Wall clock time and date at job start Tue Mar 31 2020 18:01:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.46539 * 2 1 4 4 O 1.45199 * 109.46569 * 119.99429 * 2 1 3 5 5 C 1.34818 * 117.00204 * 270.00158 * 4 2 1 6 6 O 1.21564 * 119.99810 * 0.02562 * 5 4 2 7 7 C 1.46919 * 119.99771 * 180.02562 * 5 4 2 8 8 C 1.36143 * 127.15107 * 0.02562 * 7 5 4 9 9 O 1.33783 * 109.83791 * 180.02562 * 8 7 5 10 10 C 1.34913 * 111.36447 * 0.02562 * 9 8 7 11 11 C 1.38966 * 133.09543 * 180.02562 * 10 9 8 12 12 C 1.37847 * 119.97026 * 179.97438 * 11 10 9 13 13 C 1.38678 * 120.65181 * 0.02562 * 12 11 10 14 14 C 1.37852 * 120.20322 * 359.95503 * 13 12 11 15 15 C 1.39103 * 119.62490 * 359.73684 * 14 13 12 16 16 C 1.50698 * 109.47255 * 239.99878 * 2 1 3 17 17 O 1.21281 * 119.99558 * 248.56764 * 16 2 1 18 18 N 1.34770 * 120.00076 * 68.56647 * 16 2 1 19 19 C 1.46498 * 119.99925 * 4.58498 * 18 16 2 20 20 C 1.46499 * 120.00078 * 184.58089 * 18 16 2 21 21 C 1.50696 * 109.47081 * 89.99979 * 20 18 16 22 22 H 1.08001 * 120.00346 * 0.02562 * 21 20 18 23 23 C 1.37881 * 120.00140 * 179.97438 * 21 20 18 24 24 N 1.31509 * 120.00168 * 179.97438 * 23 21 20 25 25 Si 1.86798 * 119.99914 * 0.02562 * 23 21 20 26 26 H 1.48507 * 109.47132 * 89.99541 * 25 23 21 27 27 H 1.48499 * 109.47117 * 209.99703 * 25 23 21 28 28 H 1.48506 * 109.47209 * 329.99874 * 25 23 21 29 29 H 1.09005 * 109.47353 * 187.14944 * 1 2 3 30 30 H 1.08998 * 109.47746 * 307.15121 * 1 2 3 31 31 H 1.09005 * 109.47242 * 67.15683 * 1 2 3 32 32 H 1.08004 * 125.08416 * 359.97438 * 8 7 5 33 33 H 1.07991 * 120.01966 * 359.94963 * 11 10 9 34 34 H 1.08005 * 119.67609 * 179.97438 * 12 11 10 35 35 H 1.08006 * 119.89999 * 179.97438 * 13 12 11 36 36 H 1.07991 * 120.18695 * 180.02562 * 14 13 12 37 37 H 1.09004 * 109.47407 * 86.11863 * 19 18 16 38 38 H 1.09010 * 109.46983 * 206.11361 * 19 18 16 39 39 H 1.08998 * 109.47293 * 326.11775 * 19 18 16 40 40 H 1.08998 * 109.47684 * 210.00293 * 20 18 16 41 41 H 1.09010 * 109.47140 * 330.00360 * 20 18 16 42 42 H 0.96999 * 120.00255 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 8 2.0139 -0.6844 1.1857 5 6 2.2178 0.0674 2.2860 6 8 1.9967 1.2624 2.2552 7 6 2.7073 -0.5575 3.5223 8 6 3.0008 -1.8724 3.7185 9 8 3.4186 -2.0616 4.9752 10 6 3.4251 -0.9054 5.6704 11 6 3.7685 -0.5860 6.9785 12 6 3.6710 0.7171 7.4175 13 6 3.2315 1.7191 6.5655 14 6 2.8869 1.4214 5.2644 15 6 2.9876 0.1109 4.8090 16 6 2.0324 -0.7104 -1.2304 17 8 2.5964 -1.7790 -1.1258 18 7 1.8549 -0.1583 -2.4470 19 6 1.2645 1.1771 -2.5662 20 6 2.2525 -0.8936 -3.6501 21 6 1.0936 -1.7250 -4.1366 22 1 0.1547 -1.7072 -3.6032 23 6 1.2316 -2.5077 -5.2633 24 7 0.2204 -3.2336 -5.6876 25 14 2.8553 -2.5380 -6.1863 26 1 3.7177 -3.6144 -5.6358 27 1 2.6012 -2.7953 -7.6266 28 1 3.5380 -1.2284 -6.0303 29 1 -0.3634 -1.0197 0.1279 30 1 -0.3634 0.6206 0.8190 31 1 -0.3634 0.3990 -0.9471 32 1 2.9093 -2.6470 2.9715 33 1 4.1112 -1.3583 7.6511 34 1 3.9387 0.9599 8.4353 35 1 3.1594 2.7360 6.9223 36 1 2.5451 2.2020 4.6010 37 1 2.0472 1.9301 -2.4732 38 1 0.7801 1.2747 -3.5379 39 1 0.5270 1.3202 -1.7765 40 1 2.5448 -0.1876 -4.4275 41 1 3.0943 -1.5454 -3.4161 42 1 0.3176 -3.7845 -6.4800 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000733599491.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:01:23 Heat of formation + Delta-G solvation = -72.115330 kcal Electronic energy + Delta-G solvation = -27518.336287 eV Core-core repulsion = 23431.085604 eV Total energy + Delta-G solvation = -4087.250684 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.95644 -40.53914 -38.99931 -38.24966 -36.39205 -35.06521 -33.42969 -32.78010 -31.68410 -30.77656 -29.82064 -28.35970 -26.31940 -25.17147 -24.01700 -23.53220 -22.61282 -22.00876 -20.42278 -18.91538 -18.47786 -17.69267 -17.01756 -16.92653 -16.71466 -16.53819 -16.08353 -15.86107 -15.65232 -15.04286 -14.72662 -14.45058 -14.20510 -14.02504 -13.79401 -13.29261 -13.14226 -12.84570 -12.66963 -12.47166 -12.36253 -12.30447 -12.27899 -11.85514 -11.54947 -11.39447 -11.36269 -10.93537 -10.77842 -10.69543 -10.54738 -10.54472 -10.19033 -9.59394 -9.07166 -9.05208 -8.64846 -8.63355 -7.82538 -6.13270 -4.12883 0.38436 0.91146 1.31817 2.18004 2.41241 2.77725 3.11537 3.26692 3.32674 3.34766 3.37993 3.74062 4.04713 4.27084 4.35795 4.44010 4.61763 4.70475 4.86836 4.92032 4.99630 5.02446 5.04325 5.10034 5.20205 5.38006 5.43431 5.65844 5.72106 5.75293 5.76607 5.82333 5.98164 6.02166 6.08914 6.18996 6.24586 6.33354 6.61683 6.67016 6.86970 7.20185 7.54172 7.65100 8.06891 8.40263 8.76763 8.89669 9.46310 10.99804 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.025243 B = 0.002430 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.940524 B =11518.044703 C =12046.288895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.076 3.924 3 H 0.106 0.894 4 O -0.324 6.324 5 C 0.539 3.461 6 O -0.506 6.506 7 C -0.227 4.227 8 C 0.112 3.888 9 O -0.180 6.180 10 C 0.043 3.957 11 C -0.102 4.102 12 C -0.095 4.095 13 C -0.130 4.130 14 C -0.065 4.065 15 C -0.088 4.088 16 C 0.513 3.487 17 O -0.521 6.521 18 N -0.591 5.591 19 C 0.066 3.934 20 C 0.216 3.784 21 C -0.532 4.532 22 H 0.076 0.924 23 C 0.073 3.927 24 N -0.895 5.895 25 Si 0.876 3.124 26 H -0.273 1.273 27 H -0.284 1.284 28 H -0.266 1.266 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.094 0.906 32 H 0.233 0.767 33 H 0.135 0.865 34 H 0.137 0.863 35 H 0.133 0.867 36 H 0.138 0.862 37 H 0.049 0.951 38 H 0.082 0.918 39 H 0.069 0.931 40 H 0.034 0.966 41 H 0.039 0.961 42 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.909 10.023 23.995 26.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.017 3.983 3 H 0.123 0.877 4 O -0.240 6.240 5 C 0.384 3.616 6 O -0.396 6.396 7 C -0.229 4.229 8 C 0.044 3.956 9 O -0.079 6.079 10 C -0.003 4.003 11 C -0.120 4.120 12 C -0.113 4.113 13 C -0.148 4.148 14 C -0.083 4.083 15 C -0.089 4.089 16 C 0.298 3.702 17 O -0.397 6.397 18 N -0.324 5.324 19 C -0.077 4.077 20 C 0.096 3.904 21 C -0.571 4.571 22 H 0.094 0.906 23 C -0.130 4.130 24 N -0.534 5.534 25 Si 0.703 3.297 26 H -0.198 1.198 27 H -0.210 1.210 28 H -0.190 1.190 29 H 0.096 0.904 30 H 0.089 0.911 31 H 0.112 0.888 32 H 0.249 0.751 33 H 0.153 0.847 34 H 0.155 0.845 35 H 0.151 0.849 36 H 0.156 0.844 37 H 0.068 0.932 38 H 0.101 0.899 39 H 0.087 0.913 40 H 0.052 0.948 41 H 0.057 0.943 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 5.169 9.424 23.967 26.267 hybrid contribution 0.537 0.101 -0.902 1.055 sum 5.705 9.526 23.065 25.598 Atomic orbital electron populations 1.22318 0.91889 1.04455 1.04214 1.22611 0.96127 0.97351 0.82172 0.87653 1.86656 1.76944 1.40975 1.19420 1.19811 0.74203 0.84808 0.82778 1.90811 1.48891 1.15614 1.84262 1.19921 1.15893 0.94081 0.93029 1.24994 0.89761 0.97415 0.83432 1.83912 1.69368 1.32816 1.21800 1.19577 1.03562 0.82832 0.94291 1.19964 1.03446 0.97557 0.91054 1.20971 0.98884 0.91351 1.00133 1.21139 1.00439 0.99899 0.93287 1.20716 0.97278 0.94494 0.95798 1.19335 1.03304 0.94970 0.91300 1.19759 0.80658 0.86020 0.83805 1.90687 1.41759 1.21410 1.85816 1.47716 1.61054 1.17381 1.06244 1.22021 0.97999 0.83652 1.04055 1.19742 0.97251 0.92238 0.81169 1.21306 0.98767 1.25720 1.11265 0.90629 1.24850 0.96516 0.94690 0.96894 1.69887 1.30876 1.28048 1.24540 0.86851 0.84361 0.79258 0.79227 1.19844 1.21013 1.19040 0.90449 0.91101 0.88797 0.75122 0.84670 0.84502 0.84927 0.84413 0.93246 0.89885 0.91291 0.94833 0.94295 0.92481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.42 9.14 37.16 0.34 -2.08 16 2 C 0.08 1.24 2.17 -27.88 -0.06 1.17 16 3 H 0.11 1.56 6.74 -51.93 -0.35 1.21 16 4 O -0.32 -5.30 9.27 -47.46 -0.44 -5.74 16 5 C 0.54 8.10 7.92 34.24 0.27 8.37 16 6 O -0.51 -8.16 15.54 -19.31 -0.30 -8.46 16 7 C -0.23 -2.94 6.30 -103.28 -0.65 -3.59 16 8 C 0.11 1.19 11.82 29.98 0.35 1.54 16 9 O -0.18 -1.92 10.53 5.38 0.06 -1.86 16 10 C 0.04 0.47 7.39 -38.57 -0.28 0.18 16 11 C -0.10 -0.83 10.06 -39.45 -0.40 -1.22 16 12 C -0.10 -0.65 10.01 -39.56 -0.40 -1.05 16 13 C -0.13 -1.02 10.04 -39.56 -0.40 -1.42 16 14 C -0.06 -0.69 9.88 -39.40 -0.39 -1.08 16 15 C -0.09 -1.07 6.29 -104.97 -0.66 -1.73 16 16 C 0.51 10.59 7.03 -10.99 -0.08 10.51 16 17 O -0.52 -12.86 16.08 -13.95 -0.22 -13.08 16 18 N -0.59 -12.00 2.86 -182.95 -0.52 -12.53 16 19 C 0.07 0.99 9.80 59.85 0.59 1.58 16 20 C 0.22 5.20 4.25 -5.20 -0.02 5.17 16 21 C -0.53 -14.95 9.94 -34.44 -0.34 -15.29 16 22 H 0.08 2.31 8.06 -52.49 -0.42 1.89 16 23 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 24 N -0.90 -27.17 13.96 55.43 0.77 -26.39 16 25 Si 0.88 21.26 27.47 -169.99 -4.67 16.59 16 26 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 27 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 28 H -0.27 -6.06 6.54 56.52 0.37 -5.69 16 29 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.09 1.26 5.46 -51.93 -0.28 0.97 16 32 H 0.23 1.85 8.06 -52.48 -0.42 1.42 16 33 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 34 H 0.14 0.52 8.06 -52.48 -0.42 0.10 16 35 H 0.13 0.70 8.06 -52.48 -0.42 0.28 16 36 H 0.14 1.50 7.54 -52.49 -0.40 1.10 16 37 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.08 1.25 8.04 -51.92 -0.42 0.83 16 39 H 0.07 0.87 4.31 -51.93 -0.22 0.65 16 40 H 0.03 0.76 7.13 -51.93 -0.37 0.39 16 41 H 0.04 1.00 6.79 -51.92 -0.35 0.65 16 42 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 362.99 15.07 5.47 5.47 Total: -1.00 -35.83 362.99 -7.02 -42.85 By element: Atomic # 1 Polarization: 5.02 SS G_CDS: -4.94 Total: 0.08 kcal Atomic # 6 Polarization: 5.30 SS G_CDS: -2.22 Total: 3.08 kcal Atomic # 7 Polarization: -39.17 SS G_CDS: 0.25 Total: -38.92 kcal Atomic # 8 Polarization: -28.24 SS G_CDS: -0.91 Total: -29.15 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -4.67 Total: 16.59 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -35.83 -7.02 -42.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733599491.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.266 kcal (2) G-P(sol) polarization free energy of solvation -35.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds