Wall clock time and date at job start Tue Mar 31 2020 18:09:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46493 * 109.47556 * 2 1 4 4 C 1.46498 * 119.99827 * 270.00335 * 3 2 1 5 5 C 1.50701 * 109.47159 * 269.99732 * 4 3 2 6 6 H 1.08003 * 119.99961 * 0.02562 * 5 4 3 7 7 C 1.37878 * 120.00118 * 179.97438 * 5 4 3 8 8 N 1.31511 * 120.00207 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 120.00052 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47130 * 59.99915 * 9 7 5 11 11 H 1.48498 * 109.47128 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.46998 * 300.00374 * 9 7 5 13 13 C 1.34768 * 120.00166 * 89.99907 * 3 2 1 14 14 O 1.21282 * 120.00257 * 180.02562 * 13 3 2 15 15 C 1.50700 * 120.00030 * 359.97438 * 13 3 2 16 16 O 1.45200 * 109.47003 * 179.97438 * 15 13 3 17 17 C 1.34820 * 116.99908 * 180.02562 * 16 15 13 18 18 O 1.21573 * 119.99728 * 0.02562 * 17 16 15 19 19 C 1.46914 * 120.00159 * 180.02562 * 17 16 15 20 20 C 1.36147 * 127.15016 * 359.97438 * 19 17 16 21 21 O 1.33779 * 109.83874 * 180.02562 * 20 19 17 22 22 C 1.34913 * 111.36811 * 359.97438 * 21 20 19 23 23 C 1.38965 * 133.10411 * 180.02562 * 22 21 20 24 24 C 1.37845 * 119.97415 * 179.97438 * 23 22 21 25 25 C 1.38674 * 120.65332 * 0.02562 * 24 23 22 26 26 C 1.37851 * 120.20115 * 359.97438 * 25 24 23 27 27 C 1.39104 * 119.62646 * 0.02562 * 26 25 24 28 28 H 1.09005 * 109.46915 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.46729 * 300.00141 * 1 2 3 30 30 H 1.09001 * 109.46997 * 60.00190 * 1 2 3 31 31 H 1.09007 * 109.46921 * 239.99720 * 2 1 3 32 32 H 1.09000 * 109.47452 * 120.00432 * 2 1 3 33 33 H 1.09004 * 109.47556 * 29.99431 * 4 3 2 34 34 H 1.09003 * 109.47554 * 149.99808 * 4 3 2 35 35 H 0.97004 * 120.00223 * 179.97438 * 8 7 5 36 36 H 1.09003 * 109.46855 * 60.00676 * 15 13 3 37 37 H 1.08996 * 109.47257 * 300.00205 * 15 13 3 38 38 H 1.08002 * 125.08253 * 359.97074 * 20 19 17 39 39 H 1.08001 * 120.00921 * 0.25389 * 23 22 21 40 40 H 1.07997 * 119.66934 * 179.97438 * 24 23 22 41 41 H 1.08002 * 119.90251 * 179.97438 * 25 24 23 42 42 H 1.07998 * 120.18933 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2626 2.0717 -1.2687 5 6 3.6858 1.8348 -1.7038 6 1 4.3427 1.2300 -1.0963 7 6 4.1491 2.3894 -2.8781 8 7 3.3492 3.1255 -3.6182 9 14 5.9136 2.0964 -3.4170 10 1 6.1417 0.6396 -3.5937 11 1 6.1610 2.7963 -4.7032 12 1 6.8408 2.6207 -2.3823 13 6 2.2431 2.0164 1.1671 14 8 2.6470 3.1600 1.1671 15 6 1.9913 1.3063 2.4722 16 8 2.3066 2.1957 3.5758 17 6 2.1349 1.7099 4.8217 18 8 1.7331 0.5736 4.9810 19 6 2.4334 2.5536 5.9868 20 6 2.8878 3.8369 5.9777 21 8 3.0425 4.2726 7.2331 22 6 2.7054 3.3215 8.1286 23 6 2.6928 3.2869 9.5177 24 6 2.2875 2.1448 10.1746 25 6 1.8904 1.0230 9.4626 26 6 1.8962 1.0385 8.0842 27 6 2.3033 2.1858 7.4111 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3632 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 1.5818 1.6876 -2.0284 34 1 2.0957 3.1410 -1.1385 35 1 3.6752 3.5159 -4.4442 36 1 2.6212 0.4186 2.5302 37 1 0.9433 1.0126 2.5298 38 1 3.0936 4.4164 5.0898 39 1 2.9962 4.1561 10.0825 40 1 2.2801 2.1231 11.2543 41 1 1.5755 0.1344 9.9896 42 1 1.5864 0.1649 7.5299 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000733598385.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:28 Heat of formation + Delta-G solvation = -84.299710 kcal Electronic energy + Delta-G solvation = -27160.325386 eV Core-core repulsion = 23072.546348 eV Total energy + Delta-G solvation = -4087.779038 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.94627 -40.34332 -38.92341 -38.24166 -36.33977 -35.33372 -33.34389 -32.85862 -30.79663 -30.23708 -30.04467 -29.00470 -26.63359 -24.46785 -23.60334 -23.09574 -22.61750 -22.46068 -20.51081 -18.75560 -18.39087 -17.68113 -16.89563 -16.86521 -16.58538 -16.37117 -16.24025 -16.03570 -15.61242 -15.11977 -14.51099 -14.46026 -14.25046 -14.04522 -13.51079 -13.36751 -13.23667 -12.92149 -12.66066 -12.54600 -12.29464 -12.16180 -12.07592 -11.65952 -11.36574 -11.25769 -10.98017 -10.90530 -10.73529 -10.62761 -10.54840 -10.53544 -10.17228 -9.70504 -9.04474 -9.04355 -8.63902 -8.46658 -7.79048 -6.07957 -4.13026 0.39426 0.91972 1.32672 2.19154 2.42694 2.78322 3.20835 3.30393 3.34878 3.38439 3.39022 3.81940 4.05832 4.30016 4.42065 4.45058 4.62779 4.82984 4.90974 4.95200 5.00867 5.10468 5.16722 5.18263 5.26676 5.34226 5.44881 5.56282 5.70965 5.75936 5.83172 5.96953 5.99514 6.09590 6.16911 6.19048 6.29924 6.42714 6.67922 6.96571 7.36353 7.43761 7.65536 7.87766 8.17712 8.25970 8.80701 8.95695 9.52027 11.00135 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.019090 B = 0.002407 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.384235 B =11629.760320 C =12457.624223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.101 3.899 3 N -0.591 5.591 4 C 0.248 3.752 5 C -0.529 4.529 6 H 0.057 0.943 7 C 0.062 3.938 8 N -0.894 5.894 9 Si 0.899 3.101 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.508 3.492 14 O -0.520 6.520 15 C 0.052 3.948 16 O -0.328 6.328 17 C 0.539 3.461 18 O -0.507 6.507 19 C -0.227 4.227 20 C 0.113 3.887 21 O -0.180 6.180 22 C 0.043 3.957 23 C -0.102 4.102 24 C -0.095 4.095 25 C -0.130 4.130 26 C -0.065 4.065 27 C -0.088 4.088 28 H 0.062 0.938 29 H 0.050 0.950 30 H 0.063 0.937 31 H 0.088 0.912 32 H 0.065 0.935 33 H 0.036 0.964 34 H 0.045 0.955 35 H 0.264 0.736 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.233 0.767 39 H 0.135 0.865 40 H 0.137 0.863 41 H 0.133 0.867 42 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.986 -4.047 24.356 25.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.023 4.023 3 N -0.325 5.325 4 C 0.130 3.870 5 C -0.568 4.568 6 H 0.076 0.924 7 C -0.140 4.140 8 N -0.533 5.533 9 Si 0.726 3.274 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.201 1.201 13 C 0.292 3.708 14 O -0.396 6.396 15 C -0.025 4.025 16 O -0.243 6.243 17 C 0.384 3.616 18 O -0.397 6.397 19 C -0.230 4.230 20 C 0.045 3.955 21 O -0.079 6.079 22 C -0.003 4.003 23 C -0.120 4.120 24 C -0.113 4.113 25 C -0.148 4.148 26 C -0.083 4.083 27 C -0.089 4.089 28 H 0.081 0.919 29 H 0.069 0.931 30 H 0.082 0.918 31 H 0.106 0.894 32 H 0.083 0.917 33 H 0.054 0.946 34 H 0.063 0.937 35 H 0.074 0.926 36 H 0.115 0.885 37 H 0.114 0.886 38 H 0.249 0.751 39 H 0.153 0.847 40 H 0.155 0.845 41 H 0.151 0.849 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -4.806 -3.398 24.258 24.962 hybrid contribution 0.863 -0.512 -0.669 1.206 sum -3.943 -3.910 23.589 24.234 Atomic orbital electron populations 1.22234 0.96491 1.01733 1.02427 1.21521 0.93786 0.83912 1.03083 1.48207 1.63710 1.13431 1.07119 1.19334 0.96480 0.93700 0.77523 1.21382 0.96845 1.32191 1.06383 0.92447 1.24930 0.97919 0.94854 0.96336 1.69917 1.35765 1.33248 1.14356 0.86546 0.84690 0.78276 0.77841 1.20225 1.21151 1.20145 1.19681 0.79716 0.87138 0.84262 1.90707 1.44648 1.17498 1.86759 1.22994 1.02869 0.92591 0.84018 1.86587 1.78942 1.44881 1.13916 1.19797 0.74430 0.85024 0.82376 1.90830 1.43076 1.19031 1.86721 1.19909 1.16266 0.95906 0.90900 1.25016 0.91296 0.93631 0.85580 1.83913 1.69958 1.39347 1.14675 1.19577 1.02328 0.86835 0.91525 1.19965 1.03725 1.00086 0.88241 1.20967 0.98211 0.91990 1.00182 1.21135 1.01181 0.98963 0.93485 1.20718 0.96860 0.96783 0.93940 1.19334 1.03642 0.95674 0.90256 0.91865 0.93122 0.91767 0.89374 0.91712 0.94604 0.93692 0.92593 0.88501 0.88569 0.75053 0.84668 0.84508 0.84931 0.84413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.22 10.24 37.16 0.38 -1.84 16 2 C 0.10 1.57 5.93 -4.04 -0.02 1.54 16 3 N -0.59 -12.19 2.46 -175.06 -0.43 -12.62 16 4 C 0.25 6.33 5.16 -5.19 -0.03 6.30 16 5 C -0.53 -14.75 9.39 -34.44 -0.32 -15.07 16 6 H 0.06 1.59 7.81 -52.48 -0.41 1.18 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 8 N -0.89 -26.21 13.29 55.43 0.74 -25.47 16 9 Si 0.90 21.65 29.54 -169.99 -5.02 16.63 16 10 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 13 C 0.51 10.51 7.75 -10.99 -0.09 10.43 16 14 O -0.52 -13.02 16.08 -14.11 -0.23 -13.25 16 15 C 0.05 0.84 4.51 36.01 0.16 1.01 16 16 O -0.33 -5.37 9.60 -47.51 -0.46 -5.83 16 17 C 0.54 8.12 7.94 34.24 0.27 8.39 16 18 O -0.51 -8.25 16.08 -19.32 -0.31 -8.56 16 19 C -0.23 -2.96 6.30 -103.28 -0.65 -3.61 16 20 C 0.11 1.21 11.82 29.98 0.35 1.56 16 21 O -0.18 -1.94 10.53 5.39 0.06 -1.88 16 22 C 0.04 0.47 7.39 -38.57 -0.28 0.19 16 23 C -0.10 -0.83 10.06 -39.46 -0.40 -1.23 16 24 C -0.10 -0.66 10.01 -39.56 -0.40 -1.06 16 25 C -0.13 -1.03 10.04 -39.56 -0.40 -1.43 16 26 C -0.07 -0.70 9.88 -39.40 -0.39 -1.09 16 27 C -0.09 -1.08 6.29 -104.97 -0.66 -1.74 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.05 0.63 7.22 -51.93 -0.37 0.26 16 30 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 31 H 0.09 1.41 8.07 -51.93 -0.42 0.99 16 32 H 0.06 0.84 6.44 -51.93 -0.33 0.51 16 33 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 34 H 0.05 1.29 7.42 -51.93 -0.39 0.91 16 35 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 36 H 0.10 1.41 7.40 -51.93 -0.38 1.02 16 37 H 0.10 1.34 7.18 -51.93 -0.37 0.97 16 38 H 0.23 1.89 8.06 -52.49 -0.42 1.47 16 39 H 0.14 0.78 8.06 -52.49 -0.42 0.36 16 40 H 0.14 0.53 8.06 -52.49 -0.42 0.11 16 41 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 42 H 0.14 1.51 7.54 -52.49 -0.40 1.11 16 LS Contribution 371.02 15.07 5.59 5.59 Total: -1.00 -34.91 371.02 -7.79 -42.70 By element: Atomic # 1 Polarization: 3.86 SS G_CDS: -5.17 Total: -1.31 kcal Atomic # 6 Polarization: 6.57 SS G_CDS: -2.56 Total: 4.00 kcal Atomic # 7 Polarization: -38.40 SS G_CDS: 0.31 Total: -38.09 kcal Atomic # 8 Polarization: -28.58 SS G_CDS: -0.94 Total: -29.52 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.91 -7.79 -42.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733598385.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.604 kcal (2) G-P(sol) polarization free energy of solvation -34.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds