Wall clock time and date at job start Tue Mar 31 2020 16:22:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30764 * 126.36329 * 2 1 4 4 N 1.28418 * 110.63961 * 179.97438 * 3 2 1 5 5 N 1.28946 * 110.20827 * 0.02562 * 4 3 2 6 6 N 1.35062 * 126.36338 * 179.97438 * 2 1 3 7 7 C 1.40148 * 127.38999 * 359.74369 * 6 2 1 8 8 C 1.35551 * 119.99743 * 351.91757 * 7 6 2 9 9 C 1.46961 * 119.99517 * 173.63004 * 8 7 6 10 10 C 1.39968 * 120.15266 * 326.37456 * 9 8 7 11 11 C 1.37785 * 119.84064 * 179.79469 * 10 9 8 12 12 C 1.38684 * 120.15451 * 0.45990 * 11 10 9 13 13 F 1.35102 * 119.84919 * 179.76785 * 12 11 10 14 14 C 1.38696 * 120.30506 * 359.79118 * 12 11 10 15 15 C 1.37772 * 120.15316 * 359.97438 * 14 12 11 16 16 C 1.46643 * 119.99946 * 171.91817 * 7 6 2 17 17 O 1.21744 * 119.99551 * 286.95343 * 16 7 6 18 18 N 1.34766 * 119.99954 * 106.95947 * 16 7 6 19 19 C 1.46507 * 120.00069 * 4.40410 * 18 16 7 20 20 C 1.36738 * 120.00207 * 184.40195 * 18 16 7 21 21 H 1.07996 * 119.99745 * 323.41783 * 20 18 16 22 22 C 1.39102 * 119.99731 * 143.41317 * 20 18 16 23 23 N 1.31341 * 119.99294 * 169.29120 * 22 20 18 24 24 Si 1.86791 * 120.00400 * 349.29276 * 22 20 18 25 25 H 1.48507 * 109.47074 * 89.27485 * 24 22 20 26 26 H 1.48494 * 109.47454 * 209.27326 * 24 22 20 27 27 H 1.48502 * 109.47213 * 329.27397 * 24 22 20 28 28 H 1.09005 * 109.47460 * 262.43467 * 1 2 3 29 29 H 1.08999 * 109.47217 * 22.43938 * 1 2 3 30 30 H 1.09002 * 109.47062 * 142.43440 * 1 2 3 31 31 H 1.07998 * 120.00231 * 353.63133 * 8 7 6 32 32 H 1.07997 * 120.08004 * 0.02562 * 10 9 8 33 33 H 1.08001 * 119.92061 * 180.23694 * 11 10 9 34 34 H 1.08006 * 119.92027 * 179.97438 * 14 12 11 35 35 H 1.08001 * 120.07640 * 180.02562 * 15 14 12 36 36 H 1.08995 * 109.47340 * 59.08466 * 19 18 16 37 37 H 1.09002 * 109.46918 * 179.08484 * 19 18 16 38 38 H 1.09002 * 109.46886 * 299.08500 * 19 18 16 39 39 H 0.97003 * 119.99486 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2823 1.0530 0.0000 4 7 3.5184 0.7050 0.0005 5 7 3.6192 -0.5805 0.0004 6 7 2.3078 -1.0876 0.0005 7 6 1.9157 -2.4331 0.0061 8 6 0.6108 -2.7581 0.1768 9 6 0.1783 -4.1563 0.0435 10 6 0.8108 -5.0034 -0.8739 11 6 0.4029 -6.3143 -0.9906 12 6 -0.6379 -6.7923 -0.2087 13 9 -1.0359 -8.0775 -0.3315 14 6 -1.2725 -5.9569 0.6986 15 6 -0.8717 -4.6453 0.8291 16 6 2.9171 -3.4894 -0.1728 17 8 3.4135 -3.6782 -1.2683 18 7 3.2877 -4.2510 0.8754 19 6 2.6217 -4.0892 2.1703 20 6 4.2852 -5.1749 0.7304 21 1 4.3802 -5.7266 -0.1931 22 6 5.1777 -5.4041 1.7725 23 7 5.9987 -6.4280 1.7206 24 14 5.2085 -4.2558 3.2455 25 1 4.2492 -4.7398 4.2706 26 1 6.5765 -4.2271 3.8223 27 1 4.8242 -2.8876 2.8147 28 1 -0.3634 -0.1353 1.0187 29 1 -0.3633 0.9498 -0.3923 30 1 -0.3633 -0.8146 -0.6265 31 1 -0.1109 -1.9895 0.4109 32 1 1.6190 -4.6314 -1.4860 33 1 0.8926 -6.9701 -1.6953 34 1 -2.0827 -6.3356 1.3042 35 1 -1.3665 -3.9960 1.5363 36 1 1.5543 -4.2782 2.0560 37 1 3.0414 -4.7965 2.8856 38 1 2.7739 -3.0725 2.5325 39 1 6.6213 -6.5876 2.4471 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725713261.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:22:03 Heat of formation + Delta-G solvation = 118.941566 kcal Electronic energy + Delta-G solvation = -28888.776958 eV Core-core repulsion = 24750.936320 eV Total energy + Delta-G solvation = -4137.840638 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.119 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -48.87862 -43.16799 -40.05711 -38.37794 -36.30370 -35.13962 -33.31099 -32.83029 -32.11642 -31.19147 -29.45119 -28.75465 -26.80168 -25.76022 -24.45743 -23.29882 -22.87757 -21.97571 -20.95654 -19.50782 -17.73684 -17.38975 -17.21885 -16.78949 -16.31629 -16.06310 -15.98671 -15.55361 -15.13241 -15.09400 -14.74887 -14.20773 -13.80650 -13.61510 -13.56753 -13.50113 -13.16480 -12.93484 -12.84688 -12.65485 -12.42691 -12.36468 -12.18418 -12.05292 -11.83037 -11.68716 -10.97678 -10.90975 -10.78978 -10.53459 -10.16332 -10.07898 -9.68067 -9.37894 -9.12125 -9.03324 -8.08449 -8.04004 -6.58260 -4.20693 0.12175 1.13030 1.26240 1.67401 2.03909 2.27150 2.88106 3.08417 3.12288 3.30586 3.61334 3.75445 3.88816 3.96909 4.24210 4.25598 4.62955 4.65799 4.70466 4.80398 4.90507 4.94449 4.95386 5.13177 5.22465 5.23837 5.32580 5.47657 5.57589 5.64458 5.74549 5.84305 5.86991 6.00174 6.03302 6.09072 6.31774 6.35976 6.52004 6.85511 7.26748 7.94008 8.18906 8.46152 8.62601 9.02054 9.36224 10.51873 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.008532 B = 0.006759 C = 0.004323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3281.115776 B = 4141.470512 C = 6474.712315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.236 3.764 3 N -0.333 5.333 4 N -0.044 5.044 5 N -0.051 5.051 6 N -0.310 5.310 7 C 0.100 3.900 8 C -0.113 4.113 9 C -0.074 4.074 10 C -0.067 4.067 11 C -0.142 4.142 12 C 0.107 3.893 13 F -0.140 7.140 14 C -0.160 4.160 15 C -0.072 4.072 16 C 0.499 3.501 17 O -0.545 6.545 18 N -0.431 5.431 19 C 0.043 3.957 20 C -0.313 4.313 21 H 0.116 0.884 22 C 0.063 3.937 23 N -0.854 5.854 24 Si 0.884 3.116 25 H -0.273 1.273 26 H -0.284 1.284 27 H -0.262 1.262 28 H 0.103 0.897 29 H 0.108 0.892 30 H 0.102 0.898 31 H 0.154 0.846 32 H 0.156 0.844 33 H 0.139 0.861 34 H 0.136 0.864 35 H 0.136 0.864 36 H 0.063 0.937 37 H 0.086 0.914 38 H 0.047 0.953 39 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.537 5.110 1.442 19.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.039 4.039 3 N -0.184 5.184 4 N -0.038 5.038 5 N -0.035 5.035 6 N -0.101 5.101 7 C 0.002 3.998 8 C -0.137 4.137 9 C -0.076 4.076 10 C -0.085 4.085 11 C -0.161 4.161 12 C 0.088 3.912 13 F -0.119 7.119 14 C -0.178 4.178 15 C -0.090 4.090 16 C 0.286 3.714 17 O -0.427 6.427 18 N -0.149 5.149 19 C -0.100 4.100 20 C -0.440 4.440 21 H 0.133 0.867 22 C -0.145 4.145 23 N -0.489 5.489 24 Si 0.711 3.289 25 H -0.200 1.200 26 H -0.211 1.211 27 H -0.186 1.186 28 H 0.122 0.878 29 H 0.127 0.873 30 H 0.120 0.880 31 H 0.171 0.829 32 H 0.174 0.826 33 H 0.157 0.843 34 H 0.154 0.846 35 H 0.154 0.846 36 H 0.081 0.919 37 H 0.104 0.896 38 H 0.066 0.934 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -16.765 5.551 0.996 17.688 hybrid contribution -0.494 -0.326 1.007 1.168 sum -17.259 5.224 2.003 18.144 Atomic orbital electron populations 1.20877 0.82470 1.06536 1.05027 1.25844 0.98170 0.82490 0.97424 1.74412 0.96487 1.24604 1.22855 1.78053 1.11120 1.04475 1.10161 1.83027 0.96393 1.04228 1.19845 1.48832 1.06146 1.06105 1.48989 1.20353 0.95553 0.80502 1.03375 1.22433 0.93279 0.96660 1.01367 1.18578 0.97955 0.92138 0.98899 1.22037 0.97402 0.92465 0.96557 1.21112 0.96940 0.96881 1.01118 1.17954 0.96236 0.78903 0.98105 1.91495 1.89878 1.35489 1.95025 1.20949 1.02424 0.94184 1.00287 1.21013 0.95411 0.94809 0.97775 1.16974 0.84856 0.82504 0.87084 1.90764 1.56717 1.70838 1.24426 1.43418 1.31918 1.32078 1.07523 1.22311 0.98350 1.01197 0.88118 1.19152 1.05943 1.14238 1.04633 0.86663 1.25399 0.94789 0.95840 0.98506 1.69601 1.20543 1.25594 1.33206 0.86951 0.77648 0.82235 0.82019 1.19977 1.21062 1.18648 0.87824 0.87332 0.88019 0.82935 0.82625 0.84329 0.84595 0.84629 0.91865 0.89556 0.93422 0.91036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.63 8.52 36.00 0.31 -0.32 16 2 C 0.24 3.29 8.06 -155.18 -1.25 2.03 16 3 N -0.33 -5.52 12.16 32.75 0.40 -5.12 16 4 N -0.04 -0.86 13.39 60.35 0.81 -0.05 16 5 N -0.05 -1.07 13.60 60.35 0.82 -0.25 16 6 N -0.31 -5.47 3.85 -6.73 -0.03 -5.50 16 7 C 0.10 1.72 5.49 -81.62 -0.45 1.28 16 8 C -0.11 -1.41 7.77 -37.01 -0.29 -1.70 16 9 C -0.07 -0.97 3.94 -105.07 -0.41 -1.38 16 10 C -0.07 -1.05 8.28 -39.10 -0.32 -1.37 16 11 C -0.14 -2.08 10.01 -39.58 -0.40 -2.48 16 12 C 0.11 1.43 7.31 -39.25 -0.29 1.14 16 13 F -0.14 -1.93 17.26 2.25 0.04 -1.89 16 14 C -0.16 -1.73 10.01 -39.58 -0.40 -2.13 16 15 C -0.07 -0.73 9.53 -39.10 -0.37 -1.10 16 16 C 0.50 11.05 3.94 -12.87 -0.05 11.00 16 17 O -0.55 -14.02 15.39 5.15 0.08 -13.94 16 18 N -0.43 -9.87 2.62 -123.71 -0.32 -10.19 16 19 C 0.04 0.83 7.21 59.85 0.43 1.26 16 20 C -0.31 -8.37 9.50 -15.04 -0.14 -8.51 16 21 H 0.12 3.43 7.85 -52.49 -0.41 3.02 16 22 C 0.06 1.66 5.34 -17.44 -0.09 1.57 16 23 N -0.85 -23.78 13.95 55.50 0.77 -23.01 16 24 Si 0.88 20.19 24.35 -169.99 -4.14 16.05 16 25 H -0.27 -5.67 6.62 56.52 0.37 -5.30 16 26 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 27 H -0.26 -6.11 6.50 56.52 0.37 -5.74 16 28 H 0.10 0.46 7.84 -51.93 -0.41 0.05 16 29 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.10 0.58 6.07 -51.93 -0.32 0.27 16 31 H 0.15 1.19 4.13 -52.49 -0.22 0.98 16 32 H 0.16 2.91 4.93 -52.49 -0.26 2.65 16 33 H 0.14 1.95 8.06 -52.49 -0.42 1.52 16 34 H 0.14 1.13 8.06 -52.48 -0.42 0.70 16 35 H 0.14 0.89 8.06 -52.49 -0.42 0.46 16 36 H 0.06 1.00 5.61 -51.93 -0.29 0.70 16 37 H 0.09 1.71 4.40 -51.93 -0.23 1.49 16 38 H 0.05 0.87 7.01 -51.93 -0.36 0.51 16 39 H 0.28 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 330.15 15.07 4.98 4.98 Total: -1.00 -33.77 330.15 -3.70 -37.47 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: -3.38 Total: 2.16 kcal Atomic # 6 Polarization: 3.01 SS G_CDS: -3.72 Total: -0.71 kcal Atomic # 7 Polarization: -46.58 SS G_CDS: 2.45 Total: -44.13 kcal Atomic # 8 Polarization: -14.02 SS G_CDS: 0.08 Total: -13.94 kcal Atomic # 9 Polarization: -1.93 SS G_CDS: 0.04 Total: -1.89 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -4.14 Total: 16.05 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -33.77 -3.70 -37.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725713261.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.415 kcal (2) G-P(sol) polarization free energy of solvation -33.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.473 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds