Wall clock time and date at job start Tue Mar 31 2020 18:01:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46500 * 109.46711 * 148.62217 * 3 2 1 5 5 C 1.34780 * 119.99892 * 180.02562 * 4 3 2 6 6 O 1.21283 * 119.99776 * 359.97438 * 5 4 3 7 7 C 1.50700 * 120.00013 * 179.97438 * 5 4 3 8 8 H 1.08998 * 109.47405 * 60.00217 * 7 5 4 9 9 C 1.52998 * 109.46853 * 299.99639 * 7 5 4 10 10 O 1.45199 * 109.46813 * 179.97438 * 7 5 4 11 11 C 1.34230 * 116.99982 * 209.99732 * 10 7 5 12 12 O 1.20823 * 119.99884 * 0.02562 * 11 10 7 13 13 C 1.50701 * 120.00220 * 179.97438 * 11 10 7 14 14 C 1.50703 * 109.46888 * 180.02562 * 13 11 10 15 15 C 1.38302 * 119.92829 * 269.72531 * 14 13 11 16 16 C 1.38102 * 120.06213 * 179.72560 * 15 14 13 17 17 C 1.38879 * 119.93307 * 0.57775 * 16 15 14 18 18 O 1.35749 * 120.06826 * 179.67809 * 17 16 15 19 19 C 1.34836 * 117.00028 * 174.48160 * 18 17 16 20 20 H 1.08000 * 119.99721 * 5.05908 * 19 18 17 21 21 C 1.38653 * 120.00071 * 185.05796 * 19 18 17 22 22 N 1.31554 * 119.99876 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99744 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47211 * 0.02562 * 23 21 19 25 25 H 1.48506 * 109.46730 * 120.00287 * 23 21 19 26 26 H 1.48495 * 109.47022 * 239.99734 * 23 21 19 27 27 C 1.38875 * 119.85995 * 359.69764 * 17 16 15 28 28 C 1.38101 * 119.93503 * 0.02562 * 27 17 16 29 29 H 4.40634 * 5.51473 * 180.02562 * 4 1 2 30 30 H 1.08998 * 109.46929 * 28.61919 * 3 2 1 31 31 H 1.08994 * 109.47055 * 268.61794 * 3 2 1 32 32 H 0.97000 * 120.00581 * 359.97438 * 4 3 2 33 33 H 1.09001 * 109.47338 * 300.00003 * 9 7 5 34 34 H 1.08992 * 109.47094 * 60.00560 * 9 7 5 35 35 H 1.09008 * 109.46625 * 179.97438 * 9 7 5 36 36 H 1.08994 * 109.47247 * 300.00352 * 13 11 10 37 37 H 1.09002 * 109.46807 * 60.00133 * 13 11 10 38 38 H 1.07993 * 119.96949 * 359.97438 * 15 14 13 39 39 H 1.07998 * 120.03194 * 180.27496 * 16 15 14 40 40 H 0.96996 * 119.99659 * 180.02562 * 22 21 19 41 41 H 1.08004 * 120.03057 * 179.97438 * 27 17 16 42 42 H 1.08000 * 119.96554 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.1801 -0.7192 5 6 4.4587 1.3908 -0.8479 6 8 5.2472 0.6041 -0.3679 7 6 4.9604 2.6037 -1.5882 8 1 4.5970 3.5059 -1.0961 9 6 4.4500 2.5684 -3.0301 10 8 6.4124 2.6044 -1.5881 11 6 7.0212 3.8004 -1.6174 12 8 6.3627 4.8131 -1.6418 13 6 8.5261 3.8800 -1.6186 14 6 8.9526 5.3250 -1.6536 15 6 9.1539 5.9559 -2.8677 16 6 9.5393 7.2816 -2.9030 17 6 9.7362 7.9778 -1.7176 18 8 10.1214 9.2792 -1.7490 19 6 10.1838 9.9278 -0.5686 20 1 10.0128 9.3904 0.3525 21 6 10.4675 11.2846 -0.5372 22 7 10.6752 11.9393 -1.6593 23 14 10.5546 12.1830 1.0982 24 1 10.2853 11.2276 2.2028 25 1 11.9086 12.7684 1.2698 26 1 9.5400 13.2670 1.1222 27 6 9.5388 7.3398 -0.5000 28 6 9.1479 6.0156 -0.4713 29 1 -1.0502 -0.0002 0.0003 30 1 3.0097 -0.9013 -0.4922 31 1 3.0093 0.0256 1.0273 32 1 2.5031 1.8091 -1.1034 33 1 4.8135 1.6662 -3.5222 34 1 3.3601 2.5681 -3.0298 35 1 4.8126 3.4460 -3.5654 36 1 8.9157 3.4083 -0.7166 37 1 8.9165 3.3643 -2.4960 38 1 9.0058 5.4125 -3.7891 39 1 9.6921 7.7750 -3.8515 40 1 10.8740 12.8884 -1.6373 41 1 9.6915 7.8785 0.4236 42 1 8.9946 5.5188 0.4753 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000732363104.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:01:36 Heat of formation + Delta-G solvation = -65.573764 kcal Electronic energy + Delta-G solvation = -26326.653259 eV Core-core repulsion = 22239.686239 eV Total energy + Delta-G solvation = -4086.967020 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.93326 -39.82369 -38.95176 -36.99777 -36.21990 -35.85259 -33.45223 -32.57199 -32.11673 -31.26404 -30.17987 -27.70406 -27.00204 -25.32383 -24.60952 -22.01441 -21.84010 -20.80398 -20.16698 -19.32190 -18.00522 -17.90321 -17.57686 -16.98379 -16.59242 -16.24950 -15.78622 -15.69849 -14.78779 -14.61620 -14.51850 -14.34218 -14.12275 -13.83437 -13.64525 -13.59055 -13.30698 -13.10452 -12.76375 -12.71840 -12.53798 -12.01095 -11.84151 -11.54754 -11.36941 -11.29821 -11.06220 -11.00027 -10.89923 -10.80754 -10.62365 -10.42960 -10.38099 -10.07169 -9.63283 -9.33979 -8.84365 -8.18011 -7.21215 -6.46123 -4.04572 1.66591 2.09526 2.11849 2.22478 2.23073 2.31247 2.58814 3.11513 3.13833 3.19470 3.21372 3.68407 3.96244 4.15378 4.44731 4.52465 4.61979 4.83187 4.97650 5.00978 5.06439 5.09767 5.22543 5.27522 5.29234 5.30169 5.37787 5.64461 5.66765 5.71975 5.75500 5.82236 6.19662 6.32279 6.39788 6.68225 6.87199 6.88978 6.94065 7.03870 7.21183 7.33658 7.43040 7.66228 7.80022 7.84511 7.99214 8.99645 9.69180 10.71850 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.019670 B = 0.001936 C = 0.001851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.148100 B =14460.980201 C =15122.297060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.213 4.213 3 C 0.233 3.767 4 N -0.727 5.727 5 C 0.522 3.478 6 O -0.513 6.513 7 C 0.069 3.931 8 H 0.113 0.887 9 C -0.165 4.165 10 O -0.335 6.335 11 C 0.456 3.544 12 O -0.489 6.489 13 C -0.048 4.048 14 C -0.184 4.184 15 C -0.056 4.056 16 C -0.192 4.192 17 C 0.159 3.841 18 O -0.176 6.176 19 C -0.391 4.391 20 H 0.093 0.907 21 C 0.039 3.961 22 N -0.861 5.861 23 Si 0.942 3.058 24 H -0.267 1.267 25 H -0.276 1.276 26 H -0.276 1.276 27 C -0.233 4.233 28 C -0.053 4.053 29 H 0.223 0.777 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.406 0.594 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.106 0.894 37 H 0.106 0.894 38 H 0.110 0.890 39 H 0.118 0.882 40 H 0.270 0.730 41 H 0.128 0.872 42 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.161 -22.117 0.436 27.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.213 4.213 3 C 0.111 3.889 4 N -0.382 5.382 5 C 0.307 3.693 6 O -0.386 6.386 7 C 0.010 3.990 8 H 0.131 0.869 9 C -0.223 4.223 10 O -0.252 6.252 11 C 0.299 3.701 12 O -0.374 6.374 13 C -0.086 4.086 14 C -0.185 4.185 15 C -0.074 4.074 16 C -0.211 4.211 17 C 0.105 3.895 18 O -0.079 6.079 19 C -0.467 4.467 20 H 0.111 0.889 21 C -0.165 4.165 22 N -0.496 5.496 23 Si 0.766 3.234 24 H -0.191 1.191 25 H -0.201 1.201 26 H -0.201 1.201 27 C -0.252 4.252 28 C -0.071 4.071 29 H 0.240 0.760 30 H 0.113 0.887 31 H 0.113 0.887 32 H 0.241 0.759 33 H 0.092 0.908 34 H 0.096 0.904 35 H 0.098 0.902 36 H 0.124 0.876 37 H 0.124 0.876 38 H 0.128 0.872 39 H 0.136 0.864 40 H 0.080 0.920 41 H 0.146 0.854 42 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -15.638 -21.987 0.534 26.986 hybrid contribution -0.748 0.848 0.717 1.339 sum -16.386 -21.138 1.251 26.775 Atomic orbital electron populations 1.25080 0.95983 0.97755 0.99484 1.22855 0.94188 1.02602 1.01684 1.18071 0.83207 0.89132 0.98526 1.45855 1.06816 1.27178 1.58396 1.20237 0.82048 0.86935 0.80075 1.90764 1.54888 1.46066 1.46898 1.22308 0.80612 0.97921 0.98121 0.86946 1.22165 1.01739 1.04578 0.93788 1.86669 1.19698 1.34423 1.84376 1.24414 0.92724 0.80751 0.72258 1.90698 1.66598 1.36021 1.44120 1.20106 0.85881 0.96955 1.05619 1.18635 1.12110 0.93742 0.94000 1.20424 0.97261 0.93631 0.96121 1.20160 1.09970 0.94501 0.96479 1.19403 0.90996 0.85819 0.93260 1.83977 1.72865 1.17561 1.33517 1.21397 1.50063 0.91773 0.83515 0.88940 1.25302 0.96520 0.95522 0.99197 1.70048 1.43869 1.09525 1.26175 0.85637 0.78278 0.79390 0.80070 1.19072 1.20122 1.20129 1.21115 1.10344 0.95467 0.98315 1.20547 0.96423 0.93791 0.96328 0.76036 0.88722 0.88749 0.75924 0.90771 0.90384 0.90159 0.87553 0.87560 0.87151 0.86397 0.92044 0.85444 0.87588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.80 19.25 29.55 0.57 -0.24 16 2 C -0.21 -1.32 13.46 -37.12 -0.50 -1.82 16 3 C 0.23 1.53 6.15 -6.83 -0.04 1.49 16 4 N -0.73 -5.12 5.43 -63.16 -0.34 -5.46 16 5 C 0.52 5.41 7.23 -10.98 -0.08 5.33 16 6 O -0.51 -7.25 16.50 -14.11 -0.23 -7.48 16 7 C 0.07 0.72 2.98 -27.88 -0.08 0.64 16 8 H 0.11 1.17 7.15 -51.93 -0.37 0.80 16 9 C -0.17 -1.28 9.45 37.16 0.35 -0.93 16 10 O -0.33 -4.38 9.42 -45.90 -0.43 -4.81 16 11 C 0.46 6.55 7.92 36.01 0.29 6.84 16 12 O -0.49 -8.47 15.25 -18.75 -0.29 -8.76 16 13 C -0.05 -0.63 5.94 -29.03 -0.17 -0.80 16 14 C -0.18 -3.15 4.38 -104.57 -0.46 -3.61 16 15 C -0.06 -1.01 9.69 -39.61 -0.38 -1.39 16 16 C -0.19 -4.10 9.99 -39.39 -0.39 -4.49 16 17 C 0.16 3.90 6.65 -39.11 -0.26 3.64 16 18 O -0.18 -5.07 9.76 0.04 0.00 -5.07 16 19 C -0.39 -11.01 9.49 30.89 0.29 -10.71 16 20 H 0.09 2.42 5.20 -52.49 -0.27 2.14 16 21 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 22 N -0.86 -25.32 13.67 55.48 0.76 -24.56 16 23 Si 0.94 20.63 29.55 -169.99 -5.02 15.61 16 24 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 25 H -0.28 -5.90 7.11 56.52 0.40 -5.49 16 26 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 27 C -0.23 -5.15 9.17 -39.40 -0.36 -5.51 16 28 C -0.05 -0.98 9.69 -39.61 -0.38 -1.37 16 29 H 0.22 0.34 7.80 -54.08 -0.42 -0.08 16 30 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.41 1.95 7.87 -40.82 -0.32 1.62 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.08 0.39 7.56 -51.93 -0.39 -0.01 16 35 H 0.08 0.71 8.14 -51.92 -0.42 0.29 16 36 H 0.11 1.19 8.08 -51.93 -0.42 0.77 16 37 H 0.11 1.12 8.08 -51.93 -0.42 0.70 16 38 H 0.11 1.63 8.06 -52.49 -0.42 1.20 16 39 H 0.12 2.41 8.06 -52.49 -0.42 1.99 16 40 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 41 H 0.13 2.81 5.64 -52.48 -0.30 2.52 16 42 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 LS Contribution 380.28 15.07 5.73 5.73 Total: -1.00 -35.77 380.28 -6.55 -42.32 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -5.01 Total: 4.44 kcal Atomic # 6 Polarization: -10.24 SS G_CDS: -1.71 Total: -11.96 kcal Atomic # 7 Polarization: -30.44 SS G_CDS: 0.42 Total: -30.03 kcal Atomic # 8 Polarization: -25.17 SS G_CDS: -0.95 Total: -26.12 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -35.77 -6.55 -42.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000732363104.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.249 kcal (2) G-P(sol) polarization free energy of solvation -35.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds