Wall clock time and date at job start Tue Mar 31 2020 16:47:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47103 * 2 1 4 4 C 1.52998 * 109.46754 * 240.00072 * 2 1 3 5 5 O 1.45193 * 109.46990 * 120.00331 * 2 1 3 6 6 C 1.34231 * 117.00299 * 59.99730 * 5 2 1 7 7 O 1.20825 * 119.99895 * 0.02562 * 6 5 2 8 8 C 1.50703 * 119.99952 * 179.97438 * 6 5 2 9 9 H 1.08994 * 109.67891 * 4.93420 * 8 6 5 10 10 C 1.53294 * 109.70794 * 125.46802 * 8 6 5 11 11 O 1.42965 * 109.22156 * 172.04641 * 10 8 6 12 12 C 1.42966 * 114.16434 * 297.41969 * 11 10 8 13 13 C 1.52874 * 109.29962 * 62.44482 * 12 11 10 14 14 N 1.47145 * 109.68187 * 244.41282 * 8 6 5 15 15 C 1.34783 * 120.98577 * 9.68532 * 14 8 6 16 16 O 1.21276 * 119.99380 * 356.11362 * 15 14 8 17 17 C 1.50699 * 119.99966 * 176.11911 * 15 14 8 18 18 S 1.81005 * 109.46630 * 179.97438 * 17 15 14 19 19 C 1.76203 * 99.99538 * 179.97438 * 18 17 15 20 20 H 1.07999 * 120.00234 * 359.97438 * 19 18 17 21 21 C 1.38800 * 119.99382 * 180.02562 * 19 18 17 22 22 N 1.31631 * 119.99655 * 180.02562 * 21 19 18 23 23 Si 1.86801 * 120.00453 * 359.97438 * 21 19 18 24 24 H 1.48503 * 109.46901 * 90.00140 * 23 21 19 25 25 H 1.48497 * 109.47212 * 330.00400 * 23 21 19 26 26 H 1.48502 * 109.47311 * 210.00196 * 23 21 19 27 27 H 1.08997 * 109.46997 * 299.99923 * 1 2 3 28 28 H 1.09000 * 109.47038 * 60.00007 * 1 2 3 29 29 H 1.08998 * 109.47088 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46830 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.47168 * 299.99913 * 3 2 1 32 32 H 1.08997 * 109.47131 * 60.00159 * 3 2 1 33 33 H 1.08998 * 109.47672 * 300.00070 * 4 2 1 34 34 H 1.09000 * 109.47413 * 60.00150 * 4 2 1 35 35 H 1.09000 * 109.46909 * 180.02562 * 4 2 1 36 36 H 1.08996 * 109.51638 * 291.96498 * 10 8 6 37 37 H 1.08999 * 109.51569 * 52.07405 * 10 8 6 38 38 H 1.08998 * 109.51631 * 182.50595 * 12 11 10 39 39 H 1.09005 * 109.51103 * 302.60489 * 12 11 10 40 40 H 1.09003 * 109.61824 * 188.11477 * 13 12 11 41 41 H 1.09003 * 109.52231 * 67.70163 * 13 12 11 42 42 H 1.08996 * 109.47328 * 59.99766 * 17 15 14 43 43 H 1.08992 * 109.47019 * 299.99475 * 17 15 14 44 44 H 0.97006 * 119.99855 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 8 2.0140 -0.6845 1.1855 6 6 1.6533 -1.9685 1.3378 7 8 0.9566 -2.5028 0.5077 8 6 2.1182 -2.7438 2.5435 9 1 2.6588 -2.0816 3.2197 10 6 0.9094 -3.3466 3.2682 11 8 1.3682 -4.2281 4.2959 12 6 2.1141 -5.3492 3.8155 13 6 3.3800 -4.8520 3.1174 14 7 2.9989 -3.8427 2.1167 15 6 3.4389 -3.9254 0.8454 16 8 3.0538 -3.1274 0.0174 17 6 4.4094 -5.0095 0.4531 18 16 4.8062 -4.8561 -1.3063 19 6 5.9246 -6.2057 -1.4864 20 1 6.1642 -6.8258 -0.6353 21 6 6.4985 -6.4711 -2.7220 22 7 7.3336 -7.4796 -2.8567 23 14 6.0847 -5.3980 -4.1940 24 1 7.0455 -4.2681 -4.2685 25 1 4.7060 -4.8665 -4.0472 26 1 6.1739 -6.2064 -5.4366 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 3.1300 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6766 -1.7489 -1.2494 34 1 1.6766 -0.2074 -2.1392 35 1 3.1299 -0.7217 -1.2491 36 1 0.3154 -2.5478 3.7122 37 1 0.2983 -3.9023 2.5569 38 1 2.3869 -5.9910 4.6531 39 1 1.5075 -5.9134 3.1070 40 1 3.8784 -5.6871 2.6251 41 1 4.0499 -4.4056 3.8523 42 1 3.9599 -5.9847 0.6401 43 1 5.3215 -4.9109 1.0415 44 1 7.7351 -7.6649 -3.7202 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597834669.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:47:19 Heat of formation + Delta-G solvation = -149.562985 kcal Electronic energy + Delta-G solvation = -28114.146128 eV Core-core repulsion = 24158.981013 eV Total energy + Delta-G solvation = -3955.165115 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.32044 -39.77657 -38.34739 -36.70257 -34.93114 -33.96718 -32.48338 -32.21535 -29.76405 -27.77604 -27.43585 -27.15410 -25.67922 -25.36933 -22.82117 -22.08282 -19.96012 -19.15436 -17.94410 -17.41503 -17.01624 -16.79239 -16.33159 -15.95342 -15.65654 -15.39649 -15.11893 -15.00076 -14.87733 -14.14980 -14.01234 -13.79464 -13.58371 -13.49749 -13.20238 -12.83435 -12.49558 -12.44266 -12.26609 -12.07489 -11.89802 -11.74861 -11.63313 -11.32460 -11.30607 -11.25502 -11.05041 -11.01029 -10.66682 -10.54065 -10.23069 -9.90395 -9.72790 -9.41722 -9.04847 -8.79045 -8.55271 -6.97110 -6.33350 -4.05494 2.06776 2.57573 2.66983 2.81083 3.10187 3.29245 3.46734 3.48363 3.53201 4.25748 4.29386 4.44631 4.62266 4.66372 4.72615 4.78846 4.81875 4.87662 4.90826 5.01114 5.05929 5.09365 5.17984 5.33646 5.42290 5.43353 5.56680 5.60228 5.63574 5.66453 5.78160 5.87021 5.88234 6.02233 6.09078 6.10887 6.29909 6.65336 6.75291 6.78872 7.13706 7.89528 8.04158 8.24316 8.36538 9.12806 10.75847 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.011401 B = 0.004614 C = 0.003442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2455.419148 B = 6066.758648 C = 8132.927662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.123 3.877 3 C -0.139 4.139 4 C -0.174 4.174 5 O -0.352 6.352 6 C 0.485 3.515 7 O -0.482 6.482 8 C 0.119 3.881 9 H 0.106 0.894 10 C 0.063 3.937 11 O -0.371 6.371 12 C 0.043 3.957 13 C 0.076 3.924 14 N -0.614 5.614 15 C 0.530 3.470 16 O -0.483 6.483 17 C -0.117 4.117 18 S -0.136 6.136 19 C -0.523 4.523 20 H 0.088 0.912 21 C 0.098 3.902 22 N -0.879 5.879 23 Si 0.855 3.145 24 H -0.267 1.267 25 H -0.235 1.235 26 H -0.274 1.274 27 H 0.056 0.944 28 H 0.068 0.932 29 H 0.083 0.917 30 H 0.066 0.934 31 H 0.076 0.924 32 H 0.062 0.938 33 H 0.097 0.903 34 H 0.057 0.943 35 H 0.063 0.937 36 H 0.111 0.889 37 H 0.073 0.927 38 H 0.113 0.887 39 H 0.062 0.938 40 H 0.106 0.894 41 H 0.082 0.918 42 H 0.098 0.902 43 H 0.099 0.901 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.565 11.876 14.186 22.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.088 3.912 3 C -0.197 4.197 4 C -0.231 4.231 5 O -0.270 6.270 6 C 0.327 3.673 7 O -0.368 6.368 8 C 0.014 3.986 9 H 0.124 0.876 10 C -0.015 4.015 11 O -0.289 6.289 12 C -0.035 4.035 13 C -0.046 4.046 14 N -0.354 5.354 15 C 0.318 3.682 16 O -0.356 6.356 17 C -0.268 4.268 18 S 0.090 5.910 19 C -0.670 4.670 20 H 0.106 0.894 21 C -0.111 4.111 22 N -0.516 5.516 23 Si 0.680 3.320 24 H -0.192 1.192 25 H -0.159 1.159 26 H -0.199 1.199 27 H 0.075 0.925 28 H 0.087 0.913 29 H 0.102 0.898 30 H 0.085 0.915 31 H 0.094 0.906 32 H 0.081 0.919 33 H 0.116 0.884 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.129 0.871 37 H 0.091 0.909 38 H 0.131 0.869 39 H 0.080 0.920 40 H 0.124 0.876 41 H 0.101 0.899 42 H 0.116 0.884 43 H 0.117 0.883 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -13.264 12.851 12.714 22.422 hybrid contribution 0.718 -0.760 -0.117 1.053 sum -12.546 12.091 12.597 21.500 Atomic orbital electron populations 1.22480 0.94582 1.04552 1.02163 1.22110 0.93734 0.91770 0.83623 1.21842 1.02375 0.92938 1.02497 1.22399 1.02283 1.03626 0.94833 1.86428 1.70208 1.25100 1.45267 1.22175 0.78199 0.80830 0.86099 1.90581 1.36519 1.68853 1.40895 1.21382 0.94271 0.89250 0.93682 0.87643 1.22844 0.93149 0.94447 0.91097 1.87994 1.72180 1.36770 1.31920 1.23021 0.91942 0.88447 1.00054 1.22442 0.97940 0.92469 0.91782 1.48141 1.50138 1.26712 1.10455 1.20548 0.80955 0.86151 0.80541 1.90728 1.55542 1.41252 1.48101 1.23261 1.00059 0.99278 1.04171 1.84843 1.59660 1.43831 1.02623 1.22298 1.29380 1.14991 1.00346 0.89368 1.24688 0.93521 0.94646 0.98280 1.69935 1.28424 1.27778 1.25420 0.86757 0.81873 0.81028 0.82337 1.19208 1.15944 1.19874 0.92496 0.91298 0.89836 0.91495 0.90555 0.91923 0.88424 0.92376 0.91786 0.87128 0.90900 0.86929 0.91959 0.87585 0.89927 0.88419 0.88293 0.91893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.12 8.37 37.16 0.31 -1.81 16 2 C 0.12 1.65 1.13 -90.62 -0.10 1.55 16 3 C -0.14 -1.45 8.85 37.16 0.33 -1.12 16 4 C -0.17 -2.76 7.51 37.16 0.28 -2.48 16 5 O -0.35 -5.21 9.89 -41.64 -0.41 -5.63 16 6 C 0.49 7.38 3.90 36.01 0.14 7.52 16 7 O -0.48 -8.51 10.46 -26.85 -0.28 -8.79 16 8 C 0.12 1.49 3.54 -68.58 -0.24 1.25 16 9 H 0.11 1.15 8.14 -51.93 -0.42 0.73 16 10 C 0.06 0.65 6.24 37.31 0.23 0.88 16 11 O -0.37 -3.76 10.74 -35.23 -0.38 -4.14 16 12 C 0.04 0.37 6.97 37.09 0.26 0.63 16 13 C 0.08 0.75 6.50 -3.75 -0.02 0.72 16 14 N -0.61 -8.34 3.03 -166.32 -0.50 -8.84 16 15 C 0.53 9.41 7.58 -10.98 -0.08 9.32 16 16 O -0.48 -9.95 9.76 -21.36 -0.21 -10.16 16 17 C -0.12 -2.22 4.59 36.01 0.17 -2.05 16 18 S -0.14 -3.38 18.55 -107.50 -1.99 -5.38 16 19 C -0.52 -14.80 10.04 30.94 0.31 -14.49 16 20 H 0.09 2.59 8.03 -52.49 -0.42 2.17 16 21 C 0.10 2.82 5.50 -17.43 -0.10 2.73 16 22 N -0.88 -26.26 13.97 55.49 0.78 -25.49 16 23 Si 0.86 21.66 27.74 -169.99 -4.71 16.95 16 24 H -0.27 -6.69 7.11 56.52 0.40 -6.28 16 25 H -0.24 -5.98 6.74 56.52 0.38 -5.60 16 26 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.08 1.16 5.89 -51.93 -0.31 0.85 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.10 1.87 4.97 -51.93 -0.26 1.62 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.11 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.07 0.84 7.82 -51.93 -0.41 0.44 16 38 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.11 1.00 6.07 -51.93 -0.32 0.68 16 41 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 42 H 0.10 1.71 7.49 -51.92 -0.39 1.32 16 43 H 0.10 1.73 8.13 -51.92 -0.42 1.31 16 44 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 360.22 15.07 5.43 5.43 Total: -1.00 -34.41 360.22 -7.56 -41.97 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -6.75 Total: 1.44 kcal Atomic # 6 Polarization: 1.16 SS G_CDS: 1.48 Total: 2.64 kcal Atomic # 7 Polarization: -34.60 SS G_CDS: 0.27 Total: -34.33 kcal Atomic # 8 Polarization: -27.44 SS G_CDS: -1.28 Total: -28.72 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.71 Total: 16.95 kcal Atomic # 16 Polarization: -3.38 SS G_CDS: -1.99 Total: -5.38 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -34.41 -7.56 -41.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597834669.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.596 kcal (2) G-P(sol) polarization free energy of solvation -34.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds