Wall clock time and date at job start Tue Mar 31 2020 17:55:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.46968 * 2 1 4 4 C 1.53000 * 109.47327 * 239.99892 * 2 1 3 5 5 O 1.42896 * 109.46750 * 304.99476 * 4 2 1 6 6 C 1.42901 * 113.99939 * 179.97438 * 5 4 2 7 7 C 1.52995 * 109.47442 * 180.02562 * 6 5 4 8 8 F 1.39903 * 109.46932 * 59.99970 * 7 6 5 9 9 F 1.39899 * 109.47282 * 180.02562 * 7 6 5 10 10 F 1.39901 * 109.47103 * 300.00114 * 7 6 5 11 11 N 1.46505 * 109.47422 * 119.99151 * 2 1 3 12 12 C 1.34767 * 120.00144 * 275.00740 * 11 2 1 13 13 O 1.21613 * 120.00351 * 359.97438 * 12 11 2 14 14 C 1.47436 * 119.99771 * 179.97438 * 12 11 2 15 15 C 1.39225 * 120.28514 * 354.16028 * 14 12 11 16 16 C 1.38215 * 120.09362 * 180.29944 * 15 14 12 17 17 C 1.38825 * 120.67538 * 359.44064 * 16 15 14 18 18 C 1.37593 * 120.57175 * 0.56268 * 17 16 15 19 19 C 1.40712 * 119.87995 * 359.71907 * 18 17 16 20 20 C 1.40892 * 120.32393 * 180.02562 * 19 18 17 21 21 H 1.07999 * 119.99349 * 145.83829 * 20 19 18 22 22 C 1.40266 * 120.00268 * 325.82735 * 20 19 18 23 23 N 1.30632 * 120.00122 * 350.76588 * 22 20 19 24 24 Si 1.86802 * 120.00203 * 170.76251 * 22 20 19 25 25 H 1.48504 * 109.46833 * 0.02562 * 24 22 20 26 26 H 1.48496 * 109.47489 * 120.00057 * 24 22 20 27 27 H 1.48502 * 109.47140 * 240.00836 * 24 22 20 28 28 H 1.08999 * 109.47133 * 300.00133 * 1 2 3 29 29 H 1.08995 * 109.46838 * 60.00422 * 1 2 3 30 30 H 1.09000 * 109.46497 * 180.02562 * 1 2 3 31 31 H 1.08991 * 109.47080 * 65.00032 * 4 2 1 32 32 H 1.09004 * 109.46821 * 184.99644 * 4 2 1 33 33 H 1.09002 * 109.47367 * 300.00334 * 6 5 4 34 34 H 1.09008 * 109.46823 * 59.99986 * 6 5 4 35 35 H 0.97002 * 119.99538 * 94.99936 * 11 2 1 36 36 H 1.08003 * 119.94839 * 0.02562 * 15 14 12 37 37 H 1.08006 * 119.66223 * 179.70268 * 16 15 14 38 38 H 1.08003 * 119.71226 * 180.30458 * 17 16 15 39 39 H 1.07997 * 120.06549 * 179.74684 * 18 17 16 40 40 H 0.97001 * 119.99775 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 8 1.4704 -2.0304 -1.3092 6 6 1.8837 -2.7926 -2.4451 7 6 1.2155 -4.1684 -2.4068 8 9 -0.1746 -4.0124 -2.4306 9 9 1.6207 -4.9148 -3.5185 10 9 1.5898 -4.8361 -1.2358 11 7 2.0184 -0.6904 1.1963 12 6 2.1470 -0.0180 2.3571 13 8 1.8581 1.1620 2.4116 14 6 2.6380 -0.7131 3.5611 15 6 2.8551 -2.0881 3.5386 16 6 3.3096 -2.7366 4.6714 17 6 3.5658 -2.0289 5.8379 18 6 3.3608 -0.6694 5.8909 19 6 2.8931 0.0139 4.7533 20 6 2.6805 1.4060 4.7970 21 1 2.8645 2.0081 3.9196 22 6 2.2296 2.0098 5.9801 23 7 1.8350 1.2700 6.9818 24 14 2.1933 3.8720 6.1233 25 1 2.6871 4.4753 4.8594 26 1 0.8008 4.3222 6.3751 27 1 3.0628 4.2989 7.2489 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 1.7517 -0.1584 -2.1369 32 1 3.1264 -0.7994 -1.2055 33 1 1.5918 -2.2726 -3.3575 34 1 2.9669 -2.9137 -2.4267 35 1 2.2491 -1.6316 1.1528 36 1 2.6639 -2.6494 2.6359 37 1 3.4710 -3.8043 4.6475 38 1 3.9252 -2.5507 6.7125 39 1 3.5590 -0.1276 6.8039 40 1 1.5236 1.6876 7.8000 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601020086.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:34 Heat of formation + Delta-G solvation = -219.948562 kcal Electronic energy + Delta-G solvation = -28367.542296 eV Core-core repulsion = 23732.024342 eV Total energy + Delta-G solvation = -4635.517954 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.118 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -50.32969 -47.90254 -47.76582 -39.35532 -38.35803 -36.81448 -34.75409 -33.65754 -31.28154 -30.00376 -29.71959 -28.85428 -26.44112 -25.38496 -23.57321 -22.67043 -21.21369 -20.44111 -19.45922 -18.85330 -18.83647 -18.07920 -17.47726 -16.73008 -16.33851 -16.26600 -15.27467 -15.12042 -14.71553 -14.62399 -14.38042 -14.24864 -14.07611 -13.96910 -13.94835 -13.91877 -13.67744 -13.13341 -13.08620 -12.70226 -12.52642 -12.37244 -12.00547 -11.83775 -11.57747 -11.34076 -11.12382 -10.96339 -10.87260 -10.64354 -10.50092 -10.21591 -10.03623 -9.64156 -9.26208 -8.46892 -8.31237 -7.55962 -7.32839 -6.77663 -4.36412 2.17494 2.38380 2.82416 3.03434 3.11549 3.20778 3.23678 3.52754 3.69890 3.90730 3.99300 4.14025 4.21571 4.59279 4.66947 4.70362 4.79410 4.98432 5.11582 5.52544 5.61648 5.68792 5.87394 6.03262 6.11284 6.25663 6.33727 6.48241 6.54397 6.66170 6.98488 7.11645 7.19046 7.26099 7.49204 7.65847 7.91748 8.00957 8.20495 8.41736 8.68906 8.84840 8.92236 9.42654 10.17829 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.017730 B = 0.003014 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.850324 B = 9288.727177 C =10449.841401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.152 3.848 3 H 0.100 0.900 4 C 0.057 3.943 5 O -0.366 6.366 6 C 0.018 3.982 7 C 0.461 3.539 8 F -0.176 7.176 9 F -0.180 7.180 10 F -0.173 7.173 11 N -0.742 5.742 12 C 0.566 3.434 13 O -0.539 6.539 14 C -0.262 4.262 15 C -0.056 4.056 16 C -0.245 4.245 17 C -0.095 4.095 18 C -0.149 4.149 19 C 0.146 3.854 20 C -0.416 4.416 21 H 0.105 0.895 22 C 0.069 3.931 23 N -0.793 5.793 24 Si 0.916 3.084 25 H -0.257 1.257 26 H -0.274 1.274 27 H -0.274 1.274 28 H 0.064 0.936 29 H 0.055 0.945 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.396 0.604 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.117 0.883 40 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.654 -6.202 -17.125 18.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.046 3.954 3 H 0.118 0.882 4 C -0.020 4.020 5 O -0.285 6.285 6 C -0.061 4.061 7 C 0.406 3.594 8 F -0.157 7.157 9 F -0.161 7.161 10 F -0.155 7.155 11 N -0.397 5.397 12 C 0.360 3.640 13 O -0.417 6.417 14 C -0.267 4.267 15 C -0.075 4.075 16 C -0.265 4.265 17 C -0.114 4.114 18 C -0.168 4.168 19 C 0.142 3.858 20 C -0.444 4.444 21 H 0.123 0.877 22 C -0.149 4.149 23 N -0.419 5.419 24 Si 0.741 3.259 25 H -0.181 1.181 26 H -0.199 1.199 27 H -0.199 1.199 28 H 0.083 0.917 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.113 0.887 34 H 0.114 0.886 35 H 0.231 0.769 36 H 0.108 0.892 37 H 0.109 0.891 38 H 0.109 0.891 39 H 0.135 0.865 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.196 -5.397 -16.706 17.558 hybrid contribution -0.041 -0.047 -0.048 0.079 sum 0.155 -5.444 -16.755 17.618 Atomic orbital electron populations 1.22104 0.95158 1.02548 1.02036 1.20807 0.94887 0.96638 0.83052 0.88191 1.23067 0.97847 0.81986 0.99077 1.87963 1.70273 1.27732 1.42558 1.23489 1.00534 0.88895 0.93183 1.20205 0.77444 0.87971 0.73755 1.93224 1.30705 1.95731 1.96061 1.93202 1.90477 1.78818 1.53649 1.93243 1.91010 1.82687 1.48514 1.46067 1.70384 1.13997 1.09288 1.18431 0.76718 0.86343 0.82485 1.90671 1.50835 1.15925 1.84308 1.19456 1.18242 0.92873 0.96096 1.20672 0.97060 0.93392 0.96377 1.20287 1.13818 0.97721 0.94653 1.20801 0.99584 0.94815 0.96217 1.21354 1.02716 0.93218 0.99537 1.17484 0.86058 0.93099 0.89151 1.20192 1.34091 0.92873 0.97290 0.87699 1.26119 0.93054 1.01188 0.94554 1.69729 1.29870 1.38018 1.04255 0.86120 0.78620 0.81935 0.79272 1.18074 1.19944 1.19943 0.91661 0.92609 0.91874 0.91392 0.91780 0.88722 0.88582 0.76922 0.89176 0.89133 0.89133 0.86512 0.90810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.25 9.29 37.16 0.35 -1.90 16 2 C 0.15 2.12 2.98 -67.93 -0.20 1.92 16 3 H 0.10 1.49 7.58 -51.93 -0.39 1.10 16 4 C 0.06 0.55 5.68 37.16 0.21 0.76 16 5 O -0.37 -3.83 9.08 -35.23 -0.32 -4.15 16 6 C 0.02 0.13 5.90 37.16 0.22 0.35 16 7 C 0.46 4.32 3.32 37.16 0.12 4.44 16 8 F -0.18 -1.93 17.26 2.25 0.04 -1.89 16 9 F -0.18 -1.59 17.32 2.25 0.04 -1.55 16 10 F -0.17 -1.99 17.26 2.25 0.04 -1.95 16 11 N -0.74 -12.86 5.01 -54.87 -0.27 -13.13 16 12 C 0.57 12.83 7.68 -12.52 -0.10 12.74 16 13 O -0.54 -13.76 13.26 5.27 0.07 -13.69 16 14 C -0.26 -6.38 5.92 -104.37 -0.62 -7.00 16 15 C -0.06 -1.21 9.52 -39.22 -0.37 -1.59 16 16 C -0.25 -5.29 10.03 -39.37 -0.39 -5.68 16 17 C -0.10 -2.17 10.01 -39.60 -0.40 -2.56 16 18 C -0.15 -3.80 8.62 -38.88 -0.34 -4.13 16 19 C 0.15 3.92 5.51 -106.54 -0.59 3.33 16 20 C -0.42 -11.39 7.68 -37.82 -0.29 -11.68 16 21 H 0.11 2.96 5.92 -52.49 -0.31 2.65 16 22 C 0.07 1.77 5.25 -17.30 -0.09 1.68 16 23 N -0.79 -20.68 11.14 55.56 0.62 -20.06 16 24 Si 0.92 19.62 29.57 -169.99 -5.03 14.59 16 25 H -0.26 -5.57 7.11 56.52 0.40 -5.17 16 26 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 27 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 28 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.90 7.56 -51.93 -0.39 0.51 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.10 0.52 8.14 -51.92 -0.42 0.09 16 35 H 0.40 6.31 6.45 -40.82 -0.26 6.05 16 36 H 0.09 1.65 6.44 -52.48 -0.34 1.31 16 37 H 0.09 1.70 8.06 -52.48 -0.42 1.28 16 38 H 0.09 1.81 8.06 -52.48 -0.42 1.39 16 39 H 0.12 3.04 6.59 -52.49 -0.35 2.69 16 40 H 0.28 6.64 8.29 -40.82 -0.34 6.30 16 LS Contribution 352.39 15.07 5.31 5.31 Total: -1.00 -30.57 352.39 -6.55 -37.13 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: -4.56 Total: 8.72 kcal Atomic # 6 Polarization: -6.84 SS G_CDS: -2.49 Total: -9.32 kcal Atomic # 7 Polarization: -33.53 SS G_CDS: 0.34 Total: -33.19 kcal Atomic # 8 Polarization: -17.59 SS G_CDS: -0.25 Total: -17.84 kcal Atomic # 9 Polarization: -5.51 SS G_CDS: 0.12 Total: -5.39 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -5.03 Total: 14.59 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.57 -6.55 -37.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601020086.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -182.822 kcal (2) G-P(sol) polarization free energy of solvation -30.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -213.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -219.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds