Wall clock time and date at job start Tue Mar 31 2020 15:55:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34232 * 116.99686 * 2 1 4 4 O 1.20827 * 120.00370 * 0.02562 * 3 2 1 5 5 C 1.50703 * 119.99838 * 180.02562 * 3 2 1 6 6 N 1.46502 * 109.47148 * 180.02562 * 5 3 2 7 7 C 1.37097 * 119.99814 * 263.99099 * 6 5 3 8 8 H 1.07997 * 119.99420 * 197.01237 * 7 6 5 9 9 C 1.38948 * 120.00225 * 17.00779 * 7 6 5 10 10 N 1.31412 * 119.99632 * 21.25563 * 9 7 6 11 11 Si 1.86795 * 120.00227 * 201.26083 * 9 7 6 12 12 H 1.48500 * 109.47422 * 89.99433 * 11 9 7 13 13 H 1.48496 * 109.47339 * 210.00125 * 11 9 7 14 14 H 1.48504 * 109.46809 * 329.99662 * 11 9 7 15 15 C 1.34776 * 120.00001 * 83.98748 * 6 5 3 16 16 O 1.21290 * 120.00214 * 0.02562 * 15 6 5 17 17 C 1.50700 * 119.99952 * 180.02562 * 15 6 5 18 18 C 1.50703 * 109.47094 * 180.02562 * 17 15 6 19 19 C 1.33998 * 126.90292 * 265.02240 * 18 17 15 20 20 O 1.34454 * 110.14934 * 179.97438 * 19 18 17 21 21 C 1.34803 * 110.88941 * 359.97438 * 20 19 18 22 22 C 1.38942 * 133.49078 * 179.97438 * 21 20 19 23 23 C 1.37850 * 119.81432 * 180.02562 * 22 21 20 24 24 C 1.38742 * 120.69101 * 359.97438 * 23 22 21 25 25 C 1.50695 * 119.79599 * 179.97438 * 24 23 22 26 26 C 1.36742 * 120.40956 * 0.22981 * 24 23 22 27 27 C 1.39404 * 119.72077 * 359.55195 * 26 24 23 28 28 H 1.09007 * 109.47039 * 299.99778 * 1 2 3 29 29 H 1.09000 * 109.47534 * 59.99876 * 1 2 3 30 30 H 1.09000 * 109.46826 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47337 * 59.99784 * 5 3 2 32 32 H 1.09000 * 109.46679 * 299.99590 * 5 3 2 33 33 H 0.97001 * 119.99600 * 180.02562 * 10 9 7 34 34 H 1.08995 * 109.47178 * 59.99911 * 17 15 6 35 35 H 1.09002 * 109.47180 * 299.99955 * 17 15 6 36 36 H 1.07997 * 124.92396 * 359.94067 * 19 18 17 37 37 H 1.08003 * 120.09854 * 0.02562 * 22 21 20 38 38 H 1.08000 * 119.65663 * 180.02562 * 23 22 21 39 39 H 1.09002 * 109.46942 * 90.00388 * 25 24 23 40 40 H 1.08996 * 109.47119 * 210.00111 * 25 24 23 41 41 H 1.08994 * 109.47234 * 330.00581 * 25 24 23 42 42 H 1.07999 * 120.13937 * 179.70827 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2750 -0.0006 6 7 3.9816 2.6799 0.0002 7 6 4.2947 3.3027 -1.1804 8 1 4.8539 4.2266 -1.1716 9 6 3.8926 2.7453 -2.3880 10 7 2.8929 1.8928 -2.4176 11 14 4.7731 3.2075 -3.9692 12 1 5.9032 2.2718 -4.1982 13 1 3.8230 3.1242 -5.1074 14 1 5.2932 4.5941 -3.8590 15 6 4.0559 3.3600 1.1613 16 8 3.7794 2.8089 2.2058 17 6 4.4826 4.8053 1.1620 18 6 4.4837 5.3281 2.5755 19 6 3.4938 5.9911 3.1888 20 8 3.8527 6.2984 4.4476 21 6 5.0951 5.8497 4.7164 22 6 5.9100 5.9064 5.8403 23 6 7.1662 5.3397 5.8054 24 6 7.6278 4.7109 4.6580 25 6 9.0046 4.0987 4.6419 26 6 6.8430 4.6479 3.5399 27 6 5.5680 5.2112 3.5577 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 3.9557 0.7811 -0.8907 32 1 3.9563 0.7807 0.8892 33 1 2.6125 1.5034 -3.2606 34 1 3.7879 5.3895 0.5587 35 1 5.4857 4.8882 0.7436 36 1 2.5455 6.2426 2.7374 37 1 5.5604 6.3931 6.7388 38 1 7.7973 5.3849 6.6806 39 1 8.9444 3.0604 4.9683 40 1 9.4083 4.1387 3.6302 41 1 9.6571 4.6540 5.3156 42 1 7.2086 4.1615 2.6476 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599538265.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:55:02 Heat of formation + Delta-G solvation = -99.734903 kcal Electronic energy + Delta-G solvation = -28459.374123 eV Core-core repulsion = 24370.925765 eV Total energy + Delta-G solvation = -4088.448358 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.37315 -41.33586 -40.11337 -39.12452 -37.33195 -36.53540 -34.81761 -33.49936 -33.02153 -31.44320 -30.36956 -28.73407 -27.73401 -27.56444 -26.34611 -23.95136 -22.51748 -22.42967 -21.41137 -20.79224 -18.96127 -18.47899 -18.17572 -17.99879 -17.72269 -17.28927 -17.06703 -16.87958 -16.30289 -16.08680 -15.92886 -15.60343 -15.06138 -14.81569 -14.55977 -14.42504 -14.30116 -14.23061 -13.81786 -13.48568 -13.38924 -13.10558 -13.01473 -12.87898 -12.78487 -12.55327 -12.51555 -12.42189 -12.36889 -12.06706 -11.73187 -11.59467 -11.52417 -11.02634 -10.93479 -10.44038 -9.89404 -9.34090 -9.05190 -8.38530 -5.94000 0.01673 0.41027 1.35632 1.43399 1.51268 1.61635 1.69224 1.79224 1.90229 2.24011 2.34108 2.73104 2.94782 3.13855 3.53978 3.68309 3.96048 4.03167 4.16916 4.22901 4.32918 4.35753 4.38997 4.40842 4.43901 4.55170 4.57854 4.64356 4.67817 4.72058 4.75705 4.89085 4.91741 5.00661 5.20999 5.32539 5.33350 5.42062 5.51878 5.61580 5.65594 5.71664 5.79601 6.23663 6.32602 7.07086 7.19634 7.47810 7.89101 8.69081 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.012436 B = 0.003788 C = 0.003364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2251.053461 B = 7389.772146 C = 8322.586707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.378 6.378 3 C 0.486 3.514 4 O -0.536 6.536 5 C 0.154 3.846 6 N -0.440 5.440 7 C -0.354 4.354 8 H 0.119 0.881 9 C -0.002 4.002 10 N -0.896 5.896 11 Si 0.995 3.005 12 H -0.269 1.269 13 H -0.292 1.292 14 H -0.258 1.258 15 C 0.463 3.537 16 O -0.626 6.626 17 C -0.039 4.039 18 C -0.168 4.168 19 C 0.005 3.995 20 O -0.202 6.202 21 C 0.015 3.985 22 C -0.108 4.108 23 C -0.093 4.093 24 C -0.105 4.105 25 C -0.107 4.107 26 C -0.092 4.092 27 C -0.132 4.132 28 H 0.049 0.951 29 H 0.046 0.954 30 H 0.134 0.866 31 H 0.121 0.879 32 H 0.086 0.914 33 H 0.272 0.728 34 H 0.103 0.897 35 H 0.104 0.896 36 H 0.227 0.773 37 H 0.156 0.844 38 H 0.172 0.828 39 H 0.074 0.926 40 H 0.067 0.933 41 H 0.091 0.909 42 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.755 3.471 8.522 12.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.295 6.295 3 C 0.329 3.671 4 O -0.424 6.424 5 C 0.028 3.972 6 N -0.158 5.158 7 C -0.481 4.481 8 H 0.136 0.864 9 C -0.204 4.204 10 N -0.535 5.535 11 Si 0.819 3.181 12 H -0.195 1.195 13 H -0.218 1.218 14 H -0.182 1.182 15 C 0.254 3.746 16 O -0.513 6.513 17 C -0.079 4.079 18 C -0.170 4.170 19 C -0.060 4.060 20 O -0.104 6.104 21 C -0.032 4.032 22 C -0.126 4.126 23 C -0.110 4.110 24 C -0.105 4.105 25 C -0.163 4.163 26 C -0.111 4.111 27 C -0.133 4.133 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.152 0.848 31 H 0.139 0.861 32 H 0.103 0.897 33 H 0.082 0.918 34 H 0.121 0.879 35 H 0.123 0.877 36 H 0.243 0.757 37 H 0.174 0.826 38 H 0.190 0.810 39 H 0.093 0.907 40 H 0.086 0.914 41 H 0.110 0.890 42 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 7.135 3.523 9.063 12.061 hybrid contribution -0.740 -0.075 -1.495 1.669 sum 6.396 3.448 7.568 10.492 Atomic orbital electron populations 1.23293 0.76183 1.04879 1.01177 1.86425 1.24149 1.33866 1.85049 1.24091 0.92637 0.80780 0.69557 1.90468 1.67321 1.37650 1.46953 1.20494 0.87106 0.86056 1.03500 1.43637 1.57354 1.08241 1.06619 1.20071 1.34821 1.10827 0.82349 0.86377 1.26092 0.94925 0.96908 1.02490 1.69962 1.23375 1.31621 1.28517 0.84890 0.77628 0.79411 0.76194 1.19458 1.21807 1.18183 1.20759 0.81472 0.89336 0.83036 1.90523 1.56411 1.71253 1.33108 1.19656 1.04119 0.92019 0.92092 1.20829 0.94951 1.04318 0.96872 1.24098 1.00082 1.00321 0.81475 1.83933 1.29375 1.66784 1.30344 1.20124 0.84962 1.00760 0.97340 1.20314 0.93271 1.03570 0.95469 1.21227 0.94494 0.96543 0.98760 1.19914 0.98089 0.99508 0.92974 1.20802 0.90919 1.00947 1.03656 1.20345 0.91959 0.99093 0.99653 1.20028 0.96379 1.02714 0.94147 0.93218 0.93508 0.84765 0.86091 0.89651 0.91848 0.87903 0.87744 0.75684 0.82638 0.81020 0.90689 0.91380 0.89026 0.86317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.32 10.56 113.37 1.20 2.51 16 2 O -0.38 -16.55 10.57 -51.44 -0.54 -17.09 16 3 C 0.49 24.76 6.13 71.24 0.44 25.20 16 4 O -0.54 -30.53 15.76 21.96 0.35 -30.18 16 5 C 0.15 7.58 5.14 85.63 0.44 8.02 16 6 N -0.44 -22.09 2.18 -639.61 -1.39 -23.48 16 7 C -0.35 -17.19 9.14 84.04 0.77 -16.42 16 8 H 0.12 5.25 6.56 -2.91 -0.02 5.23 16 9 C 0.00 -0.10 4.88 84.93 0.41 0.31 16 10 N -0.90 -46.05 9.27 21.66 0.20 -45.85 16 11 Si 0.99 37.95 29.60 68.60 2.03 39.98 16 12 H -0.27 -9.93 7.11 99.48 0.71 -9.23 16 13 H -0.29 -11.42 7.11 99.48 0.71 -10.71 16 14 H -0.26 -9.31 7.11 99.48 0.71 -8.61 16 15 C 0.46 22.85 7.41 87.66 0.65 23.50 16 16 O -0.63 -34.41 15.71 -3.06 -0.05 -34.45 16 17 C -0.04 -1.59 4.70 29.10 0.14 -1.45 16 18 C -0.17 -6.53 4.85 -18.59 -0.09 -6.62 16 19 C 0.00 0.16 11.89 66.85 0.79 0.96 16 20 O -0.20 -7.12 10.58 -8.92 -0.09 -7.21 16 21 C 0.01 0.51 7.42 22.99 0.17 0.68 16 22 C -0.11 -2.78 10.07 22.35 0.23 -2.56 16 23 C -0.09 -2.02 9.66 22.30 0.22 -1.80 16 24 C -0.10 -2.62 5.85 -20.10 -0.12 -2.74 16 25 C -0.11 -1.86 10.00 71.23 0.71 -1.15 16 26 C -0.09 -3.01 9.68 22.20 0.21 -2.79 16 27 C -0.13 -4.89 6.38 -20.22 -0.13 -5.02 16 28 H 0.05 1.71 8.13 -2.38 -0.02 1.69 16 29 H 0.05 1.69 8.13 -2.39 -0.02 1.67 16 30 H 0.13 3.27 8.14 -2.39 -0.02 3.25 16 31 H 0.12 5.87 6.39 -2.39 -0.02 5.86 16 32 H 0.09 4.01 7.61 -2.39 -0.02 3.99 16 33 H 0.27 13.36 8.31 -92.71 -0.77 12.59 16 34 H 0.10 3.97 8.10 -2.39 -0.02 3.95 16 35 H 0.10 3.84 7.69 -2.39 -0.02 3.82 16 36 H 0.23 6.49 8.06 -2.91 -0.02 6.46 16 37 H 0.16 3.01 8.06 -2.91 -0.02 2.99 16 38 H 0.17 2.24 8.06 -2.91 -0.02 2.22 16 39 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.07 1.17 8.07 -2.39 -0.02 1.15 16 41 H 0.09 1.10 8.08 -2.39 -0.02 1.09 16 42 H 0.12 3.82 8.06 -2.91 -0.02 3.80 16 Total: -1.00 -72.81 364.31 7.59 -65.22 By element: Atomic # 1 Polarization: 31.39 SS G_CDS: 1.05 Total: 32.44 kcal Atomic # 6 Polarization: 14.59 SS G_CDS: 6.04 Total: 20.62 kcal Atomic # 7 Polarization: -68.14 SS G_CDS: -1.19 Total: -69.33 kcal Atomic # 8 Polarization: -88.60 SS G_CDS: -0.34 Total: -88.94 kcal Atomic # 14 Polarization: 37.95 SS G_CDS: 2.03 Total: 39.98 kcal Total: -72.81 7.59 -65.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599538265.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.512 kcal (2) G-P(sol) polarization free energy of solvation -72.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds