Wall clock time and date at job start Tue Mar 31 2020 18:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46493 * 109.47556 * 2 1 4 4 C 1.46498 * 119.99827 * 270.00335 * 3 2 1 5 5 C 1.50701 * 109.47159 * 269.99732 * 4 3 2 6 6 H 1.08003 * 119.99961 * 0.02562 * 5 4 3 7 7 C 1.37878 * 120.00118 * 179.97438 * 5 4 3 8 8 N 1.31511 * 120.00207 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 120.00052 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47130 * 59.99915 * 9 7 5 11 11 H 1.48498 * 109.47128 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.46998 * 300.00374 * 9 7 5 13 13 C 1.34768 * 120.00166 * 89.99907 * 3 2 1 14 14 O 1.21282 * 120.00257 * 180.02562 * 13 3 2 15 15 C 1.50700 * 120.00030 * 359.97438 * 13 3 2 16 16 O 1.45200 * 109.47003 * 179.97438 * 15 13 3 17 17 C 1.34820 * 116.99908 * 180.02562 * 16 15 13 18 18 O 1.21573 * 119.99728 * 0.02562 * 17 16 15 19 19 C 1.46914 * 120.00159 * 180.02562 * 17 16 15 20 20 C 1.36147 * 127.15016 * 359.97438 * 19 17 16 21 21 O 1.33779 * 109.83874 * 180.02562 * 20 19 17 22 22 C 1.34913 * 111.36811 * 359.97438 * 21 20 19 23 23 C 1.38965 * 133.10411 * 180.02562 * 22 21 20 24 24 C 1.37845 * 119.97415 * 179.97438 * 23 22 21 25 25 C 1.38674 * 120.65332 * 0.02562 * 24 23 22 26 26 C 1.37851 * 120.20115 * 359.97438 * 25 24 23 27 27 C 1.39104 * 119.62646 * 0.02562 * 26 25 24 28 28 H 1.09005 * 109.46915 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.46729 * 300.00141 * 1 2 3 30 30 H 1.09001 * 109.46997 * 60.00190 * 1 2 3 31 31 H 1.09007 * 109.46921 * 239.99720 * 2 1 3 32 32 H 1.09000 * 109.47452 * 120.00432 * 2 1 3 33 33 H 1.09004 * 109.47556 * 29.99431 * 4 3 2 34 34 H 1.09003 * 109.47554 * 149.99808 * 4 3 2 35 35 H 0.97004 * 120.00223 * 179.97438 * 8 7 5 36 36 H 1.09003 * 109.46855 * 60.00676 * 15 13 3 37 37 H 1.08996 * 109.47257 * 300.00205 * 15 13 3 38 38 H 1.08002 * 125.08253 * 359.97074 * 20 19 17 39 39 H 1.08001 * 120.00921 * 0.25389 * 23 22 21 40 40 H 1.07997 * 119.66934 * 179.97438 * 24 23 22 41 41 H 1.08002 * 119.90251 * 179.97438 * 25 24 23 42 42 H 1.07998 * 120.18933 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2626 2.0717 -1.2687 5 6 3.6858 1.8348 -1.7038 6 1 4.3427 1.2300 -1.0963 7 6 4.1491 2.3894 -2.8781 8 7 3.3492 3.1255 -3.6182 9 14 5.9136 2.0964 -3.4170 10 1 6.1417 0.6396 -3.5937 11 1 6.1610 2.7963 -4.7032 12 1 6.8408 2.6207 -2.3823 13 6 2.2431 2.0164 1.1671 14 8 2.6470 3.1600 1.1671 15 6 1.9913 1.3063 2.4722 16 8 2.3066 2.1957 3.5758 17 6 2.1349 1.7099 4.8217 18 8 1.7331 0.5736 4.9810 19 6 2.4334 2.5536 5.9868 20 6 2.8878 3.8369 5.9777 21 8 3.0425 4.2726 7.2331 22 6 2.7054 3.3215 8.1286 23 6 2.6928 3.2869 9.5177 24 6 2.2875 2.1448 10.1746 25 6 1.8904 1.0230 9.4626 26 6 1.8962 1.0385 8.0842 27 6 2.3033 2.1858 7.4111 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3632 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 1.5818 1.6876 -2.0284 34 1 2.0957 3.1410 -1.1385 35 1 3.6752 3.5159 -4.4442 36 1 2.6212 0.4186 2.5302 37 1 0.9433 1.0126 2.5298 38 1 3.0936 4.4164 5.0898 39 1 2.9962 4.1561 10.0825 40 1 2.2801 2.1231 11.2543 41 1 1.5755 0.1344 9.9896 42 1 1.5864 0.1649 7.5299 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000733598385.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:27 Heat of formation + Delta-G solvation = -104.330104 kcal Electronic energy + Delta-G solvation = -27161.193969 eV Core-core repulsion = 23072.546348 eV Total energy + Delta-G solvation = -4088.647621 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -43.74670 -41.62360 -40.49525 -38.92186 -37.60768 -36.97665 -34.94430 -34.17909 -31.77624 -31.48633 -31.00258 -30.28405 -28.42348 -25.63021 -24.77180 -24.35526 -23.97841 -23.29390 -21.54688 -20.29127 -19.38584 -18.67618 -18.53978 -18.00497 -17.93043 -17.77973 -17.30266 -17.13519 -16.78247 -16.44656 -16.14826 -15.80632 -15.15421 -14.88642 -14.77260 -14.69001 -14.52349 -14.08332 -13.95197 -13.68908 -13.60449 -13.34582 -13.28699 -13.09592 -12.90726 -12.66872 -12.52650 -12.23537 -12.11292 -12.07756 -11.84946 -11.81371 -11.74124 -11.37098 -10.75442 -10.64479 -9.74453 -9.55756 -9.39505 -8.23367 -6.37785 -0.41539 0.20038 0.49115 1.07611 1.37198 1.41195 1.48183 1.55036 1.59514 1.77738 2.30009 2.43502 2.68576 3.06712 3.25130 3.38877 3.41552 3.70935 3.81239 3.94635 4.04064 4.13163 4.14558 4.29321 4.35182 4.37087 4.50380 4.58066 4.71555 4.87450 4.93788 5.02123 5.02936 5.08036 5.18020 5.20561 5.34113 5.35354 5.45573 5.51854 5.53391 5.78713 5.96726 6.03731 6.46572 6.61251 6.71005 7.19460 7.35691 8.83837 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.019090 B = 0.002407 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.384235 B =11629.760320 C =12457.624223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.093 3.907 3 N -0.594 5.594 4 C 0.263 3.737 5 C -0.545 4.545 6 H 0.054 0.946 7 C 0.009 3.991 8 N -0.927 5.927 9 Si 0.967 3.033 10 H -0.260 1.260 11 H -0.279 1.279 12 H -0.278 1.278 13 C 0.501 3.499 14 O -0.575 6.575 15 C 0.064 3.936 16 O -0.342 6.342 17 C 0.542 3.458 18 O -0.524 6.524 19 C -0.261 4.261 20 C 0.131 3.869 21 O -0.180 6.180 22 C 0.022 3.978 23 C -0.101 4.101 24 C -0.087 4.087 25 C -0.119 4.119 26 C -0.092 4.092 27 C -0.113 4.113 28 H 0.097 0.903 29 H 0.056 0.944 30 H 0.045 0.955 31 H 0.082 0.918 32 H 0.097 0.903 33 H 0.030 0.970 34 H 0.001 0.999 35 H 0.268 0.732 36 H 0.118 0.882 37 H 0.123 0.877 38 H 0.252 0.748 39 H 0.162 0.838 40 H 0.177 0.823 41 H 0.161 0.839 42 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.574 -5.439 26.982 27.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.029 4.029 3 N -0.327 5.327 4 C 0.142 3.858 5 C -0.584 4.584 6 H 0.072 0.928 7 C -0.190 4.190 8 N -0.566 5.566 9 Si 0.791 3.209 10 H -0.185 1.185 11 H -0.204 1.204 12 H -0.204 1.204 13 C 0.288 3.712 14 O -0.455 6.455 15 C -0.012 4.012 16 O -0.258 6.258 17 C 0.389 3.611 18 O -0.415 6.415 19 C -0.264 4.264 20 C 0.062 3.938 21 O -0.078 6.078 22 C -0.023 4.023 23 C -0.119 4.119 24 C -0.104 4.104 25 C -0.137 4.137 26 C -0.111 4.111 27 C -0.114 4.114 28 H 0.116 0.884 29 H 0.076 0.924 30 H 0.064 0.936 31 H 0.101 0.899 32 H 0.116 0.884 33 H 0.048 0.952 34 H 0.019 0.981 35 H 0.077 0.923 36 H 0.136 0.864 37 H 0.140 0.860 38 H 0.268 0.732 39 H 0.179 0.821 40 H 0.194 0.806 41 H 0.178 0.822 42 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -4.419 -4.842 26.906 27.693 hybrid contribution 0.688 -0.077 -1.366 1.532 sum -3.731 -4.919 25.540 26.275 Atomic orbital electron populations 1.22178 0.94327 1.03788 1.01856 1.21871 0.95558 0.81004 1.04422 1.48195 1.63543 1.15250 1.05679 1.18795 0.95572 0.91708 0.79684 1.21666 0.97819 1.32248 1.06625 0.92750 1.25837 1.02340 0.94453 0.96405 1.70036 1.37783 1.34019 1.14793 0.85484 0.79066 0.79011 0.77354 1.18496 1.20359 1.20352 1.20449 0.78391 0.86654 0.85690 1.90671 1.47100 1.19992 1.87716 1.22858 1.04825 0.91990 0.81571 1.86582 1.79356 1.45365 1.14507 1.20059 0.73823 0.85095 0.82112 1.90802 1.44201 1.19742 1.86748 1.19983 1.18728 0.96886 0.90796 1.25346 0.89306 0.92958 0.86162 1.83912 1.69785 1.39455 1.14671 1.20000 1.03378 0.86417 0.92522 1.20456 1.02701 1.01538 0.87170 1.21469 0.96152 0.90757 1.02048 1.21527 0.99426 1.00394 0.92371 1.20817 0.98621 0.96255 0.95357 1.19564 1.04958 0.96917 0.89988 0.88421 0.92449 0.93619 0.89947 0.88445 0.95235 0.98104 0.92342 0.86408 0.85958 0.73242 0.82058 0.80559 0.82164 0.85637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.99 10.24 71.98 0.74 -3.26 16 2 C 0.09 2.79 5.93 86.38 0.51 3.30 16 3 N -0.59 -24.94 2.46 -826.16 -2.03 -26.97 16 4 C 0.26 14.02 5.16 85.63 0.44 14.46 16 5 C -0.55 -31.12 9.39 25.60 0.24 -30.88 16 6 H 0.05 3.06 7.81 -2.91 -0.02 3.04 16 7 C 0.01 0.51 5.46 84.66 0.46 0.97 16 8 N -0.93 -55.65 13.29 21.45 0.28 -55.37 16 9 Si 0.97 44.66 29.54 68.60 2.03 46.68 16 10 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 11 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 12 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 13 C 0.50 21.17 7.75 87.66 0.68 21.85 16 14 O -0.58 -30.11 16.08 15.76 0.25 -29.85 16 15 C 0.06 2.01 4.51 71.24 0.32 2.34 16 16 O -0.34 -11.30 9.60 -50.93 -0.49 -11.79 16 17 C 0.54 16.52 7.94 70.09 0.56 17.08 16 18 O -0.52 -17.04 16.08 19.60 0.32 -16.73 16 19 C -0.26 -6.94 6.30 -19.00 -0.12 -7.06 16 20 C 0.13 2.81 11.82 67.33 0.80 3.61 16 21 O -0.18 -3.77 10.53 -3.63 -0.04 -3.81 16 22 C 0.02 0.47 7.39 22.93 0.17 0.64 16 23 C -0.10 -1.38 10.06 22.35 0.22 -1.16 16 24 C -0.09 -0.89 10.01 22.28 0.22 -0.67 16 25 C -0.12 -1.60 10.04 22.28 0.22 -1.38 16 26 C -0.09 -1.95 9.88 22.39 0.22 -1.73 16 27 C -0.11 -2.77 6.29 -20.09 -0.13 -2.90 16 28 H 0.10 1.75 8.14 -2.38 -0.02 1.73 16 29 H 0.06 1.33 7.22 -2.39 -0.02 1.31 16 30 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.08 2.57 8.07 -2.38 -0.02 2.55 16 32 H 0.10 2.29 6.44 -2.39 -0.02 2.27 16 33 H 0.03 1.59 8.07 -2.38 -0.02 1.57 16 34 H 0.00 0.05 7.42 -2.39 -0.02 0.03 16 35 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 36 H 0.12 3.22 7.40 -2.39 -0.02 3.20 16 37 H 0.12 3.20 7.18 -2.39 -0.02 3.19 16 38 H 0.25 4.11 8.06 -2.91 -0.02 4.08 16 39 H 0.16 1.30 8.06 -2.91 -0.02 1.28 16 40 H 0.18 0.43 8.06 -2.91 -0.02 0.41 16 41 H 0.16 1.18 8.06 -2.91 -0.02 1.16 16 42 H 0.13 2.83 7.54 -2.91 -0.02 2.81 16 Total: -1.00 -79.80 371.02 6.94 -72.86 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: 1.05 Total: 9.74 kcal Atomic # 6 Polarization: 9.66 SS G_CDS: 5.56 Total: 15.22 kcal Atomic # 7 Polarization: -80.59 SS G_CDS: -1.74 Total: -82.33 kcal Atomic # 8 Polarization: -62.22 SS G_CDS: 0.04 Total: -62.18 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.68 kcal Total: -79.80 6.94 -72.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733598385.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.466 kcal (2) G-P(sol) polarization free energy of solvation -79.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds