Wall clock time and date at job start Tue Mar 31 2020 17:42:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.70227 * 2 1 4 4 C 1.52765 * 109.50978 * 239.88255 * 2 1 3 5 5 C 1.53038 * 109.38420 * 185.70794 * 4 2 1 6 6 H 1.09004 * 109.44505 * 301.22744 * 5 4 2 7 7 C 1.50701 * 109.46103 * 181.26062 * 5 4 2 8 8 O 1.20827 * 120.00090 * 359.93044 * 7 5 4 9 9 O 1.34228 * 119.99669 * 179.97438 * 7 5 4 10 10 C 1.53043 * 109.54125 * 61.23783 * 5 4 2 11 11 C 1.53192 * 109.31158 * 298.63818 * 10 5 4 12 12 N 1.46928 * 109.58475 * 120.35716 * 2 1 3 13 13 S 1.65601 * 120.63306 * 353.41754 * 12 2 1 14 14 O 1.42094 * 104.27701 * 172.98880 * 13 12 2 15 15 O 1.42098 * 104.27177 * 45.13043 * 13 12 2 16 16 C 1.81399 * 104.44838 * 289.06049 * 13 12 2 17 17 C 1.52997 * 109.47222 * 171.13514 * 16 13 12 18 18 C 1.50709 * 115.54768 * 54.30111 * 17 16 13 19 19 H 1.07999 * 119.99468 * 264.54314 * 18 17 16 20 20 C 1.37871 * 119.99869 * 84.53295 * 18 17 16 21 21 N 1.31513 * 120.00584 * 1.93905 * 20 18 17 22 22 Si 1.86807 * 119.99812 * 181.92943 * 20 18 17 23 23 H 1.48506 * 109.46690 * 60.00761 * 22 20 18 24 24 H 1.48503 * 109.47180 * 180.02562 * 22 20 18 25 25 H 1.48495 * 109.47142 * 300.00621 * 22 20 18 26 26 C 1.52997 * 117.50192 * 268.63307 * 17 16 13 27 27 C 1.52998 * 117.50406 * 199.96794 * 17 16 13 28 28 H 1.09003 * 109.47545 * 286.37156 * 1 2 3 29 29 H 1.08996 * 109.47090 * 46.37612 * 1 2 3 30 30 H 1.08999 * 109.47060 * 166.37222 * 1 2 3 31 31 H 1.08998 * 109.56282 * 65.66732 * 4 2 1 32 32 H 1.09003 * 109.36004 * 305.61599 * 4 2 1 33 33 H 0.96705 * 116.99841 * 180.02562 * 9 7 5 34 34 H 1.08996 * 109.49940 * 178.68374 * 10 5 4 35 35 H 1.08998 * 109.51986 * 58.60156 * 10 5 4 36 36 H 1.08996 * 109.58731 * 294.84711 * 11 10 5 37 37 H 1.09002 * 109.70462 * 174.48915 * 11 10 5 38 38 H 1.08999 * 109.47194 * 291.14009 * 16 13 12 39 39 H 1.09006 * 109.47108 * 51.13826 * 16 13 12 40 40 H 0.96994 * 120.00756 * 185.01423 * 21 20 18 41 41 H 1.08998 * 117.49882 * 359.97438 * 26 17 16 42 42 H 1.09000 * 117.50322 * 145.01911 * 26 17 16 43 43 H 1.09000 * 117.50005 * 214.98326 * 27 17 16 44 44 H 1.09007 * 117.49562 * 359.97438 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0402 -0.7225 -1.2455 5 6 3.5638 -0.8462 -1.1727 6 1 4.0055 0.1476 -1.0995 7 6 4.0719 -1.5312 -2.4151 8 8 3.2953 -1.8853 -3.2703 9 8 5.3872 -1.7488 -2.5712 10 6 3.9523 -1.6687 0.0581 11 6 3.4644 -0.9519 1.3210 12 7 2.0225 -0.6996 1.1945 13 16 0.9717 -1.2002 2.3724 14 8 1.7772 -1.9652 3.2585 15 8 -0.0995 -1.7980 1.6553 16 6 0.4248 0.3332 3.1725 17 6 -0.7208 0.0240 4.1384 18 6 -0.4343 -1.0394 5.1673 19 1 -0.7309 -2.0616 4.9842 20 6 0.2064 -0.7072 6.3420 21 7 0.5336 0.5439 6.5816 22 14 0.6097 -2.0341 7.5935 23 1 1.5016 -3.0459 6.9721 24 1 1.2928 -1.4219 8.7613 25 1 -0.6452 -2.6892 8.0421 26 6 -2.1477 0.1139 3.5939 27 6 -1.6261 1.1847 4.5554 28 1 -0.3634 0.2897 0.9860 29 1 -0.3633 0.7090 -0.7439 30 1 -0.3633 -0.9987 -0.2421 31 1 1.7632 -0.1566 -2.1349 32 1 1.5963 -1.7169 -1.2937 33 1 5.6655 -2.1912 -3.3849 34 1 5.0363 -1.7762 0.0965 35 1 3.4909 -2.6544 -0.0020 36 1 3.9928 -0.0050 1.4310 37 1 3.6506 -1.5777 2.1939 38 1 1.2564 0.7720 3.7238 39 1 0.0806 1.0361 2.4139 40 1 1.0481 0.7677 7.3727 41 1 -2.2704 0.3937 2.5476 42 1 -2.8795 -0.5957 3.9800 43 1 -2.0149 1.1790 5.5737 44 1 -1.4053 2.1688 4.1419 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600894028.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:42:10 Heat of formation + Delta-G solvation = -137.063236 kcal Electronic energy + Delta-G solvation = -28338.852776 eV Core-core repulsion = 24384.229691 eV Total energy + Delta-G solvation = -3954.623085 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.73955 -38.54789 -36.83462 -36.40525 -36.34591 -35.03321 -33.26245 -32.17747 -32.04819 -28.33409 -27.27861 -25.81392 -25.27049 -22.67846 -21.80713 -21.19331 -20.35638 -19.48373 -18.32865 -18.13480 -16.96106 -16.65687 -16.43851 -16.10966 -15.73393 -15.14738 -14.89436 -14.59488 -14.31706 -13.89771 -13.82394 -13.72659 -13.49226 -13.10160 -12.58503 -12.47325 -12.38413 -12.06046 -11.83476 -11.77427 -11.60997 -11.27486 -11.16369 -11.12818 -11.02185 -10.88697 -10.88392 -10.75811 -10.67089 -10.51776 -10.43158 -10.16379 -10.08252 -9.65798 -9.06502 -8.84656 -8.52663 -8.07895 -6.15374 -4.29110 1.04708 1.97840 2.78267 3.31336 3.33831 3.35549 3.44917 4.34886 4.38714 4.51637 4.57452 4.73724 4.84430 4.90505 5.01567 5.11084 5.13556 5.23529 5.24996 5.34562 5.44191 5.53397 5.62063 5.64490 5.74704 5.85195 5.91732 5.96668 5.97873 6.13569 6.22398 6.27304 6.31226 6.36093 6.55279 6.61951 6.72000 6.86523 6.99351 7.20970 7.43520 7.65851 7.77438 8.17828 8.77769 9.45329 10.92041 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.020364 B = 0.003968 C = 0.003569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.614354 B = 7054.189906 C = 7844.545610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.156 3.844 3 H 0.074 0.926 4 C -0.113 4.113 5 C -0.077 4.077 6 H 0.112 0.888 7 C 0.483 3.517 8 O -0.514 6.514 9 O -0.516 6.516 10 C -0.124 4.124 11 C 0.117 3.883 12 N -1.012 6.012 13 S 2.614 3.386 14 O -0.950 6.950 15 O -0.965 6.965 16 C -0.559 4.559 17 C 0.044 3.956 18 C -0.526 4.526 19 H 0.067 0.933 20 C 0.087 3.913 21 N -0.873 5.873 22 Si 0.887 3.113 23 H -0.266 1.266 24 H -0.285 1.285 25 H -0.273 1.273 26 C -0.205 4.205 27 C -0.138 4.138 28 H 0.065 0.935 29 H 0.072 0.928 30 H 0.099 0.901 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.408 0.592 34 H 0.087 0.913 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.108 0.892 38 H 0.129 0.871 39 H 0.101 0.899 40 H 0.264 0.736 41 H 0.071 0.929 42 H 0.085 0.915 43 H 0.088 0.912 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.150 2.005 -15.168 17.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C 0.050 3.950 3 H 0.092 0.908 4 C -0.152 4.152 5 C -0.096 4.096 6 H 0.129 0.871 7 C 0.325 3.675 8 O -0.402 6.402 9 O -0.328 6.328 10 C -0.163 4.163 11 C -0.009 4.009 12 N -0.849 5.849 13 S 2.713 3.287 14 O -0.941 6.941 15 O -0.956 6.956 16 C -0.692 4.692 17 C 0.042 3.958 18 C -0.563 4.563 19 H 0.085 0.915 20 C -0.118 4.118 21 N -0.508 5.508 22 Si 0.714 3.286 23 H -0.191 1.191 24 H -0.210 1.210 25 H -0.199 1.199 26 C -0.242 4.242 27 C -0.177 4.177 28 H 0.084 0.916 29 H 0.091 0.909 30 H 0.118 0.882 31 H 0.100 0.900 32 H 0.100 0.900 33 H 0.266 0.734 34 H 0.106 0.894 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.126 0.874 38 H 0.147 0.853 39 H 0.119 0.881 40 H 0.074 0.926 41 H 0.089 0.911 42 H 0.104 0.896 43 H 0.106 0.894 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 7.645 1.321 -14.698 16.620 hybrid contribution 0.624 -0.029 0.137 0.639 sum 8.268 1.292 -14.561 16.795 Atomic orbital electron populations 1.22744 0.92977 1.05803 1.03466 1.20790 0.94635 0.95320 0.84258 0.90758 1.21829 0.91806 1.03312 0.98215 1.21063 0.97730 1.00581 0.90257 0.87059 1.23634 0.79685 0.75932 0.88226 1.90724 1.57172 1.48428 1.43873 1.84552 1.26851 1.74048 1.47353 1.21911 1.02126 0.99357 0.92886 1.21409 0.80247 1.00733 0.98465 1.58361 1.17957 1.74616 1.33942 1.05011 0.73439 0.77518 0.72684 1.93493 1.68058 1.67600 1.64915 1.93519 1.55926 1.75080 1.71052 1.30151 1.10833 1.18692 1.09508 1.18223 0.84147 0.98728 0.94752 1.20521 1.41031 0.93430 1.01291 0.91528 1.24925 0.94259 0.95295 0.97362 1.69982 1.36353 1.16752 1.27686 0.86698 0.79185 0.82404 0.80348 1.19056 1.21025 1.19868 1.23146 0.99832 1.04027 0.97219 1.22524 1.04613 0.92057 0.98478 0.91639 0.90871 0.88243 0.89966 0.89973 0.73373 0.89408 0.90750 0.91251 0.87392 0.85320 0.88069 0.92634 0.91081 0.89643 0.89373 0.91700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.57 7.72 37.16 0.29 -2.29 16 2 C 0.16 1.91 3.49 -67.82 -0.24 1.68 16 3 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 4 C -0.11 -1.27 3.90 -26.83 -0.10 -1.38 16 5 C -0.08 -0.76 2.59 -91.73 -0.24 -1.00 16 6 H 0.11 0.86 8.14 -51.93 -0.42 0.43 16 7 C 0.48 5.01 7.63 36.01 0.27 5.28 16 8 O -0.51 -6.91 16.74 -18.75 -0.31 -7.22 16 9 O -0.52 -3.97 13.30 -39.25 -0.52 -4.49 16 10 C -0.12 -1.30 5.30 -26.61 -0.14 -1.44 16 11 C 0.12 1.47 6.49 -3.71 -0.02 1.44 16 12 N -1.01 -15.05 3.20 -106.70 -0.34 -15.40 16 13 S 2.61 52.59 4.29 -107.50 -0.46 52.13 16 14 O -0.95 -22.40 15.72 -57.54 -0.90 -23.31 16 15 O -0.97 -20.73 14.34 -57.54 -0.83 -21.56 16 16 C -0.56 -11.46 5.61 37.16 0.21 -11.25 16 17 C 0.04 1.05 1.52 -155.66 -0.24 0.81 16 18 C -0.53 -14.32 7.68 -34.44 -0.26 -14.59 16 19 H 0.07 1.86 7.81 -52.49 -0.41 1.45 16 20 C 0.09 2.38 5.43 -17.82 -0.10 2.28 16 21 N -0.87 -23.91 12.73 55.43 0.71 -23.20 16 22 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 23 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 24 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 25 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 26 C -0.21 -4.41 9.92 -26.69 -0.26 -4.67 16 27 C -0.14 -3.11 9.27 -26.69 -0.25 -3.35 16 28 H 0.06 0.97 3.90 -51.93 -0.20 0.77 16 29 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.10 1.51 6.62 -51.93 -0.34 1.17 16 31 H 0.08 0.82 8.07 -51.93 -0.42 0.40 16 32 H 0.08 1.09 8.05 -51.93 -0.42 0.67 16 33 H 0.41 1.49 9.10 45.56 0.41 1.90 16 34 H 0.09 0.74 8.08 -51.93 -0.42 0.33 16 35 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.11 1.53 6.54 -51.93 -0.34 1.19 16 38 H 0.13 2.73 8.14 -51.92 -0.42 2.31 16 39 H 0.10 1.72 6.12 -51.92 -0.32 1.40 16 40 H 0.26 6.91 8.32 -40.82 -0.34 6.57 16 41 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 42 H 0.09 1.84 8.14 -51.93 -0.42 1.41 16 43 H 0.09 2.13 8.14 -51.93 -0.42 1.71 16 44 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 LS Contribution 361.76 15.07 5.45 5.45 Total: -1.00 -34.08 361.76 -9.14 -43.21 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: -5.82 Total: 6.40 kcal Atomic # 6 Polarization: -27.38 SS G_CDS: -1.08 Total: -28.47 kcal Atomic # 7 Polarization: -38.96 SS G_CDS: 0.36 Total: -38.60 kcal Atomic # 8 Polarization: -54.01 SS G_CDS: -2.57 Total: -56.58 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: 52.59 SS G_CDS: -0.46 Total: 52.13 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.08 -9.14 -43.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600894028.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.853 kcal (2) G-P(sol) polarization free energy of solvation -34.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds