Wall clock time and date at job start Tue Mar 31 2020 18:01:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46500 * 109.46711 * 148.62217 * 3 2 1 5 5 C 1.34780 * 119.99892 * 180.02562 * 4 3 2 6 6 O 1.21283 * 119.99776 * 359.97438 * 5 4 3 7 7 C 1.50700 * 120.00013 * 179.97438 * 5 4 3 8 8 H 1.08998 * 109.47405 * 60.00217 * 7 5 4 9 9 C 1.52998 * 109.46853 * 299.99639 * 7 5 4 10 10 O 1.45199 * 109.46813 * 179.97438 * 7 5 4 11 11 C 1.34230 * 116.99982 * 209.99732 * 10 7 5 12 12 O 1.20823 * 119.99884 * 0.02562 * 11 10 7 13 13 C 1.50701 * 120.00220 * 179.97438 * 11 10 7 14 14 C 1.50703 * 109.46888 * 180.02562 * 13 11 10 15 15 C 1.38302 * 119.92829 * 269.72531 * 14 13 11 16 16 C 1.38102 * 120.06213 * 179.72560 * 15 14 13 17 17 C 1.38879 * 119.93307 * 0.57775 * 16 15 14 18 18 O 1.35749 * 120.06826 * 179.67809 * 17 16 15 19 19 C 1.34836 * 117.00028 * 174.48160 * 18 17 16 20 20 H 1.08000 * 119.99721 * 5.05908 * 19 18 17 21 21 C 1.38653 * 120.00071 * 185.05796 * 19 18 17 22 22 N 1.31554 * 119.99876 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99744 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47211 * 0.02562 * 23 21 19 25 25 H 1.48506 * 109.46730 * 120.00287 * 23 21 19 26 26 H 1.48495 * 109.47022 * 239.99734 * 23 21 19 27 27 C 1.38875 * 119.85995 * 359.69764 * 17 16 15 28 28 C 1.38101 * 119.93503 * 0.02562 * 27 17 16 29 29 H 4.40634 * 5.51473 * 180.02562 * 4 1 2 30 30 H 1.08998 * 109.46929 * 28.61919 * 3 2 1 31 31 H 1.08994 * 109.47055 * 268.61794 * 3 2 1 32 32 H 0.97000 * 120.00581 * 359.97438 * 4 3 2 33 33 H 1.09001 * 109.47338 * 300.00003 * 9 7 5 34 34 H 1.08992 * 109.47094 * 60.00560 * 9 7 5 35 35 H 1.09008 * 109.46625 * 179.97438 * 9 7 5 36 36 H 1.08994 * 109.47247 * 300.00352 * 13 11 10 37 37 H 1.09002 * 109.46807 * 60.00133 * 13 11 10 38 38 H 1.07993 * 119.96949 * 359.97438 * 15 14 13 39 39 H 1.07998 * 120.03194 * 180.27496 * 16 15 14 40 40 H 0.96996 * 119.99659 * 180.02562 * 22 21 19 41 41 H 1.08004 * 120.03057 * 179.97438 * 27 17 16 42 42 H 1.08000 * 119.96554 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.1801 -0.7192 5 6 4.4587 1.3908 -0.8479 6 8 5.2472 0.6041 -0.3679 7 6 4.9604 2.6037 -1.5882 8 1 4.5970 3.5059 -1.0961 9 6 4.4500 2.5684 -3.0301 10 8 6.4124 2.6044 -1.5881 11 6 7.0212 3.8004 -1.6174 12 8 6.3627 4.8131 -1.6418 13 6 8.5261 3.8800 -1.6186 14 6 8.9526 5.3250 -1.6536 15 6 9.1539 5.9559 -2.8677 16 6 9.5393 7.2816 -2.9030 17 6 9.7362 7.9778 -1.7176 18 8 10.1214 9.2792 -1.7490 19 6 10.1838 9.9278 -0.5686 20 1 10.0128 9.3904 0.3525 21 6 10.4675 11.2846 -0.5372 22 7 10.6752 11.9393 -1.6593 23 14 10.5546 12.1830 1.0982 24 1 10.2853 11.2276 2.2028 25 1 11.9086 12.7684 1.2698 26 1 9.5400 13.2670 1.1222 27 6 9.5388 7.3398 -0.5000 28 6 9.1479 6.0156 -0.4713 29 1 -1.0502 -0.0002 0.0003 30 1 3.0097 -0.9013 -0.4922 31 1 3.0093 0.0256 1.0273 32 1 2.5031 1.8091 -1.1034 33 1 4.8135 1.6662 -3.5222 34 1 3.3601 2.5681 -3.0298 35 1 4.8126 3.4460 -3.5654 36 1 8.9157 3.4083 -0.7166 37 1 8.9165 3.3643 -2.4960 38 1 9.0058 5.4125 -3.7891 39 1 9.6921 7.7750 -3.8515 40 1 10.8740 12.8884 -1.6373 41 1 9.6915 7.8785 0.4236 42 1 8.9946 5.5188 0.4753 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000732363104.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:01:35 Heat of formation + Delta-G solvation = -88.564514 kcal Electronic energy + Delta-G solvation = -26327.650213 eV Core-core repulsion = 22239.686239 eV Total energy + Delta-G solvation = -4087.963974 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.94299 -40.91111 -40.50112 -38.50586 -37.45655 -36.57358 -34.43833 -34.08161 -33.17367 -32.41173 -31.80037 -28.52214 -28.23998 -27.16302 -25.49323 -23.65920 -23.09937 -21.75793 -21.40006 -19.90306 -19.84990 -18.96321 -18.83178 -18.23500 -17.45236 -17.23527 -16.67678 -16.61081 -16.35240 -16.23092 -15.90295 -15.52754 -15.24491 -15.18069 -14.84042 -14.49294 -14.37685 -14.25223 -14.22758 -13.91046 -13.61208 -13.42727 -13.01543 -12.91693 -12.70851 -12.52595 -12.35105 -12.28384 -12.10575 -11.94822 -11.82473 -11.57118 -11.51676 -11.18942 -10.91297 -10.80465 -10.27287 -9.78404 -8.95843 -8.48264 -6.16353 0.54715 0.60136 1.07762 1.22253 1.33321 1.34372 1.42411 1.52789 1.74191 1.81002 2.16953 2.47167 2.83504 3.15889 3.30941 3.45773 3.50093 3.69450 3.78017 3.86284 4.00718 4.02503 4.17693 4.42362 4.46188 4.48890 4.56357 4.61334 4.63111 4.68243 4.78767 4.98080 5.03635 5.05830 5.11969 5.13919 5.26622 5.34276 5.54138 5.70235 5.73088 6.02104 6.19853 6.25063 6.55117 6.74334 6.95038 6.96501 7.76746 8.75117 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.019670 B = 0.001936 C = 0.001851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.148100 B =14460.980201 C =15122.297060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.249 4.249 3 C 0.233 3.767 4 N -0.710 5.710 5 C 0.526 3.474 6 O -0.556 6.556 7 C 0.063 3.937 8 H 0.112 0.888 9 C -0.160 4.160 10 O -0.339 6.339 11 C 0.464 3.536 12 O -0.526 6.526 13 C -0.049 4.049 14 C -0.158 4.158 15 C -0.050 4.050 16 C -0.205 4.205 17 C 0.117 3.883 18 O -0.231 6.231 19 C -0.414 4.414 20 H 0.101 0.899 21 C -0.023 4.023 22 N -0.919 5.919 23 Si 1.019 2.981 24 H -0.252 1.252 25 H -0.266 1.266 26 H -0.269 1.269 27 C -0.245 4.245 28 C -0.056 4.056 29 H 0.252 0.748 30 H 0.095 0.905 31 H 0.090 0.910 32 H 0.418 0.582 33 H 0.077 0.923 34 H 0.107 0.893 35 H 0.070 0.930 36 H 0.135 0.865 37 H 0.144 0.856 38 H 0.152 0.848 39 H 0.116 0.884 40 H 0.273 0.727 41 H 0.118 0.882 42 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.158 -25.113 1.109 31.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.250 4.250 3 C 0.111 3.889 4 N -0.364 5.364 5 C 0.311 3.689 6 O -0.433 6.433 7 C 0.005 3.995 8 H 0.130 0.870 9 C -0.217 4.217 10 O -0.255 6.255 11 C 0.308 3.692 12 O -0.414 6.414 13 C -0.086 4.086 14 C -0.159 4.159 15 C -0.068 4.068 16 C -0.224 4.224 17 C 0.066 3.934 18 O -0.138 6.138 19 C -0.490 4.490 20 H 0.118 0.882 21 C -0.221 4.221 22 N -0.558 5.558 23 Si 0.838 3.162 24 H -0.176 1.176 25 H -0.191 1.191 26 H -0.194 1.194 27 C -0.264 4.264 28 C -0.074 4.074 29 H 0.269 0.731 30 H 0.113 0.887 31 H 0.108 0.892 32 H 0.255 0.745 33 H 0.096 0.904 34 H 0.126 0.874 35 H 0.089 0.911 36 H 0.152 0.848 37 H 0.161 0.839 38 H 0.170 0.830 39 H 0.134 0.866 40 H 0.082 0.918 41 H 0.136 0.864 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -17.688 -25.055 1.196 30.693 hybrid contribution -0.348 1.355 0.424 1.462 sum -18.037 -23.700 1.620 29.827 Atomic orbital electron populations 1.25873 0.96734 0.95897 0.97661 1.22901 0.94382 1.04305 1.03363 1.18038 0.83936 0.88757 0.98166 1.45747 1.05965 1.27374 1.57343 1.20243 0.82661 0.86417 0.79573 1.90746 1.56105 1.47516 1.48916 1.22579 0.79188 0.97852 0.99877 0.87002 1.22179 1.03616 1.04238 0.91690 1.86631 1.21415 1.33546 1.83921 1.24427 0.93001 0.80508 0.71224 1.90707 1.67499 1.37164 1.46061 1.20232 0.85331 0.94097 1.08912 1.19147 1.08024 0.95741 0.92943 1.20903 0.95275 0.92219 0.98421 1.20452 1.10282 0.96081 0.95581 1.19971 0.92884 0.85136 0.95367 1.83941 1.76088 1.19706 1.34045 1.21864 1.50533 0.92587 0.84012 0.88174 1.26595 0.95863 0.96063 1.03530 1.70187 1.46595 1.10015 1.28966 0.84524 0.78668 0.77947 0.75023 1.17583 1.19132 1.19363 1.21220 1.10930 0.97067 0.97167 1.20945 0.95310 0.92471 0.98668 0.73132 0.88674 0.89237 0.74459 0.90391 0.87414 0.91111 0.84752 0.83870 0.83017 0.86630 0.91807 0.86394 0.84381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.00 19.25 74.32 1.43 0.43 16 2 C -0.25 -2.61 13.46 31.13 0.42 -2.19 16 3 C 0.23 2.79 6.15 84.57 0.52 3.31 16 4 N -0.71 -8.73 5.43 -472.13 -2.56 -11.29 16 5 C 0.53 10.05 7.23 87.66 0.63 10.68 16 6 O -0.56 -15.14 16.50 15.76 0.26 -14.88 16 7 C 0.06 1.19 2.98 29.85 0.09 1.27 16 8 H 0.11 2.13 7.15 -2.39 -0.02 2.11 16 9 C -0.16 -2.07 9.45 71.98 0.68 -1.39 16 10 O -0.34 -7.95 9.42 -45.07 -0.42 -8.38 16 11 C 0.46 11.85 7.92 71.24 0.56 12.42 16 12 O -0.53 -17.06 15.25 21.97 0.34 -16.72 16 13 C -0.05 -1.05 5.94 29.10 0.17 -0.88 16 14 C -0.16 -4.91 4.38 -19.83 -0.09 -4.99 16 15 C -0.05 -1.69 9.69 22.25 0.22 -1.47 16 16 C -0.20 -8.87 9.99 22.39 0.22 -8.64 16 17 C 0.12 5.97 6.65 22.58 0.15 6.12 16 18 O -0.23 -14.22 9.76 -22.78 -0.22 -14.44 16 19 C -0.41 -24.60 9.49 67.92 0.64 -23.95 16 20 H 0.10 5.50 5.20 -2.91 -0.02 5.48 16 21 C -0.02 -1.33 5.49 84.83 0.47 -0.86 16 22 N -0.92 -57.09 13.67 21.61 0.30 -56.79 16 23 Si 1.02 43.58 29.55 68.60 2.03 45.61 16 24 H -0.25 -10.02 7.11 99.48 0.71 -9.31 16 25 H -0.27 -10.85 7.11 99.48 0.71 -10.15 16 26 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 27 C -0.24 -11.00 9.17 22.39 0.21 -10.80 16 28 C -0.06 -1.99 9.69 22.25 0.22 -1.77 16 29 H 0.25 -0.16 7.80 -4.41 -0.03 -0.19 16 30 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.42 3.01 7.87 -92.71 -0.73 2.28 16 33 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.11 0.72 7.56 -2.39 -0.02 0.70 16 35 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 36 H 0.13 2.29 8.08 -2.39 -0.02 2.27 16 37 H 0.14 2.16 8.08 -2.39 -0.02 2.14 16 38 H 0.15 3.83 8.06 -2.91 -0.02 3.80 16 39 H 0.12 4.92 8.06 -2.91 -0.02 4.90 16 40 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 41 H 0.12 5.41 5.64 -2.91 -0.02 5.39 16 42 H 0.14 3.98 8.06 -2.91 -0.02 3.96 16 Total: -1.00 -84.20 380.28 6.58 -77.61 By element: Atomic # 1 Polarization: 21.67 SS G_CDS: 0.33 Total: 22.00 kcal Atomic # 6 Polarization: -29.27 SS G_CDS: 6.54 Total: -22.72 kcal Atomic # 7 Polarization: -65.82 SS G_CDS: -2.27 Total: -68.09 kcal Atomic # 8 Polarization: -54.37 SS G_CDS: -0.05 Total: -54.42 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Total: -84.20 6.58 -77.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000732363104.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.950 kcal (2) G-P(sol) polarization free energy of solvation -84.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds