Wall clock time and date at job start Tue Mar 31 2020 17:42:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.70227 * 2 1 4 4 C 1.52765 * 109.50978 * 239.88255 * 2 1 3 5 5 C 1.53038 * 109.38420 * 185.70794 * 4 2 1 6 6 H 1.09004 * 109.44505 * 301.22744 * 5 4 2 7 7 C 1.50701 * 109.46103 * 181.26062 * 5 4 2 8 8 O 1.20827 * 120.00090 * 359.93044 * 7 5 4 9 9 O 1.34228 * 119.99669 * 179.97438 * 7 5 4 10 10 C 1.53043 * 109.54125 * 61.23783 * 5 4 2 11 11 C 1.53192 * 109.31158 * 298.63818 * 10 5 4 12 12 N 1.46928 * 109.58475 * 120.35716 * 2 1 3 13 13 S 1.65601 * 120.63306 * 353.41754 * 12 2 1 14 14 O 1.42094 * 104.27701 * 172.98880 * 13 12 2 15 15 O 1.42098 * 104.27177 * 45.13043 * 13 12 2 16 16 C 1.81399 * 104.44838 * 289.06049 * 13 12 2 17 17 C 1.52997 * 109.47222 * 171.13514 * 16 13 12 18 18 C 1.50709 * 115.54768 * 54.30111 * 17 16 13 19 19 H 1.07999 * 119.99468 * 264.54314 * 18 17 16 20 20 C 1.37871 * 119.99869 * 84.53295 * 18 17 16 21 21 N 1.31513 * 120.00584 * 1.93905 * 20 18 17 22 22 Si 1.86807 * 119.99812 * 181.92943 * 20 18 17 23 23 H 1.48506 * 109.46690 * 60.00761 * 22 20 18 24 24 H 1.48503 * 109.47180 * 180.02562 * 22 20 18 25 25 H 1.48495 * 109.47142 * 300.00621 * 22 20 18 26 26 C 1.52997 * 117.50192 * 268.63307 * 17 16 13 27 27 C 1.52998 * 117.50406 * 199.96794 * 17 16 13 28 28 H 1.09003 * 109.47545 * 286.37156 * 1 2 3 29 29 H 1.08996 * 109.47090 * 46.37612 * 1 2 3 30 30 H 1.08999 * 109.47060 * 166.37222 * 1 2 3 31 31 H 1.08998 * 109.56282 * 65.66732 * 4 2 1 32 32 H 1.09003 * 109.36004 * 305.61599 * 4 2 1 33 33 H 0.96705 * 116.99841 * 180.02562 * 9 7 5 34 34 H 1.08996 * 109.49940 * 178.68374 * 10 5 4 35 35 H 1.08998 * 109.51986 * 58.60156 * 10 5 4 36 36 H 1.08996 * 109.58731 * 294.84711 * 11 10 5 37 37 H 1.09002 * 109.70462 * 174.48915 * 11 10 5 38 38 H 1.08999 * 109.47194 * 291.14009 * 16 13 12 39 39 H 1.09006 * 109.47108 * 51.13826 * 16 13 12 40 40 H 0.96994 * 120.00756 * 185.01423 * 21 20 18 41 41 H 1.08998 * 117.49882 * 359.97438 * 26 17 16 42 42 H 1.09000 * 117.50322 * 145.01911 * 26 17 16 43 43 H 1.09000 * 117.50005 * 214.98326 * 27 17 16 44 44 H 1.09007 * 117.49562 * 359.97438 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0402 -0.7225 -1.2455 5 6 3.5638 -0.8462 -1.1727 6 1 4.0055 0.1476 -1.0995 7 6 4.0719 -1.5312 -2.4151 8 8 3.2953 -1.8853 -3.2703 9 8 5.3872 -1.7488 -2.5712 10 6 3.9523 -1.6687 0.0581 11 6 3.4644 -0.9519 1.3210 12 7 2.0225 -0.6996 1.1945 13 16 0.9717 -1.2002 2.3724 14 8 1.7772 -1.9652 3.2585 15 8 -0.0995 -1.7980 1.6553 16 6 0.4248 0.3332 3.1725 17 6 -0.7208 0.0240 4.1384 18 6 -0.4343 -1.0394 5.1673 19 1 -0.7309 -2.0616 4.9842 20 6 0.2064 -0.7072 6.3420 21 7 0.5336 0.5439 6.5816 22 14 0.6097 -2.0341 7.5935 23 1 1.5016 -3.0459 6.9721 24 1 1.2928 -1.4219 8.7613 25 1 -0.6452 -2.6892 8.0421 26 6 -2.1477 0.1139 3.5939 27 6 -1.6261 1.1847 4.5554 28 1 -0.3634 0.2897 0.9860 29 1 -0.3633 0.7090 -0.7439 30 1 -0.3633 -0.9987 -0.2421 31 1 1.7632 -0.1566 -2.1349 32 1 1.5963 -1.7169 -1.2937 33 1 5.6655 -2.1912 -3.3849 34 1 5.0363 -1.7762 0.0965 35 1 3.4909 -2.6544 -0.0020 36 1 3.9928 -0.0050 1.4310 37 1 3.6506 -1.5777 2.1939 38 1 1.2564 0.7720 3.7238 39 1 0.0806 1.0361 2.4139 40 1 1.0481 0.7677 7.3727 41 1 -2.2704 0.3937 2.5476 42 1 -2.8795 -0.5957 3.9800 43 1 -2.0149 1.1790 5.5737 44 1 -1.4053 2.1688 4.1419 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600894028.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:42:09 Heat of formation + Delta-G solvation = -161.276038 kcal Electronic energy + Delta-G solvation = -28339.902722 eV Core-core repulsion = 24384.229691 eV Total energy + Delta-G solvation = -3955.673031 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.53629 -39.49723 -38.59833 -38.04081 -37.08809 -36.68720 -34.24634 -34.06716 -33.19313 -29.94297 -28.29165 -27.58141 -26.44882 -23.60634 -22.95037 -22.78795 -21.32345 -21.19158 -19.65924 -18.98266 -18.36186 -18.13054 -17.50672 -17.37272 -16.89123 -16.59963 -16.54754 -16.01105 -15.57397 -15.25119 -15.13011 -14.81045 -14.61250 -14.36036 -13.95858 -13.75652 -13.70912 -13.37788 -13.19992 -13.11155 -12.89092 -12.86424 -12.72830 -12.53807 -12.45390 -12.38194 -12.20406 -12.11051 -11.85614 -11.79843 -11.72795 -11.64867 -11.48246 -11.21954 -10.96257 -10.49154 -10.11393 -9.73338 -8.21716 -6.38506 -0.48478 1.20808 1.36560 1.39645 1.47898 1.96454 2.14511 2.39190 3.05856 3.06351 3.34631 3.46855 3.52552 3.67365 3.85724 3.91424 4.01866 4.10039 4.24237 4.31990 4.36419 4.49377 4.57136 4.60509 4.66580 4.71294 4.78353 4.82368 4.86947 4.90234 4.96394 5.01944 5.10749 5.21417 5.23147 5.29838 5.43605 5.52146 5.63722 5.64194 5.68703 5.80837 6.21065 6.69032 7.01792 7.36443 8.85090 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.020364 B = 0.003968 C = 0.003569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.614354 B = 7054.189906 C = 7844.545610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.152 3.848 3 H 0.115 0.885 4 C -0.110 4.110 5 C -0.075 4.075 6 H 0.147 0.853 7 C 0.490 3.510 8 O -0.552 6.552 9 O -0.508 6.508 10 C -0.118 4.118 11 C 0.108 3.892 12 N -1.006 6.006 13 S 2.622 3.378 14 O -0.996 6.996 15 O -0.989 6.989 16 C -0.554 4.554 17 C 0.011 3.989 18 C -0.544 4.544 19 H 0.044 0.956 20 C 0.050 3.950 21 N -0.888 5.888 22 Si 0.925 3.075 23 H -0.278 1.278 24 H -0.269 1.269 25 H -0.268 1.268 26 C -0.192 4.192 27 C -0.135 4.135 28 H 0.050 0.950 29 H 0.108 0.892 30 H 0.072 0.928 31 H 0.100 0.900 32 H 0.052 0.948 33 H 0.426 0.574 34 H 0.114 0.886 35 H 0.051 0.949 36 H 0.105 0.895 37 H 0.084 0.916 38 H 0.119 0.881 39 H 0.139 0.861 40 H 0.266 0.734 41 H 0.101 0.899 42 H 0.077 0.923 43 H 0.064 0.936 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.551 3.903 -16.920 19.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C 0.047 3.953 3 H 0.133 0.867 4 C -0.149 4.149 5 C -0.094 4.094 6 H 0.164 0.836 7 C 0.334 3.666 8 O -0.442 6.442 9 O -0.321 6.321 10 C -0.158 4.158 11 C -0.017 4.017 12 N -0.846 5.846 13 S 2.722 3.278 14 O -0.987 6.987 15 O -0.979 6.979 16 C -0.686 4.686 17 C 0.009 3.991 18 C -0.581 4.581 19 H 0.062 0.938 20 C -0.154 4.154 21 N -0.524 5.524 22 Si 0.750 3.250 23 H -0.203 1.203 24 H -0.194 1.194 25 H -0.192 1.192 26 C -0.229 4.229 27 C -0.174 4.174 28 H 0.068 0.932 29 H 0.126 0.874 30 H 0.091 0.909 31 H 0.118 0.882 32 H 0.071 0.929 33 H 0.288 0.712 34 H 0.132 0.868 35 H 0.070 0.930 36 H 0.123 0.877 37 H 0.102 0.898 38 H 0.137 0.863 39 H 0.157 0.843 40 H 0.076 0.924 41 H 0.120 0.880 42 H 0.095 0.905 43 H 0.082 0.918 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 9.055 3.210 -16.438 19.040 hybrid contribution 0.219 -0.651 0.588 0.905 sum 9.274 2.559 -15.850 18.541 Atomic orbital electron populations 1.22773 0.94017 1.05273 1.03528 1.21136 0.94004 0.97060 0.83100 0.86686 1.21776 0.92939 1.01893 0.98340 1.21078 0.96789 1.02102 0.89426 0.83588 1.23649 0.80085 0.75099 0.87781 1.90723 1.58221 1.50035 1.45244 1.84501 1.25241 1.73808 1.48598 1.21870 1.03441 0.98123 0.92326 1.21681 0.78954 1.02433 0.98619 1.57979 1.18348 1.74886 1.33380 1.04411 0.73281 0.77344 0.72784 1.93428 1.69078 1.69251 1.66917 1.93498 1.57247 1.75891 1.71241 1.30031 1.09278 1.19663 1.09649 1.18349 0.86291 0.98805 0.95662 1.20706 1.41170 0.93495 1.02717 0.93765 1.25445 0.94479 0.96838 0.98627 1.70014 1.36852 1.17370 1.28160 0.86110 0.79055 0.80571 0.79247 1.20312 1.19369 1.19245 1.23199 0.98067 1.03019 0.98612 1.22458 1.04177 0.93042 0.97711 0.93164 0.87367 0.90855 0.88188 0.92899 0.71207 0.86793 0.92985 0.87656 0.89750 0.86269 0.84343 0.92438 0.88034 0.90462 0.91763 0.89360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.87 7.72 71.98 0.56 -4.31 16 2 C 0.15 3.26 3.49 44.83 0.16 3.42 16 3 H 0.12 1.63 8.14 -2.39 -0.02 1.61 16 4 C -0.11 -2.22 3.90 30.53 0.12 -2.10 16 5 C -0.08 -1.23 2.59 -11.51 -0.03 -1.26 16 6 H 0.15 1.44 8.14 -2.38 -0.02 1.42 16 7 C 0.49 8.88 7.63 71.24 0.54 9.42 16 8 O -0.55 -13.98 16.74 21.96 0.37 -13.61 16 9 O -0.51 -6.17 13.30 -51.40 -0.68 -6.85 16 10 C -0.12 -2.23 5.30 30.67 0.16 -2.07 16 11 C 0.11 2.50 6.49 86.36 0.56 3.06 16 12 N -1.01 -28.43 3.20 -491.50 -1.57 -30.01 16 13 S 2.62 106.26 4.29 -56.49 -0.24 106.02 16 14 O -1.00 -48.68 15.72 -127.65 -2.01 -50.69 16 15 O -0.99 -43.30 14.34 -127.65 -1.83 -45.13 16 16 C -0.55 -22.21 5.61 71.98 0.40 -21.81 16 17 C 0.01 0.53 1.52 -52.93 -0.08 0.44 16 18 C -0.54 -30.37 7.68 25.60 0.20 -30.17 16 19 H 0.04 2.59 7.81 -2.91 -0.02 2.56 16 20 C 0.05 2.75 5.43 84.65 0.46 3.21 16 21 N -0.89 -48.96 12.73 21.44 0.27 -48.69 16 22 Si 0.93 44.57 29.54 68.60 2.03 46.60 16 23 H -0.28 -13.81 7.11 99.48 0.71 -13.10 16 24 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 25 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 26 C -0.19 -8.10 9.92 30.62 0.30 -7.79 16 27 C -0.13 -5.99 9.27 30.62 0.28 -5.71 16 28 H 0.05 1.38 3.90 -2.39 -0.01 1.37 16 29 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.07 2.20 6.62 -2.39 -0.02 2.18 16 31 H 0.10 1.68 8.07 -2.39 -0.02 1.66 16 32 H 0.05 1.38 8.05 -2.39 -0.02 1.36 16 33 H 0.43 1.85 9.10 -74.05 -0.67 1.18 16 34 H 0.11 1.57 8.08 -2.39 -0.02 1.55 16 35 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.08 2.39 6.54 -2.39 -0.02 2.38 16 38 H 0.12 4.99 8.14 -2.39 -0.02 4.97 16 39 H 0.14 4.36 6.12 -2.39 -0.01 4.34 16 40 H 0.27 13.96 8.32 -92.71 -0.77 13.19 16 41 H 0.10 3.62 8.14 -2.39 -0.02 3.60 16 42 H 0.08 3.34 8.14 -2.39 -0.02 3.32 16 43 H 0.06 3.13 8.14 -2.39 -0.02 3.11 16 44 H 0.09 3.45 8.14 -2.38 -0.02 3.43 16 Total: -1.00 -76.77 361.76 0.31 -76.46 By element: Atomic # 1 Polarization: 21.23 SS G_CDS: 0.35 Total: 21.57 kcal Atomic # 6 Polarization: -59.31 SS G_CDS: 3.63 Total: -55.67 kcal Atomic # 7 Polarization: -77.40 SS G_CDS: -1.30 Total: -78.70 kcal Atomic # 8 Polarization: -112.13 SS G_CDS: -4.15 Total: -116.28 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Atomic # 16 Polarization: 106.26 SS G_CDS: -0.24 Total: 106.02 kcal Total: -76.77 0.31 -76.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600894028.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.818 kcal (2) G-P(sol) polarization free energy of solvation -76.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds