Wall clock time and date at job start Tue Mar 31 2020 17:42:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.70548 * 2 1 4 4 C 1.53188 * 109.58917 * 120.36117 * 2 1 3 5 5 C 1.53042 * 109.31766 * 174.42185 * 4 2 1 6 6 H 1.09001 * 109.45933 * 58.63787 * 5 4 2 7 7 C 1.50691 * 109.46253 * 178.61444 * 5 4 2 8 8 O 1.20830 * 120.00250 * 359.97438 * 7 5 4 9 9 O 1.34234 * 119.99894 * 180.02562 * 7 5 4 10 10 C 1.53042 * 109.53302 * 298.63508 * 5 4 2 11 11 C 1.52760 * 109.38688 * 61.23403 * 10 5 4 12 12 N 1.46921 * 109.00882 * 305.59229 * 11 10 5 13 13 S 1.65602 * 120.62623 * 233.58215 * 12 11 10 14 14 O 1.42094 * 104.27840 * 138.18684 * 13 12 11 15 15 O 1.42096 * 104.27951 * 10.32345 * 13 12 11 16 16 C 1.81402 * 104.44838 * 254.25495 * 13 12 11 17 17 C 1.53006 * 109.47153 * 186.55478 * 16 13 12 18 18 C 1.50697 * 115.54992 * 294.33452 * 17 16 13 19 19 H 1.07998 * 120.00408 * 95.19177 * 18 17 16 20 20 C 1.37882 * 119.99626 * 275.19573 * 18 17 16 21 21 N 1.31506 * 120.00272 * 5.48519 * 20 18 17 22 22 Si 1.86804 * 119.99697 * 185.48961 * 20 18 17 23 23 H 1.48493 * 109.47242 * 269.99845 * 22 20 18 24 24 H 1.48503 * 109.46826 * 29.99621 * 22 20 18 25 25 H 1.48498 * 109.47072 * 149.99797 * 22 20 18 26 26 C 1.53000 * 117.49837 * 80.00439 * 17 16 13 27 27 C 1.52998 * 117.49764 * 148.66327 * 17 16 13 28 28 H 1.08997 * 109.47433 * 189.00476 * 1 2 3 29 29 H 1.09004 * 109.46905 * 308.99880 * 1 2 3 30 30 H 1.09001 * 109.47498 * 68.99937 * 1 2 3 31 31 H 1.09005 * 109.49539 * 294.36819 * 4 2 1 32 32 H 1.09001 * 109.49886 * 54.46309 * 4 2 1 33 33 H 0.96696 * 116.99706 * 180.02562 * 9 7 5 34 34 H 1.08997 * 109.49696 * 181.31558 * 10 5 4 35 35 H 1.09005 * 109.49676 * 301.37530 * 10 5 4 36 36 H 1.09001 * 109.51082 * 185.70141 * 11 10 5 37 37 H 1.09006 * 109.42500 * 65.42488 * 11 10 5 38 38 H 1.09000 * 109.47539 * 66.55699 * 16 13 12 39 39 H 1.09003 * 109.47275 * 306.55658 * 16 13 12 40 40 H 0.97009 * 120.00197 * 174.99518 * 21 20 18 41 41 H 1.08996 * 117.49575 * 215.00387 * 26 17 16 42 42 H 1.09001 * 117.49617 * 0.02562 * 26 17 16 43 43 H 1.09003 * 117.50284 * 359.97438 * 27 17 16 44 44 H 1.09000 * 117.49789 * 144.99574 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0436 -0.7295 1.2453 5 6 3.5675 -0.8481 1.1700 6 1 4.0062 0.1472 1.0990 7 6 4.0795 -1.5351 2.4097 8 8 3.3053 -1.8927 3.2657 9 8 5.3957 -1.7489 2.5635 10 6 3.9568 -1.6657 -0.0637 11 6 3.4643 -0.9519 -1.3212 12 7 2.0225 -0.6995 -1.1945 13 16 0.9716 -1.2001 -2.3724 14 8 -0.1382 -1.7206 -1.6539 15 8 1.7577 -2.0348 -3.2117 16 6 0.5088 0.3226 -3.2429 17 6 -0.5924 0.0144 -4.2595 18 6 -0.1913 -0.8863 -5.3991 19 1 -0.3785 -1.9483 -5.3398 20 6 0.4148 -0.3545 -6.5176 21 7 0.7407 0.9192 -6.5460 22 14 0.7728 -1.4435 -7.9926 23 1 2.1244 -2.0417 -7.8498 24 1 -0.2419 -2.5251 -8.0672 25 1 0.7205 -0.6291 -9.2333 26 6 -2.0247 -0.1052 -3.7349 27 6 -1.6095 1.1183 -4.5557 28 1 -0.3634 -1.0150 0.1608 29 1 -0.3633 0.6467 0.7987 30 1 -0.3634 0.3683 -0.9594 31 1 1.7661 -0.1669 2.1368 32 1 1.6029 -1.7254 1.2912 33 1 5.6763 -2.1935 3.3750 34 1 5.0411 -1.7697 -0.1039 35 1 3.4987 -2.6531 -0.0052 36 1 3.6502 -1.5798 -2.1926 37 1 3.9928 -0.0049 -1.4311 38 1 1.3796 0.7240 -3.7612 39 1 0.1443 1.0560 -2.5235 40 1 1.2317 1.2775 -7.3021 41 1 -2.6768 -0.8353 -4.2142 42 1 -2.1825 0.0362 -2.6657 43 1 -1.4944 2.0641 -4.0262 44 1 -1.9885 1.1932 -5.5750 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000583384780.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:42:03 Heat of formation + Delta-G solvation = -160.322091 kcal Electronic energy + Delta-G solvation = -28268.426414 eV Core-core repulsion = 24312.794749 eV Total energy + Delta-G solvation = -3955.631664 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.53436 -39.49195 -38.60681 -38.07513 -37.08793 -36.71737 -34.21098 -34.07103 -33.17117 -29.88275 -28.30907 -27.54772 -26.46114 -23.59704 -22.98913 -22.77684 -21.33236 -21.19002 -19.67674 -18.98423 -18.33456 -18.13380 -17.51508 -17.34941 -16.84383 -16.61435 -16.56183 -16.02778 -15.60306 -15.28337 -15.08962 -14.83540 -14.61765 -14.36630 -13.88531 -13.78012 -13.69700 -13.36070 -13.20216 -13.14464 -12.90447 -12.86441 -12.74575 -12.53905 -12.45631 -12.37845 -12.21250 -12.13638 -11.84959 -11.76407 -11.71059 -11.62933 -11.50219 -11.18808 -10.87911 -10.53765 -10.13126 -9.72336 -8.19231 -6.34313 -0.49573 1.20835 1.38107 1.40545 1.48966 1.93403 2.14117 2.39459 3.03300 3.07496 3.36718 3.45369 3.49505 3.66844 3.85978 3.92597 4.03010 4.10201 4.25616 4.33033 4.36780 4.48018 4.57281 4.60413 4.67094 4.71847 4.78472 4.82393 4.87291 4.90808 4.96237 5.02187 5.10957 5.22188 5.23149 5.29867 5.47929 5.56935 5.60698 5.64309 5.71430 5.80917 6.23148 6.71798 7.01857 7.38078 8.87721 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.020769 B = 0.003849 C = 0.003485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.832795 B = 7273.569795 C = 8032.605129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.152 3.848 3 H 0.113 0.887 4 C -0.110 4.110 5 C -0.076 4.076 6 H 0.145 0.855 7 C 0.490 3.510 8 O -0.551 6.551 9 O -0.508 6.508 10 C -0.118 4.118 11 C 0.108 3.892 12 N -1.004 6.004 13 S 2.618 3.382 14 O -0.983 6.983 15 O -0.997 6.997 16 C -0.551 4.551 17 C 0.012 3.988 18 C -0.535 4.535 19 H 0.045 0.955 20 C 0.043 3.957 21 N -0.891 5.891 22 Si 0.933 3.067 23 H -0.275 1.275 24 H -0.271 1.271 25 H -0.272 1.272 26 C -0.195 4.195 27 C -0.138 4.138 28 H 0.079 0.921 29 H 0.103 0.897 30 H 0.050 0.950 31 H 0.098 0.902 32 H 0.054 0.946 33 H 0.426 0.574 34 H 0.114 0.886 35 H 0.052 0.948 36 H 0.085 0.915 37 H 0.104 0.896 38 H 0.119 0.881 39 H 0.134 0.866 40 H 0.266 0.734 41 H 0.079 0.921 42 H 0.101 0.899 43 H 0.089 0.911 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.886 2.776 16.989 19.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C 0.047 3.953 3 H 0.131 0.869 4 C -0.149 4.149 5 C -0.094 4.094 6 H 0.163 0.837 7 C 0.334 3.666 8 O -0.442 6.442 9 O -0.322 6.322 10 C -0.157 4.157 11 C -0.017 4.017 12 N -0.844 5.844 13 S 2.717 3.283 14 O -0.974 6.974 15 O -0.987 6.987 16 C -0.683 4.683 17 C 0.010 3.990 18 C -0.572 4.572 19 H 0.064 0.936 20 C -0.160 4.160 21 N -0.528 5.528 22 Si 0.758 3.242 23 H -0.201 1.201 24 H -0.196 1.196 25 H -0.197 1.197 26 C -0.233 4.233 27 C -0.177 4.177 28 H 0.097 0.903 29 H 0.122 0.878 30 H 0.069 0.931 31 H 0.117 0.883 32 H 0.072 0.928 33 H 0.288 0.712 34 H 0.132 0.868 35 H 0.071 0.929 36 H 0.103 0.897 37 H 0.122 0.878 38 H 0.137 0.863 39 H 0.152 0.848 40 H 0.075 0.925 41 H 0.097 0.903 42 H 0.119 0.881 43 H 0.107 0.893 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 8.346 2.111 16.566 18.669 hybrid contribution 0.278 -0.420 -0.700 0.863 sum 8.624 1.691 15.866 18.137 Atomic orbital electron populations 1.22779 0.93823 1.05383 1.03497 1.21222 0.94148 0.96906 0.82996 0.86935 1.21838 0.92868 1.01874 0.98303 1.21080 0.96786 1.02072 0.89505 0.83709 1.23644 0.80093 0.75124 0.87734 1.90724 1.58417 1.49977 1.45098 1.84501 1.25155 1.73727 1.48775 1.21794 1.03437 0.98204 0.92281 1.21586 0.78976 1.02377 0.98742 1.57920 1.18315 1.74813 1.33330 1.04582 0.73371 0.77272 0.73035 1.93516 1.54646 1.78636 1.70559 1.93433 1.70045 1.65997 1.69266 1.29996 1.09278 1.19360 1.09709 1.18391 0.85635 1.00340 0.94663 1.20704 1.42017 0.92977 1.01547 0.93648 1.25497 0.94474 0.95965 1.00020 1.70018 1.37705 1.13045 1.31985 0.85932 0.78945 0.79522 0.79789 1.20090 1.19560 1.19707 1.23231 0.99226 1.01569 0.99241 1.22502 1.04176 0.92230 0.98782 0.90258 0.87848 0.93104 0.88311 0.92762 0.71207 0.86805 0.92879 0.89707 0.87825 0.86270 0.84839 0.92514 0.90268 0.88110 0.89295 0.91700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.80 7.64 71.98 0.55 -4.25 16 2 C 0.15 3.26 3.51 44.97 0.16 3.41 16 3 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 4 C -0.11 -2.19 3.94 30.67 0.12 -2.07 16 5 C -0.08 -1.23 2.59 -11.51 -0.03 -1.26 16 6 H 0.15 1.46 8.14 -2.39 -0.02 1.44 16 7 C 0.49 8.84 7.63 71.23 0.54 9.38 16 8 O -0.55 -13.89 16.74 21.95 0.37 -13.52 16 9 O -0.51 -6.15 13.30 -51.45 -0.68 -6.84 16 10 C -0.12 -2.20 5.28 30.53 0.16 -2.04 16 11 C 0.11 2.49 6.45 86.22 0.56 3.05 16 12 N -1.00 -28.01 3.21 -491.57 -1.58 -29.58 16 13 S 2.62 103.47 4.57 -56.49 -0.26 103.21 16 14 O -0.98 -41.19 13.91 -127.65 -1.78 -42.96 16 15 O -1.00 -47.65 15.96 -127.65 -2.04 -49.69 16 16 C -0.55 -22.22 5.65 71.98 0.41 -21.82 16 17 C 0.01 0.57 1.33 -52.93 -0.07 0.50 16 18 C -0.54 -29.71 8.23 25.60 0.21 -29.50 16 19 H 0.05 2.64 7.82 -2.91 -0.02 2.61 16 20 C 0.04 2.37 5.40 84.66 0.46 2.83 16 21 N -0.89 -48.75 12.91 21.45 0.28 -48.47 16 22 Si 0.93 43.90 29.54 68.60 2.03 45.92 16 23 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 24 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 25 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 26 C -0.20 -8.31 9.96 30.62 0.30 -8.01 16 27 C -0.14 -6.11 9.42 30.62 0.29 -5.82 16 28 H 0.08 2.37 6.34 -2.39 -0.02 2.36 16 29 H 0.10 1.80 8.14 -2.38 -0.02 1.78 16 30 H 0.05 1.35 4.54 -2.39 -0.01 1.34 16 31 H 0.10 1.66 8.07 -2.38 -0.02 1.64 16 32 H 0.05 1.39 8.11 -2.39 -0.02 1.37 16 33 H 0.43 1.83 9.10 -74.06 -0.67 1.16 16 34 H 0.11 1.55 8.08 -2.39 -0.02 1.54 16 35 H 0.05 1.21 8.14 -2.38 -0.02 1.19 16 36 H 0.08 2.38 6.56 -2.39 -0.02 2.37 16 37 H 0.10 1.71 8.14 -2.38 -0.02 1.69 16 38 H 0.12 5.11 8.14 -2.39 -0.02 5.09 16 39 H 0.13 4.31 6.32 -2.39 -0.02 4.30 16 40 H 0.27 13.78 8.32 -92.70 -0.77 13.01 16 41 H 0.08 3.42 8.14 -2.39 -0.02 3.40 16 42 H 0.10 3.73 8.14 -2.39 -0.02 3.71 16 43 H 0.09 3.47 8.14 -2.39 -0.02 3.46 16 44 H 0.06 3.12 8.14 -2.39 -0.02 3.10 16 Total: -1.00 -75.30 363.17 0.34 -74.96 By element: Atomic # 1 Polarization: 22.23 SS G_CDS: 0.34 Total: 22.58 kcal Atomic # 6 Polarization: -59.26 SS G_CDS: 3.66 Total: -55.61 kcal Atomic # 7 Polarization: -76.76 SS G_CDS: -1.30 Total: -78.06 kcal Atomic # 8 Polarization: -108.88 SS G_CDS: -4.13 Total: -113.01 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.92 kcal Atomic # 16 Polarization: 103.47 SS G_CDS: -0.26 Total: 103.21 kcal Total: -75.30 0.34 -74.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583384780.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.364 kcal (2) G-P(sol) polarization free energy of solvation -75.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds