Wall clock time and date at job start Tue Mar 31 2020 17:45:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.46952 * 2 1 4 4 C 1.52997 * 109.47207 * 120.00200 * 2 1 3 5 5 H 1.09002 * 109.47328 * 60.00030 * 4 2 1 6 6 N 1.46502 * 109.46967 * 299.99842 * 4 2 1 7 7 S 1.65603 * 120.00053 * 145.00203 * 6 4 2 8 8 O 1.42095 * 104.27897 * 181.07151 * 7 6 4 9 9 O 1.42109 * 104.27634 * 308.92655 * 7 6 4 10 10 C 1.81396 * 104.45013 * 64.99518 * 7 6 4 11 11 C 1.53001 * 109.46969 * 174.69553 * 10 7 6 12 12 C 1.50694 * 115.55282 * 65.22900 * 11 10 7 13 13 H 1.07999 * 119.99954 * 264.78831 * 12 11 10 14 14 C 1.37881 * 120.00079 * 84.78034 * 12 11 10 15 15 N 1.31511 * 119.99653 * 352.22893 * 14 12 11 16 16 Si 1.86795 * 119.99841 * 172.23598 * 14 12 11 17 17 H 1.48503 * 109.47467 * 359.97438 * 16 14 12 18 18 H 1.48502 * 109.47402 * 120.00115 * 16 14 12 19 19 H 1.48504 * 109.46780 * 239.99905 * 16 14 12 20 20 C 1.53007 * 117.49695 * 279.55664 * 11 10 7 21 21 C 1.53003 * 117.49731 * 210.89976 * 11 10 7 22 22 C 1.50704 * 109.47171 * 179.97438 * 4 2 1 23 23 O 1.20832 * 119.99372 * 119.99726 * 22 4 2 24 24 O 1.34225 * 120.00168 * 300.00073 * 22 4 2 25 25 C 1.53007 * 109.46787 * 240.00042 * 2 1 3 26 26 C 1.53004 * 117.49611 * 128.75116 * 25 2 1 27 27 C 1.52993 * 117.49932 * 60.08938 * 25 2 1 28 28 H 1.09000 * 109.47547 * 59.99852 * 1 2 3 29 29 H 1.08997 * 109.47637 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47186 * 299.99911 * 1 2 3 31 31 H 0.96997 * 119.99825 * 324.99935 * 6 4 2 32 32 H 1.09000 * 109.47456 * 294.69797 * 10 7 6 33 33 H 1.09009 * 109.46855 * 54.69924 * 10 7 6 34 34 H 0.97002 * 119.99711 * 185.01958 * 15 14 12 35 35 H 1.08998 * 117.50153 * 359.97438 * 20 11 10 36 36 H 1.09001 * 117.49775 * 145.02607 * 20 11 10 37 37 H 1.08999 * 117.49554 * 214.98101 * 21 11 10 38 38 H 1.08999 * 117.50030 * 359.97232 * 21 11 10 39 39 H 0.96693 * 117.00108 * 180.02562 * 24 22 4 40 40 H 1.08999 * 115.54947 * 274.41449 * 25 2 1 41 41 H 1.09004 * 117.49889 * 359.97438 * 26 25 2 42 42 H 1.08996 * 117.50002 * 145.02140 * 26 25 2 43 43 H 1.08999 * 117.50120 * 214.97761 * 27 25 2 44 44 H 1.09004 * 117.50243 * 359.97438 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6767 -1.7490 1.2492 6 7 1.5517 -0.0307 2.4454 7 16 1.1579 -0.8984 3.7997 8 8 0.7094 0.0816 4.7258 9 8 0.2825 -1.9119 3.3243 10 6 2.7292 -1.6203 4.3476 11 6 2.5207 -2.3457 5.6785 12 6 1.6155 -3.5494 5.6278 13 1 0.5689 -3.4489 5.8745 14 6 2.1235 -4.7792 5.2662 15 7 3.3566 -4.8757 4.8193 16 14 1.0602 -6.3082 5.4112 17 1 -0.2771 -5.9331 5.9368 18 1 0.9089 -6.9346 4.0733 19 1 1.7037 -7.2724 6.3393 20 6 2.4945 -1.4952 6.9501 21 6 3.7005 -2.3895 6.6517 22 6 3.5470 -0.7218 1.2489 23 8 4.1515 -0.1986 2.1549 24 8 4.2178 -1.3034 0.2421 25 6 2.0399 -0.7213 -1.2493 26 6 3.0763 0.0039 -2.1101 27 6 1.6373 -0.1483 -2.6096 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.4591 0.9349 2.4441 32 1 3.0842 -2.3288 3.5993 33 1 3.4672 -0.8285 4.4772 34 1 3.6902 -5.7274 4.4966 35 1 2.6263 -0.4190 6.8387 36 1 1.8229 -1.8067 7.7502 37 1 3.8217 -3.2889 7.2554 38 1 4.6254 -1.9019 6.3436 39 1 5.1834 -1.2787 0.2859 40 1 2.1252 -1.8046 -1.1648 41 1 3.3945 0.9950 -1.7866 42 1 3.8431 -0.6024 -2.5923 43 1 1.4581 -0.8547 -3.4202 44 1 1.0088 0.7422 -2.6146 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000581670287.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:45:48 Heat of formation + Delta-G solvation = -117.634445 kcal Electronic energy + Delta-G solvation = -28390.353806 eV Core-core repulsion = 24436.573217 eV Total energy + Delta-G solvation = -3953.780589 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 1.88 seconds Orbital eigenvalues (eV) -40.48987 -38.20031 -36.72511 -36.39830 -36.19054 -35.28775 -35.00951 -32.03708 -31.33076 -28.14426 -27.65126 -25.44535 -23.59167 -22.39642 -21.70770 -21.18112 -20.35511 -19.59292 -18.71883 -18.07622 -17.21675 -16.85478 -16.50900 -16.04553 -15.56242 -15.11828 -15.00979 -14.77425 -14.58884 -14.22235 -13.73146 -13.52563 -13.13010 -13.03775 -12.70969 -12.14449 -11.93659 -11.90693 -11.83225 -11.60454 -11.44917 -11.33388 -11.23756 -11.11132 -11.01773 -10.95130 -10.91802 -10.79100 -10.54586 -10.42788 -10.37360 -10.12016 -10.05233 -9.76757 -9.39118 -8.92890 -8.56512 -8.07773 -6.13346 -4.23913 1.00849 2.24236 2.86585 3.28096 3.35907 3.42919 3.43428 3.68596 4.30826 4.37225 4.49494 4.55041 4.69501 4.86794 4.97243 5.00289 5.14364 5.19988 5.23447 5.29246 5.34651 5.49225 5.50713 5.60996 5.73741 5.76131 5.88584 5.99097 6.00524 6.04050 6.13803 6.27007 6.31896 6.41599 6.55275 6.67478 6.75345 7.00908 7.07204 7.26803 7.41822 7.80870 7.95566 8.22200 8.82018 9.46946 10.94250 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.014059 B = 0.004588 C = 0.004359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1991.141625 B = 6100.955999 C = 6422.347173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.055 4.055 3 H 0.079 0.921 4 C 0.168 3.832 5 H 0.134 0.866 6 N -1.107 6.107 7 S 2.600 3.400 8 O -0.968 6.968 9 O -0.946 6.946 10 C -0.544 4.544 11 C 0.041 3.959 12 C -0.514 4.514 13 H 0.069 0.931 14 C 0.081 3.919 15 N -0.874 5.874 16 Si 0.892 3.108 17 H -0.268 1.268 18 H -0.281 1.281 19 H -0.283 1.283 20 C -0.208 4.208 21 C -0.140 4.140 22 C 0.460 3.540 23 O -0.501 6.501 24 O -0.504 6.504 25 C -0.140 4.140 26 C -0.168 4.168 27 C -0.180 4.180 28 H 0.061 0.939 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.415 0.585 32 H 0.126 0.874 33 H 0.108 0.892 34 H 0.262 0.738 35 H 0.075 0.925 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.066 0.934 39 H 0.405 0.595 40 H 0.115 0.885 41 H 0.087 0.913 42 H 0.094 0.906 43 H 0.093 0.907 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.739 9.454 -14.244 17.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.075 4.075 3 H 0.098 0.902 4 C 0.057 3.943 5 H 0.152 0.848 6 N -0.861 5.861 7 S 2.698 3.302 8 O -0.959 6.959 9 O -0.936 6.936 10 C -0.678 4.678 11 C 0.039 3.961 12 C -0.551 4.551 13 H 0.087 0.913 14 C -0.124 4.124 15 N -0.510 5.510 16 Si 0.719 3.281 17 H -0.192 1.192 18 H -0.206 1.206 19 H -0.209 1.209 20 C -0.246 4.246 21 C -0.179 4.179 22 C 0.299 3.701 23 O -0.388 6.388 24 O -0.315 6.315 25 C -0.159 4.159 26 C -0.205 4.205 27 C -0.217 4.217 28 H 0.080 0.920 29 H 0.087 0.913 30 H 0.081 0.919 31 H 0.248 0.752 32 H 0.144 0.856 33 H 0.127 0.873 34 H 0.072 0.928 35 H 0.094 0.906 36 H 0.105 0.895 37 H 0.104 0.896 38 H 0.085 0.915 39 H 0.264 0.736 40 H 0.133 0.867 41 H 0.106 0.894 42 H 0.112 0.888 43 H 0.112 0.888 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.261 9.192 -13.674 16.478 hybrid contribution 1.172 -0.531 -0.050 1.288 sum 0.911 8.660 -13.724 16.254 Atomic orbital electron populations 1.21816 0.92925 1.03481 1.02107 1.20887 0.97384 0.98768 0.90464 0.90223 1.20315 0.85937 1.00507 0.87506 0.84842 1.55995 1.82389 1.20046 1.27709 1.05462 0.78227 0.73976 0.72507 1.93514 1.80630 1.59879 1.61837 1.93547 1.61960 1.59120 1.78932 1.29933 1.18209 1.09605 1.10043 1.18324 0.99716 0.95034 0.83071 1.20577 0.94863 0.90970 1.48739 0.91259 1.24964 0.94715 0.98937 0.93753 1.70004 1.15295 1.25696 1.40001 0.86523 0.80986 0.82591 0.78025 1.19183 1.20640 1.20855 1.23204 1.03320 0.95920 1.02140 1.22540 0.91169 0.99923 1.04256 1.24185 0.92347 0.74569 0.79001 1.90729 1.70165 1.42070 1.35833 1.84591 1.26256 1.72959 1.47674 1.22187 1.03366 0.99970 0.90348 1.22919 0.92338 1.01459 1.03830 1.22971 0.98335 1.03201 0.97215 0.91992 0.91343 0.91859 0.75163 0.85579 0.87324 0.92827 0.90646 0.89497 0.89594 0.91498 0.73624 0.86696 0.89415 0.88759 0.88834 0.88958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 8.88 37.16 0.33 -1.15 16 2 C -0.05 -0.56 2.23 -90.62 -0.20 -0.76 16 3 H 0.08 0.74 7.90 -51.93 -0.41 0.33 16 4 C 0.17 2.25 2.31 -69.08 -0.16 2.09 16 5 H 0.13 1.89 7.48 -51.93 -0.39 1.50 16 6 N -1.11 -16.63 4.08 -5.88 -0.02 -16.65 16 7 S 2.60 53.02 5.18 -107.50 -0.56 52.47 16 8 O -0.97 -21.48 18.08 -57.54 -1.04 -22.52 16 9 O -0.95 -21.77 17.01 -57.54 -0.98 -22.75 16 10 C -0.54 -12.03 4.73 37.16 0.18 -11.85 16 11 C 0.04 1.02 1.32 -155.66 -0.21 0.82 16 12 C -0.51 -14.14 8.14 -34.44 -0.28 -14.42 16 13 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 14 C 0.08 2.22 5.38 -17.82 -0.10 2.12 16 15 N -0.87 -24.14 12.98 55.43 0.72 -23.42 16 16 Si 0.89 21.33 29.55 -169.99 -5.02 16.31 16 17 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 18 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 20 C -0.21 -4.73 9.96 -26.69 -0.27 -4.99 16 21 C -0.14 -3.29 9.49 -26.69 -0.25 -3.54 16 22 C 0.46 6.27 7.34 36.01 0.26 6.53 16 23 O -0.50 -8.24 15.54 -18.76 -0.29 -8.53 16 24 O -0.50 -5.26 10.70 -39.24 -0.42 -5.68 16 25 C -0.14 -1.29 3.43 -90.62 -0.31 -1.60 16 26 C -0.17 -1.36 9.28 -26.69 -0.25 -1.60 16 27 C -0.18 -1.40 9.74 -26.69 -0.26 -1.66 16 28 H 0.06 0.51 7.29 -51.93 -0.38 0.13 16 29 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.06 0.67 7.60 -51.93 -0.39 0.28 16 31 H 0.42 5.21 8.80 -34.47 -0.30 4.91 16 32 H 0.13 2.90 8.07 -51.92 -0.42 2.48 16 33 H 0.11 2.23 7.43 -51.92 -0.39 1.85 16 34 H 0.26 6.86 8.32 -40.82 -0.34 6.52 16 35 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 36 H 0.09 1.92 8.14 -51.93 -0.42 1.50 16 37 H 0.09 2.11 8.14 -51.93 -0.42 1.69 16 38 H 0.07 1.48 8.14 -51.93 -0.42 1.05 16 39 H 0.41 2.81 9.10 45.56 0.41 3.23 16 40 H 0.12 1.13 7.99 -51.93 -0.41 0.72 16 41 H 0.09 0.70 8.05 -51.93 -0.42 0.28 16 42 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.09 0.66 7.61 -51.93 -0.40 0.27 16 LS Contribution 377.14 15.07 5.68 5.68 Total: -1.00 -33.84 377.14 -9.44 -43.28 By element: Atomic # 1 Polarization: 17.84 SS G_CDS: -6.00 Total: 11.84 kcal Atomic # 6 Polarization: -28.51 SS G_CDS: -1.51 Total: -30.02 kcal Atomic # 7 Polarization: -40.76 SS G_CDS: 0.70 Total: -40.07 kcal Atomic # 8 Polarization: -56.75 SS G_CDS: -2.73 Total: -59.48 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: 53.02 SS G_CDS: -0.56 Total: 52.47 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.84 -9.44 -43.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581670287.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.358 kcal (2) G-P(sol) polarization free energy of solvation -33.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.88 seconds