.004499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.875667 B = 5716.005530 C = 6221.851687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.045 4.045 3 H 0.122 0.878 4 C 0.163 3.837 5 H 0.132 0.868 6 N -1.092 6.092 7 S 2.609 3.391 8 O -0.994 6.994 9 O -0.993 6.993 10 C -0.535 4.535 11 C 0.006 3.994 12 C -0.534 4.534 13 H 0.042 0.958 14 C 0.047 3.953 15 N -0.885 5.885 16 Si 0.927 3.073 17 H -0.269 1.269 18 H -0.272 1.272 19 H -0.280 1.280 20 C -0.202 4.202 21 C -0.123 4.123 22 C 0.468 3.532 23 O -0.536 6.536 24 O -0.505 6.505 25 C -0.156 4.156 26 C -0.156 4.156 27 C -0.198 4.198 28 H 0.087 0.913 29 H 0.050 0.950 30 H 0.053 0.947 31 H 0.424 0.576 32 H 0.131 0.869 33 H 0.140 0.860 34 H 0.265 0.735 35 H 0.076 0.924 36 H 0.099 0.901 37 H 0.093 0.907 38 H 0.066 0.934 39 H 0.427 0.573 40 H 0.103 0.897 41 H 0.113 0.887 42 H 0.095 0.905 43 H 0.084 0.916 44 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.233 18.652 3.515 19.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.065 4.065 3 H 0.140 0.860 4 C 0.053 3.947 5 H 0.149 0.851 6 N -0.852 5.852 7 S 2.708 3.292 8 O -0.984 6.984 9 O -0.984 6.984 10 C -0.668 4.668 11 C 0.004 3.996 12 C -0.572 4.572 13 H 0.060 0.940 14 C -0.156 4.156 15 N -0.521 5.521 16 Si 0.752 3.248 17 H -0.194 1.194 18 H -0.197 1.197 19 H -0.206 1.206 20 C -0.239 4.239 21 C -0.162 4.162 22 C 0.308 3.692 23 O -0.425 6.425 24 O -0.318 6.318 25 C -0.175 4.175 26 C -0.193 4.193 27 C -0.235 4.235 28 H 0.106 0.894 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.261 0.739 32 H 0.149 0.851 33 H 0.158 0.842 34 H 0.075 0.925 35 H 0.095 0.905 36 H 0.118 0.882 37 H 0.111 0.889 38 H 0.084 0.916 39 H 0.289 0.711 40 H 0.121 0.879 41 H 0.131 0.869 42 H 0.114 0.886 43 H 0.103 0.897 44 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -6.320 17.787 3.027 19.118 hybrid contribution -0.559 -1.245 -0.002 1.365 sum -6.879 16.543 3.025 18.170 Atomic orbital electron populations 1.21898 0.93632 1.02483 1.02929 1.20977 0.96968 0.99763 0.88798 0.86007 1.20591 1.01446 0.81055 0.91577 0.85084 1.55439 1.35161 1.15945 1.78637 1.04884 0.76516 0.72319 0.75477 1.93479 1.85991 1.81386 1.37496 1.93493 1.72692 1.45285 1.86892 1.29804 1.15322 1.07368 1.14346 1.18406 0.90048 0.92197 0.98955 1.20684 1.43908 0.93551 0.99036 0.93976 1.25406 0.94121 1.01091 0.95018 1.70024 1.38865 1.36586 1.06655 0.86029 0.78973 0.81909 0.77874 1.19448 1.19700 1.20569 1.23258 1.07152 1.01554 0.91945 1.22452 0.96337 1.00723 0.96672 1.24218 0.79407 0.79653 0.85913 1.90711 1.33119 1.63482 1.55220 1.84462 1.62679 1.31262 1.53432 1.22225 0.96262 1.02143 0.96820 1.23062 1.02189 0.98446 0.95612 1.23139 0.92861 1.03056 1.04487 0.89399 0.93134 0.92760 0.73885 0.85109 0.84198 0.92535 0.90517 0.88233 0.88851 0.91553 0.71134 0.87856 0.86854 0.88621 0.89707 0.87537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.33 8.74 71.98 0.63 -1.70 16 2 C -0.05 -0.70 2.43 -10.80 -0.03 -0.73 16 3 H 0.12 1.32 7.94 -2.38 -0.02 1.31 16 4 C 0.16 3.70 2.23 44.25 0.10 3.80 16 5 H 0.13 2.58 6.72 -2.38 -0.02 2.57 16 6 N -1.09 -31.79 4.27 -172.52 -0.74 -32.52 16 7 S 2.61 105.23 5.13 -56.49 -0.29 104.94 16 8 O -0.99 -44.48 17.77 -127.65 -2.27 -46.75 16 9 O -0.99 -49.15 17.74 -127.65 -2.26 -51.42 16 10 C -0.53 -20.39 5.79 71.98 0.42 -19.98 16 11 C 0.01 0.29 1.42 -52.92 -0.08 0.22 16 12 C -0.53 -29.44 8.19 25.60 0.21 -29.23 16 13 H 0.04 2.46 7.82 -2.91 -0.02 2.44 16 14 C 0.05 2.55 5.43 84.65 0.46 3.00 16 15 N -0.89 -47.32 12.63 21.45 0.27 -47.05 16 16 Si 0.93 44.06 29.54 68.60 2.03 46.08 16 17 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 18 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 19 H -0.28 -13.94 7.11 99.48 0.71 -13.23 16 20 C -0.20 -8.48 9.96 30.62 0.30 -8.17 16 21 C -0.12 -5.26 9.11 30.62 0.28 -4.98 16 22 C 0.47 11.82 6.06 71.24 0.43 12.25 16 23 O -0.54 -17.90 17.23 21.97 0.38 -17.52 16 24 O -0.51 -8.74 13.42 -51.39 -0.69 -9.43 16 25 C -0.16 -2.60 4.53 -10.79 -0.05 -2.65 16 26 C -0.16 -2.16 10.18 30.59 0.31 -1.85 16 27 C -0.20 -3.61 9.48 30.59 0.29 -3.32 16 28 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.05 0.83 7.06 -2.39 -0.02 0.81 16 30 H 0.05 0.94 6.75 -2.38 -0.02 0.92 16 31 H 0.42 11.22 7.31 -96.74 -0.71 10.51 16 32 H 0.13 5.14 8.14 -2.39 -0.02 5.12 16 33 H 0.14 4.05 6.90 -2.39 -0.02 4.03 16 34 H 0.27 13.50 8.32 -92.70 -0.77 12.73 16 35 H 0.08 3.32 8.14 -2.39 -0.02 3.30 16 36 H 0.10 3.63 8.14 -2.39 -0.02 3.61 16 37 H 0.09 3.43 8.14 -2.39 -0.02 3.41 16 38 H 0.07 3.14 8.14 -2.39 -0.02 3.12 16 39 H 0.43 3.97 9.10 -74.06 -0.67 3.30 16 40 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 41 H 0.11 1.14 8.08 -2.39 -0.02 1.12 16 42 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 43 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 44 H 0.11 1.68 7.97 -2.39 -0.02 1.66 16 Total: -1.00 -76.78 379.84 -0.64 -77.42 By element: Atomic # 1 Polarization: 29.93 SS G_CDS: -0.35 Total: 29.58 kcal Atomic # 6 Polarization: -56.62 SS G_CDS: 3.28 Total: -53.34 kcal Atomic # 7 Polarization: -79.11 SS G_CDS: -0.47 Total: -79.57 kcal Atomic # 8 Polarization: -120.27 SS G_CDS: -4.84 Total: -125.11 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.08 kcal Atomic # 16 Polarization: 105.23 SS G_CDS: -0.29 Total: 104.94 kcal Total: -76.78 -0.64 -77.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581670286.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.837 kcal (2) G-P(sol) polarization free energy of solvation -76.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds