Wall clock time and date at job start Tue Mar 31 2020 17:46:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47394 * 2 1 4 4 C 1.52993 * 109.47319 * 239.99791 * 2 1 3 5 5 H 1.09004 * 109.47310 * 185.00107 * 4 2 1 6 6 N 1.46500 * 109.47474 * 64.99877 * 4 2 1 7 7 S 1.65598 * 119.99960 * 144.99694 * 6 4 2 8 8 O 1.42103 * 104.27473 * 181.07416 * 7 6 4 9 9 O 1.42101 * 104.28125 * 308.93290 * 7 6 4 10 10 C 1.81399 * 104.44718 * 65.00620 * 7 6 4 11 11 C 1.53008 * 109.47110 * 174.68915 * 10 7 6 12 12 C 1.50705 * 115.54479 * 65.22500 * 11 10 7 13 13 H 1.08001 * 119.99969 * 264.77826 * 12 11 10 14 14 C 1.37871 * 120.00020 * 84.78525 * 12 11 10 15 15 N 1.31517 * 120.00044 * 352.22918 * 14 12 11 16 16 Si 1.86802 * 120.00092 * 172.22798 * 14 12 11 17 17 H 1.48495 * 109.47132 * 90.00210 * 16 14 12 18 18 H 1.48498 * 109.46982 * 210.00167 * 16 14 12 19 19 H 1.48503 * 109.46815 * 329.99584 * 16 14 12 20 20 C 1.52988 * 117.50146 * 279.55751 * 11 10 7 21 21 C 1.52994 * 117.50013 * 210.89402 * 11 10 7 22 22 C 1.50707 * 109.47312 * 305.00242 * 4 2 1 23 23 O 1.20813 * 120.00200 * 119.99857 * 22 4 2 24 24 O 1.34231 * 119.99608 * 300.00321 * 22 4 2 25 25 C 1.53002 * 109.46838 * 119.99659 * 2 1 3 26 26 C 1.52998 * 117.50098 * 248.74806 * 25 2 1 27 27 C 1.53001 * 117.49796 * 180.08790 * 25 2 1 28 28 H 1.08998 * 109.47394 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47572 * 300.00252 * 1 2 3 30 30 H 1.09004 * 109.47264 * 60.00130 * 1 2 3 31 31 H 0.96996 * 119.99756 * 325.00855 * 6 4 2 32 32 H 1.09000 * 109.47101 * 294.69059 * 10 7 6 33 33 H 1.09001 * 109.47081 * 54.69499 * 10 7 6 34 34 H 0.97002 * 119.99808 * 185.03223 * 15 14 12 35 35 H 1.09004 * 117.50225 * 359.97438 * 20 11 10 36 36 H 1.09003 * 117.50152 * 145.01757 * 20 11 10 37 37 H 1.09006 * 117.49922 * 214.98376 * 21 11 10 38 38 H 1.08999 * 117.49796 * 359.97438 * 21 11 10 39 39 H 0.96704 * 116.99994 * 180.02562 * 24 22 4 40 40 H 1.09001 * 115.54852 * 34.41947 * 25 2 1 41 41 H 1.09003 * 117.49955 * 359.97438 * 26 25 2 42 42 H 1.08993 * 117.50126 * 145.01776 * 26 25 2 43 43 H 1.09001 * 117.49776 * 214.97955 * 27 25 2 44 44 H 1.09003 * 117.49915 * 359.97438 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2491 5 1 3.1264 -0.7995 -1.2055 6 7 1.6525 0.0352 -2.4424 7 16 2.6616 0.0862 -3.7543 8 8 1.9816 0.9146 -4.6875 9 8 3.9190 0.4696 -3.2147 10 6 2.7193 -1.6270 -4.3478 11 6 3.5231 -1.6894 -5.6483 12 6 4.9847 -1.3431 -5.5261 13 1 5.3203 -0.3373 -5.7313 14 6 5.8934 -2.3103 -5.1525 15 7 5.4713 -3.4909 -4.7555 16 14 7.7243 -1.9439 -5.2103 17 1 8.1586 -1.3845 -3.9050 18 1 8.4715 -3.1975 -5.4848 19 1 7.9981 -0.9585 -6.2870 20 6 2.8082 -1.2902 -6.9406 21 6 3.1338 -2.7609 -6.6686 22 6 1.4391 -2.1019 -1.3127 23 8 0.7572 -2.4210 -2.2575 24 8 1.6615 -2.9769 -0.3194 25 6 2.0399 -0.7212 1.2493 26 6 2.7392 0.1231 2.3166 27 6 3.5549 -0.8262 1.4355 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 0.8049 0.5063 -2.4638 32 1 3.1954 -2.2562 -3.5958 33 1 1.7052 -1.9826 -4.5302 34 1 6.1050 -4.1461 -4.4236 35 1 1.7649 -0.9834 -6.8646 36 1 3.3950 -0.7774 -7.7027 37 1 3.9349 -3.2152 -7.2519 38 1 2.3054 -3.4217 -6.4133 39 1 1.2554 -3.8504 -0.4047 40 1 1.4317 -1.5594 1.5894 41 1 2.8363 1.1924 2.1285 42 1 2.5913 -0.1597 3.3587 43 1 3.9434 -1.7334 1.8984 44 1 4.1884 -0.3819 0.6677 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000581670289.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:46:05 Heat of formation + Delta-G solvation = -141.778509 kcal Electronic energy + Delta-G solvation = -28525.379432 eV Core-core repulsion = 24570.551878 eV Total energy + Delta-G solvation = -3954.827554 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -41.65076 -39.03595 -38.59584 -38.04957 -37.28107 -36.91855 -36.13112 -34.10159 -32.54293 -29.91173 -28.46053 -27.50941 -24.67316 -23.14207 -23.04174 -22.88031 -21.58963 -20.77940 -20.41800 -19.06884 -18.79300 -18.34792 -17.97406 -16.98461 -16.91763 -16.74502 -16.55373 -16.16711 -16.00652 -15.60688 -15.36956 -14.95910 -14.55832 -14.20426 -13.78166 -13.74356 -13.47432 -13.19684 -13.12423 -13.01054 -12.94290 -12.86180 -12.70317 -12.52282 -12.41330 -12.37755 -12.28848 -12.26290 -12.12713 -11.92481 -11.71994 -11.55603 -11.07459 -10.93820 -10.89120 -10.66474 -10.55988 -9.94113 -8.19783 -6.35610 -0.63992 1.15191 1.39108 1.40814 1.50042 1.62988 2.19333 2.38993 2.82303 2.91086 3.06068 3.28890 3.34862 3.57122 3.69646 3.78099 3.91606 4.07793 4.11144 4.23966 4.34111 4.41102 4.48826 4.50210 4.54205 4.60240 4.70913 4.82221 4.92883 4.93369 4.94160 5.09950 5.16084 5.17714 5.23770 5.38022 5.40391 5.49801 5.54471 5.60957 5.70255 5.92370 6.20374 6.70935 6.99069 7.36774 8.87318 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.013167 B = 0.005019 C = 0.004484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2126.076150 B = 5577.018035 C = 6243.065391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.054 4.054 3 H 0.103 0.897 4 C 0.155 3.845 5 H 0.120 0.880 6 N -1.093 6.093 7 S 2.622 3.378 8 O -0.986 6.986 9 O -0.979 6.979 10 C -0.542 4.542 11 C 0.010 3.990 12 C -0.533 4.533 13 H 0.053 0.947 14 C 0.042 3.958 15 N -0.893 5.893 16 Si 0.938 3.062 17 H -0.274 1.274 18 H -0.274 1.274 19 H -0.268 1.268 20 C -0.196 4.196 21 C -0.139 4.139 22 C 0.468 3.532 23 O -0.530 6.530 24 O -0.496 6.496 25 C -0.144 4.144 26 C -0.162 4.162 27 C -0.196 4.196 28 H 0.052 0.948 29 H 0.089 0.911 30 H 0.061 0.939 31 H 0.428 0.572 32 H 0.112 0.888 33 H 0.122 0.878 34 H 0.265 0.735 35 H 0.095 0.905 36 H 0.088 0.912 37 H 0.070 0.930 38 H 0.080 0.920 39 H 0.424 0.576 40 H 0.123 0.877 41 H 0.098 0.902 42 H 0.109 0.891 43 H 0.101 0.899 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.362 2.762 15.305 18.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.074 4.074 3 H 0.121 0.879 4 C 0.045 3.955 5 H 0.137 0.863 6 N -0.852 5.852 7 S 2.719 3.281 8 O -0.976 6.976 9 O -0.968 6.968 10 C -0.675 4.675 11 C 0.008 3.992 12 C -0.571 4.571 13 H 0.071 0.929 14 C -0.161 4.161 15 N -0.529 5.529 16 Si 0.763 3.237 17 H -0.199 1.199 18 H -0.199 1.199 19 H -0.192 1.192 20 C -0.233 4.233 21 C -0.178 4.178 22 C 0.309 3.691 23 O -0.419 6.419 24 O -0.309 6.309 25 C -0.162 4.162 26 C -0.199 4.199 27 C -0.233 4.233 28 H 0.071 0.929 29 H 0.108 0.892 30 H 0.080 0.920 31 H 0.265 0.735 32 H 0.130 0.870 33 H 0.141 0.859 34 H 0.075 0.925 35 H 0.113 0.887 36 H 0.106 0.894 37 H 0.088 0.912 38 H 0.099 0.901 39 H 0.286 0.714 40 H 0.141 0.859 41 H 0.117 0.883 42 H 0.128 0.872 43 H 0.119 0.881 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -9.709 3.561 14.781 18.039 hybrid contribution 0.345 -1.341 -0.377 1.435 sum -9.364 2.221 14.404 17.323 Atomic orbital electron populations 1.21913 0.92661 1.02448 1.03669 1.20997 0.97648 0.99677 0.89101 0.87929 1.20604 1.01115 0.85769 0.87974 0.86255 1.55472 1.37255 1.63866 1.28621 1.04518 0.72939 0.77653 0.72980 1.93478 1.74768 1.66207 1.63183 1.93504 1.43578 1.81806 1.77954 1.29838 1.06989 1.21849 1.08802 1.18465 0.92911 1.03014 0.84821 1.20690 0.90681 0.96246 1.49447 0.92919 1.25566 1.02460 0.94507 0.93575 1.70054 1.35887 1.06030 1.40969 0.85855 0.80800 0.78061 0.79015 1.19925 1.19927 1.19239 1.23249 1.00339 0.98650 1.01048 1.22475 1.00975 0.90548 1.03767 1.24010 0.77533 0.88184 0.79399 1.90713 1.37886 1.78854 1.34469 1.84537 1.71722 1.28411 1.46192 1.22256 0.95257 1.02324 0.96396 1.23115 1.02702 0.97556 0.96546 1.23021 0.93921 1.02649 1.03730 0.92857 0.89241 0.91954 0.73459 0.86969 0.85921 0.92544 0.88685 0.89384 0.91186 0.90134 0.71437 0.85948 0.88341 0.87240 0.88100 0.90084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 8.73 71.98 0.63 -1.69 16 2 C -0.05 -1.03 2.51 -10.80 -0.03 -1.06 16 3 H 0.10 1.85 7.90 -2.39 -0.02 1.83 16 4 C 0.16 4.15 2.44 44.25 0.11 4.26 16 5 H 0.12 3.56 6.47 -2.38 -0.02 3.54 16 6 N -1.09 -32.68 4.82 -172.52 -0.83 -33.51 16 7 S 2.62 108.08 5.18 -56.49 -0.29 107.79 16 8 O -0.99 -43.52 18.08 -127.65 -2.31 -45.83 16 9 O -0.98 -46.36 17.01 -127.65 -2.17 -48.53 16 10 C -0.54 -24.13 4.73 71.98 0.34 -23.79 16 11 C 0.01 0.51 1.32 -52.93 -0.07 0.44 16 12 C -0.53 -29.83 8.14 25.60 0.21 -29.62 16 13 H 0.05 3.03 7.83 -2.91 -0.02 3.01 16 14 C 0.04 2.30 5.38 84.65 0.46 2.76 16 15 N -0.89 -49.73 12.98 21.45 0.28 -49.45 16 16 Si 0.94 43.87 29.55 68.60 2.03 45.90 16 17 H -0.27 -12.67 7.11 99.48 0.71 -11.97 16 18 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 19 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 20 C -0.20 -8.78 9.96 30.61 0.30 -8.47 16 21 C -0.14 -6.52 9.49 30.62 0.29 -6.23 16 22 C 0.47 12.46 5.86 71.24 0.42 12.88 16 23 O -0.53 -16.93 15.54 22.00 0.34 -16.58 16 24 O -0.50 -9.77 11.29 -51.42 -0.58 -10.35 16 25 C -0.14 -2.41 3.76 -10.79 -0.04 -2.45 16 26 C -0.16 -2.38 10.18 30.62 0.31 -2.06 16 27 C -0.20 -3.78 9.68 30.62 0.30 -3.48 16 28 H 0.05 0.87 7.08 -2.39 -0.02 0.85 16 29 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.06 0.96 6.73 -2.38 -0.02 0.95 16 31 H 0.43 10.48 7.28 -96.75 -0.70 9.78 16 32 H 0.11 5.28 8.07 -2.39 -0.02 5.26 16 33 H 0.12 4.99 7.43 -2.39 -0.02 4.98 16 34 H 0.27 13.98 8.32 -92.71 -0.77 13.21 16 35 H 0.09 3.85 8.14 -2.38 -0.02 3.83 16 36 H 0.09 3.87 8.14 -2.39 -0.02 3.85 16 37 H 0.07 3.47 8.14 -2.38 -0.02 3.45 16 38 H 0.08 3.51 8.14 -2.39 -0.02 3.49 16 39 H 0.42 5.07 9.10 -74.05 -0.67 4.40 16 40 H 0.12 1.86 7.33 -2.39 -0.02 1.84 16 41 H 0.10 1.37 8.05 -2.39 -0.02 1.35 16 42 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 44 H 0.08 1.86 7.59 -2.39 -0.02 1.85 16 Total: -1.00 -72.08 374.12 -0.66 -72.74 By element: Atomic # 1 Polarization: 36.70 SS G_CDS: -0.35 Total: 36.36 kcal Atomic # 6 Polarization: -61.76 SS G_CDS: 3.22 Total: -58.54 kcal Atomic # 7 Polarization: -82.41 SS G_CDS: -0.55 Total: -82.96 kcal Atomic # 8 Polarization: -116.57 SS G_CDS: -4.72 Total: -121.29 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Atomic # 16 Polarization: 108.08 SS G_CDS: -0.29 Total: 107.79 kcal Total: -72.08 -0.66 -72.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581670289.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.037 kcal (2) G-P(sol) polarization free energy of solvation -72.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds