Wall clock time and date at job start Tue Mar 31 2020 15:57:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38744 * 119.65549 * 2 1 4 4 C 1.36741 * 120.41547 * 179.74308 * 3 2 1 5 5 C 1.39407 * 119.71923 * 0.25449 * 4 3 2 6 6 C 1.46776 * 134.37054 * 179.97438 * 5 4 3 7 7 C 1.50696 * 126.90746 * 0.02562 * 6 5 4 8 8 C 1.50702 * 109.47161 * 84.99927 * 7 6 5 9 9 O 1.20822 * 120.00112 * 359.97438 * 8 7 6 10 10 O 1.34231 * 120.00260 * 179.97438 * 8 7 6 11 11 C 1.45200 * 117.00156 * 180.02562 * 10 8 7 12 12 C 1.50699 * 109.46810 * 180.02562 * 11 10 8 13 13 O 1.21288 * 120.00523 * 359.97438 * 12 11 10 14 14 N 1.34777 * 119.99914 * 179.97438 * 12 11 10 15 15 C 1.37096 * 120.00457 * 179.97438 * 14 12 11 16 16 H 1.08000 * 119.99776 * 0.02562 * 15 14 12 17 17 C 1.38948 * 120.00607 * 180.02562 * 15 14 12 18 18 N 1.31409 * 120.00362 * 180.02562 * 17 15 14 19 19 Si 1.86806 * 119.99662 * 359.97438 * 17 15 14 20 20 H 1.48503 * 109.46677 * 90.00270 * 19 17 15 21 21 H 1.48497 * 109.47029 * 209.99925 * 19 17 15 22 22 H 1.48497 * 109.47248 * 330.00561 * 19 17 15 23 23 C 1.33994 * 106.18660 * 179.97438 * 6 5 4 24 24 O 1.34459 * 110.15123 * 0.02562 * 23 6 5 25 25 C 1.34799 * 110.89002 * 359.97438 * 24 23 6 26 26 C 1.37854 * 119.66211 * 180.27470 * 2 1 3 27 27 C 1.50704 * 120.08560 * 359.97438 * 26 2 1 28 28 H 1.08999 * 109.46831 * 90.00427 * 1 2 3 29 29 H 1.09006 * 109.47311 * 209.99882 * 1 2 3 30 30 H 1.08999 * 109.47631 * 330.00048 * 1 2 3 31 31 H 1.08002 * 119.79400 * 0.02562 * 3 2 1 32 32 H 1.08001 * 120.14113 * 180.28191 * 4 3 2 33 33 H 1.09001 * 109.47076 * 204.99718 * 7 6 5 34 34 H 1.08999 * 109.47545 * 325.00240 * 7 6 5 35 35 H 1.09002 * 109.46837 * 299.99545 * 11 10 8 36 36 H 1.08996 * 109.47296 * 60.00189 * 11 10 8 37 37 H 0.97003 * 119.99841 * 359.97438 * 14 12 11 38 38 H 0.96997 * 119.99836 * 180.02562 * 18 17 15 39 39 H 1.08002 * 124.92585 * 179.97438 * 23 6 5 40 40 H 1.08996 * 109.47259 * 270.28998 * 27 26 2 41 41 H 1.08997 * 109.46914 * 30.29460 * 27 26 2 42 42 H 1.09002 * 109.46795 * 150.29010 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1934 1.2057 0.0000 4 6 3.5607 1.2238 0.0053 5 6 4.2678 0.0224 0.0053 6 6 5.6927 -0.3299 0.0095 7 6 6.8604 0.6225 0.0160 8 6 7.1664 1.0326 1.4335 9 8 6.5038 0.5965 2.3450 10 8 8.1750 1.8823 1.6836 11 6 8.4127 2.2327 3.0725 12 6 9.5742 3.1891 3.1575 13 8 10.1458 3.5404 2.1470 14 7 9.9779 3.6541 4.3563 15 6 11.0349 4.5238 4.4338 16 1 11.5438 4.8366 3.5340 17 6 11.4515 5.0028 5.6698 18 7 12.4643 5.8368 5.7439 19 14 10.5707 4.4623 7.2260 20 1 11.2178 3.2374 7.7609 21 1 10.6470 5.5451 8.2393 22 1 9.1475 4.1747 6.9148 23 6 5.7463 -1.6688 0.0076 24 8 4.5036 -2.1822 0.0021 25 6 3.5785 -1.2018 0.0007 26 6 2.1892 -1.1979 -0.0057 27 6 1.4299 -2.4997 -0.0114 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3634 0.8899 0.5138 31 1 1.6445 2.1358 0.0004 32 1 4.0906 2.1649 0.0099 33 1 7.7322 0.1314 -0.4163 34 1 6.6121 1.5060 -0.5721 35 1 7.5218 2.7061 3.4853 36 1 8.6416 1.3312 3.6407 37 1 9.5206 3.3735 5.1644 38 1 12.7553 6.1709 6.6068 39 1 6.6559 -2.2512 0.0094 40 1 1.2428 -2.8156 1.0148 41 1 0.4802 -2.3641 -0.5288 42 1 2.0177 -3.2609 -0.5245 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731233551.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:57:44 Heat of formation + Delta-G solvation = -117.755058 kcal Electronic energy + Delta-G solvation = -26789.845759 eV Core-core repulsion = 22700.615988 eV Total energy + Delta-G solvation = -4089.229771 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.51525 -41.62365 -40.18865 -39.44783 -37.61053 -36.09822 -35.50988 -33.88291 -33.43542 -32.34322 -30.67163 -29.16314 -28.30579 -26.96762 -26.39831 -23.81079 -22.72063 -22.14673 -21.55303 -20.57650 -20.39220 -18.90170 -18.27558 -18.10704 -17.72458 -17.63647 -17.35808 -17.03186 -16.51278 -16.30504 -15.90112 -15.37037 -15.34883 -14.84320 -14.71081 -14.54811 -14.44094 -14.24087 -13.85518 -13.73757 -13.61594 -13.53230 -13.41003 -13.03156 -12.98395 -12.72434 -12.56716 -12.47618 -12.43513 -12.02197 -11.87400 -11.72822 -11.71654 -11.60412 -10.73848 -10.60751 -10.35644 -9.52333 -8.97349 -8.47402 -6.10476 -0.08812 0.35888 1.02310 1.11730 1.28818 1.32027 1.42216 1.65694 1.74009 1.83003 2.18627 2.65214 2.86029 3.06815 3.43443 3.47803 3.71418 3.80045 3.91153 3.93665 4.05758 4.11178 4.12897 4.22171 4.26535 4.36572 4.52226 4.57970 4.68032 4.74216 4.81111 4.84428 4.86295 5.09328 5.18034 5.28084 5.30572 5.40674 5.44459 5.48105 5.56046 5.71885 5.83951 6.16604 6.45132 6.65359 6.76256 7.24110 7.75676 8.69108 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.021401 B = 0.002141 C = 0.002074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.021796 B =13075.781697 C =13499.218126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.072 4.072 3 C -0.132 4.132 4 C -0.094 4.094 5 C -0.139 4.139 6 C -0.190 4.190 7 C -0.031 4.031 8 C 0.461 3.539 9 O -0.529 6.529 10 O -0.344 6.344 11 C 0.068 3.932 12 C 0.449 3.551 13 O -0.607 6.607 14 N -0.577 5.577 15 C -0.333 4.333 16 H 0.062 0.938 17 C -0.008 4.008 18 N -0.924 5.924 19 Si 0.961 3.039 20 H -0.255 1.255 21 H -0.271 1.271 22 H -0.233 1.233 23 C 0.032 3.968 24 O -0.199 6.199 25 C 0.028 3.972 26 C -0.088 4.088 27 C -0.110 4.110 28 H 0.087 0.913 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.150 0.850 32 H 0.129 0.871 33 H 0.151 0.849 34 H 0.131 0.869 35 H 0.111 0.889 36 H 0.115 0.885 37 H 0.392 0.608 38 H 0.282 0.718 39 H 0.246 0.754 40 H 0.076 0.924 41 H 0.093 0.907 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.033 -17.748 -10.458 33.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.072 4.072 3 C -0.149 4.149 4 C -0.112 4.112 5 C -0.140 4.140 6 C -0.192 4.192 7 C -0.068 4.068 8 C 0.305 3.695 9 O -0.418 6.418 10 O -0.260 6.260 11 C -0.009 4.009 12 C 0.236 3.764 13 O -0.492 6.492 14 N -0.218 5.218 15 C -0.462 4.462 16 H 0.080 0.920 17 C -0.208 4.208 18 N -0.564 5.564 19 Si 0.780 3.220 20 H -0.179 1.179 21 H -0.196 1.196 22 H -0.157 1.157 23 C -0.033 4.033 24 O -0.100 6.100 25 C -0.018 4.018 26 C -0.089 4.089 27 C -0.166 4.166 28 H 0.105 0.895 29 H 0.099 0.901 30 H 0.098 0.902 31 H 0.168 0.832 32 H 0.147 0.853 33 H 0.169 0.831 34 H 0.149 0.851 35 H 0.129 0.871 36 H 0.133 0.867 37 H 0.228 0.772 38 H 0.092 0.908 39 H 0.261 0.739 40 H 0.095 0.905 41 H 0.112 0.888 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -25.771 -17.773 -10.724 33.091 hybrid contribution 0.554 0.479 1.199 1.405 sum -25.217 -17.294 -9.525 32.026 Atomic orbital electron populations 1.20894 0.87961 1.04194 1.03707 1.19938 0.97858 0.90827 0.98575 1.20991 0.93440 0.98927 1.01581 1.20479 0.94716 0.96420 0.99571 1.20008 0.93143 0.94668 1.06153 1.20550 0.92213 0.94478 1.11953 1.19659 0.97647 1.00752 0.88705 1.24425 0.76303 0.74952 0.93844 1.90662 1.49394 1.53669 1.48051 1.86566 1.50262 1.59510 1.29625 1.22550 0.97591 0.99534 0.81209 1.20174 0.87184 0.85388 0.83671 1.90577 1.59642 1.62714 1.36256 1.41831 1.30457 1.42292 1.07258 1.19004 1.08810 1.22797 0.95555 0.92014 1.26082 0.97000 0.95748 1.01959 1.69776 1.27122 1.31789 1.27692 0.85425 0.80028 0.79381 0.77136 1.17891 1.19605 1.15688 1.24487 0.86463 0.93413 0.98900 1.83978 1.14791 1.34990 1.76266 1.19714 0.91364 0.85780 1.04983 1.18997 0.87447 0.97777 1.04649 1.20796 1.00423 0.92272 1.03146 0.89463 0.90108 0.90153 0.83213 0.85312 0.83132 0.85101 0.87150 0.86701 0.77156 0.90796 0.73857 0.90527 0.88812 0.91782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.03 9.16 71.23 0.65 -0.38 16 2 C -0.07 -1.21 5.88 -19.84 -0.12 -1.33 16 3 C -0.13 -2.39 9.62 22.04 0.21 -2.18 16 4 C -0.09 -2.08 10.05 22.20 0.22 -1.86 16 5 C -0.14 -3.41 6.38 -20.21 -0.13 -3.54 16 6 C -0.19 -4.12 4.85 -18.60 -0.09 -4.21 16 7 C -0.03 -0.60 6.36 29.10 0.19 -0.41 16 8 C 0.46 12.91 7.95 71.24 0.57 13.48 16 9 O -0.53 -17.27 15.78 21.98 0.35 -16.92 16 10 O -0.34 -11.63 9.75 -45.07 -0.44 -12.07 16 11 C 0.07 2.33 5.94 71.24 0.42 2.75 16 12 C 0.45 20.81 7.86 87.66 0.69 21.50 16 13 O -0.61 -34.39 16.08 15.74 0.25 -34.13 16 14 N -0.58 -27.25 5.09 -306.99 -1.56 -28.81 16 15 C -0.33 -19.28 10.16 84.04 0.85 -18.43 16 16 H 0.06 4.24 7.39 -2.91 -0.02 4.21 16 17 C -0.01 -0.43 5.50 84.93 0.47 0.04 16 18 N -0.92 -54.60 13.96 21.66 0.30 -54.29 16 19 Si 0.96 38.11 27.74 68.60 1.90 40.02 16 20 H -0.25 -9.57 7.11 99.48 0.71 -8.86 16 21 H -0.27 -10.63 7.11 99.48 0.71 -9.92 16 22 H -0.23 -7.90 6.52 99.48 0.65 -7.25 16 23 C 0.03 0.59 11.89 66.85 0.79 1.39 16 24 O -0.20 -4.50 10.58 -8.93 -0.09 -4.59 16 25 C 0.03 0.68 7.09 22.99 0.16 0.84 16 26 C -0.09 -1.72 5.89 -19.79 -0.12 -1.84 16 27 C -0.11 -1.47 9.17 71.24 0.65 -0.82 16 28 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.08 0.60 6.68 -2.38 -0.02 0.58 16 30 H 0.08 0.60 8.08 -2.39 -0.02 0.58 16 31 H 0.15 1.93 8.06 -2.91 -0.02 1.90 16 32 H 0.13 2.59 8.06 -2.91 -0.02 2.57 16 33 H 0.15 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.13 2.20 8.14 -2.39 -0.02 2.18 16 35 H 0.11 3.28 8.13 -2.39 -0.02 3.26 16 36 H 0.12 3.32 8.13 -2.39 -0.02 3.30 16 37 H 0.39 15.31 5.76 -92.71 -0.53 14.77 16 38 H 0.28 15.17 8.31 -92.71 -0.77 14.40 16 39 H 0.25 2.26 8.06 -2.91 -0.02 2.24 16 40 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.09 0.81 6.70 -2.39 -0.02 0.80 16 42 H 0.06 0.89 8.09 -2.39 -0.02 0.87 16 Total: -1.00 -83.35 367.49 6.62 -76.73 By element: Atomic # 1 Polarization: 28.58 SS G_CDS: 0.48 Total: 29.06 kcal Atomic # 6 Polarization: -0.42 SS G_CDS: 5.43 Total: 5.01 kcal Atomic # 7 Polarization: -81.84 SS G_CDS: -1.26 Total: -83.11 kcal Atomic # 8 Polarization: -67.78 SS G_CDS: 0.07 Total: -67.71 kcal Atomic # 14 Polarization: 38.11 SS G_CDS: 1.90 Total: 40.02 kcal Total: -83.35 6.62 -76.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731233551.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.027 kcal (2) G-P(sol) polarization free energy of solvation -83.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds