Wall clock time and date at job start Tue Mar 31 2020 18:01:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47303 * 2 1 4 4 O 1.45194 * 109.46903 * 240.00204 * 2 1 3 5 5 C 1.34830 * 116.99758 * 90.00185 * 4 2 1 6 6 O 1.21568 * 119.99955 * 359.97438 * 5 4 2 7 7 C 1.46917 * 119.99611 * 179.97438 * 5 4 2 8 8 C 1.36149 * 127.15341 * 0.02562 * 7 5 4 9 9 O 1.33768 * 109.83874 * 179.97438 * 8 7 5 10 10 C 1.34915 * 111.36923 * 359.97438 * 9 8 7 11 11 C 1.38967 * 133.10378 * 179.97438 * 10 9 8 12 12 C 1.37845 * 119.97643 * 179.97438 * 11 10 9 13 13 C 1.38680 * 120.65114 * 0.02562 * 12 11 10 14 14 C 1.37851 * 120.19660 * 359.97438 * 13 12 11 15 15 C 1.39098 * 119.63120 * 359.69328 * 14 13 12 16 16 C 1.50704 * 109.47292 * 120.00252 * 2 1 3 17 17 O 1.21281 * 119.99620 * 105.80431 * 16 2 1 18 18 N 1.34770 * 119.99916 * 285.80975 * 16 2 1 19 19 C 1.46500 * 120.00248 * 4.44544 * 18 16 2 20 20 C 1.46498 * 119.99836 * 184.17639 * 18 16 2 21 21 C 1.50700 * 109.47272 * 270.26961 * 20 18 16 22 22 H 1.08002 * 119.99718 * 0.02562 * 21 20 18 23 23 C 1.37879 * 120.00424 * 179.97438 * 21 20 18 24 24 N 1.31509 * 119.99606 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00080 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.46993 * 0.02562 * 25 23 21 27 27 H 1.48498 * 109.46763 * 120.00489 * 25 23 21 28 28 H 1.48495 * 109.47094 * 240.00122 * 25 23 21 29 29 H 1.09006 * 109.47291 * 172.32971 * 1 2 3 30 30 H 1.09007 * 109.47005 * 292.32564 * 1 2 3 31 31 H 1.09000 * 109.47518 * 52.32792 * 1 2 3 32 32 H 1.08000 * 125.07959 * 359.96006 * 8 7 5 33 33 H 1.08004 * 120.01238 * 359.97438 * 11 10 9 34 34 H 1.07996 * 119.67605 * 179.97438 * 12 11 10 35 35 H 1.07997 * 119.89950 * 180.02562 * 13 12 11 36 36 H 1.08006 * 120.18194 * 180.02562 * 14 13 12 37 37 H 1.09000 * 109.47558 * 268.28481 * 19 18 16 38 38 H 1.09004 * 109.47186 * 28.29140 * 19 18 16 39 39 H 1.09001 * 109.46945 * 148.28284 * 19 18 16 40 40 H 1.09004 * 109.47199 * 30.27559 * 20 18 16 41 41 H 1.09002 * 109.47107 * 150.27183 * 20 18 16 42 42 H 0.97006 * 120.00527 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0139 -0.6844 -1.1855 5 6 2.2179 0.0675 -2.2859 6 8 1.9968 1.2625 -2.2551 7 6 2.7074 -0.5574 -3.5222 8 6 3.0001 -1.8725 -3.7187 9 8 3.4182 -2.0617 -4.9752 10 6 3.4260 -0.9053 -5.6701 11 6 3.7702 -0.5856 -6.9780 12 6 3.6728 0.7175 -7.4169 13 6 3.2337 1.7196 -6.5648 14 6 2.8879 1.4216 -5.2641 15 6 2.9757 0.1088 -4.8127 16 6 2.0323 -0.7105 1.2304 17 8 2.5042 -1.8239 1.1375 18 7 1.9572 -0.1086 2.4340 19 6 1.2995 1.1942 2.5617 20 6 2.5280 -0.7600 3.6155 21 6 1.4834 -1.6331 4.2617 22 1 0.4934 -1.6968 3.8346 23 6 1.7917 -2.3514 5.3975 24 7 2.9972 -2.2742 5.9172 25 14 0.4970 -3.4342 6.1980 26 1 -0.7676 -3.3479 5.4244 27 1 0.9709 -4.8415 6.2158 28 1 0.2588 -2.9745 7.5897 29 1 -0.3634 -1.0185 -0.1372 30 1 -0.3633 0.3904 0.9507 31 1 -0.3634 0.6280 -0.8134 32 1 2.9085 -2.6471 -2.9717 33 1 4.1138 -1.3579 -7.6503 34 1 3.9420 0.9605 -8.4342 35 1 3.1617 2.7364 -6.9216 36 1 2.5456 2.2022 -4.6008 37 1 2.0381 1.9872 2.4446 38 1 0.5353 1.2926 1.7906 39 1 0.8355 1.2721 3.5449 40 1 3.3793 -1.3719 3.3174 41 1 2.8569 -0.0011 4.3255 42 1 3.2142 -2.7793 6.7165 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000733599493.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:01:26 Heat of formation + Delta-G solvation = -76.561182 kcal Electronic energy + Delta-G solvation = -27471.896217 eV Core-core repulsion = 23384.452747 eV Total energy + Delta-G solvation = -4087.443470 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.94449 -40.49817 -38.89058 -38.23775 -36.35271 -34.92536 -33.41584 -32.83174 -31.60962 -30.76340 -29.79914 -27.74554 -26.22259 -25.12791 -24.03602 -23.57185 -22.60873 -22.22844 -20.41308 -18.91436 -18.45673 -17.67348 -16.89617 -16.70456 -16.57853 -16.46469 -16.05647 -15.83320 -15.56610 -14.99975 -14.58328 -14.45359 -14.29413 -14.04606 -13.68359 -13.29872 -13.09012 -12.82870 -12.65769 -12.49456 -12.29464 -12.17387 -12.10605 -11.68095 -11.39273 -11.35597 -11.22846 -10.89498 -10.76898 -10.67951 -10.58858 -10.53233 -10.18640 -9.65380 -9.04052 -8.94212 -8.63540 -8.47207 -7.74952 -6.07745 -4.12533 0.39764 0.92344 1.33254 2.19924 2.43765 2.79509 3.21306 3.28089 3.35976 3.39217 3.40234 3.84287 4.06032 4.29272 4.41692 4.45289 4.62909 4.76213 4.90066 4.93826 5.00862 5.03975 5.09305 5.11273 5.27026 5.38874 5.45369 5.64317 5.72370 5.76500 5.83503 5.86451 5.99676 6.04908 6.10099 6.20439 6.24693 6.35646 6.68204 6.95951 7.35697 7.43747 7.67743 7.88146 8.17757 8.26488 8.81829 8.96603 9.52461 11.00507 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.025381 B = 0.002379 C = 0.002274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.905285 B =11767.625893 C =12312.089824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.074 3.926 3 H 0.105 0.895 4 O -0.325 6.325 5 C 0.538 3.462 6 O -0.506 6.506 7 C -0.226 4.226 8 C 0.112 3.888 9 O -0.180 6.180 10 C 0.043 3.957 11 C -0.102 4.102 12 C -0.095 4.095 13 C -0.130 4.130 14 C -0.065 4.065 15 C -0.088 4.088 16 C 0.508 3.492 17 O -0.518 6.518 18 N -0.596 5.596 19 C 0.067 3.933 20 C 0.247 3.753 21 C -0.526 4.526 22 H 0.059 0.941 23 C 0.060 3.940 24 N -0.894 5.894 25 Si 0.899 3.101 26 H -0.273 1.273 27 H -0.282 1.282 28 H -0.283 1.283 29 H 0.075 0.925 30 H 0.092 0.908 31 H 0.070 0.930 32 H 0.233 0.767 33 H 0.135 0.865 34 H 0.137 0.863 35 H 0.133 0.867 36 H 0.138 0.862 37 H 0.048 0.952 38 H 0.066 0.934 39 H 0.079 0.921 40 H 0.044 0.956 41 H 0.036 0.964 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.249 7.852 -24.526 25.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.016 3.984 3 H 0.123 0.877 4 O -0.240 6.240 5 C 0.383 3.617 6 O -0.396 6.396 7 C -0.229 4.229 8 C 0.044 3.956 9 O -0.079 6.079 10 C -0.003 4.003 11 C -0.120 4.120 12 C -0.113 4.113 13 C -0.148 4.148 14 C -0.083 4.083 15 C -0.089 4.089 16 C 0.292 3.708 17 O -0.394 6.394 18 N -0.329 5.329 19 C -0.077 4.077 20 C 0.128 3.872 21 C -0.565 4.565 22 H 0.077 0.923 23 C -0.142 4.142 24 N -0.533 5.533 25 Si 0.727 3.273 26 H -0.198 1.198 27 H -0.208 1.208 28 H -0.210 1.210 29 H 0.094 0.906 30 H 0.110 0.890 31 H 0.089 0.911 32 H 0.249 0.751 33 H 0.153 0.847 34 H 0.155 0.845 35 H 0.151 0.849 36 H 0.156 0.844 37 H 0.067 0.933 38 H 0.084 0.916 39 H 0.098 0.902 40 H 0.062 0.938 41 H 0.054 0.946 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.862 7.295 -24.486 25.564 hybrid contribution -0.792 -0.352 0.852 1.216 sum -1.655 6.943 -23.634 24.688 Atomic orbital electron populations 1.22312 0.92218 1.04221 1.04075 1.22671 0.95960 0.97474 0.82342 0.87731 1.86657 1.76940 1.40982 1.19440 1.19819 0.74217 0.84821 0.82796 1.90812 1.48887 1.15608 1.84268 1.19930 1.15950 0.94121 0.92902 1.24988 0.89857 0.97400 0.83394 1.83907 1.69362 1.32795 1.21837 1.19577 1.03420 0.82899 0.94364 1.19963 1.03490 0.97556 0.91021 1.20968 0.98889 0.91347 1.00136 1.21136 1.00474 0.99905 0.93255 1.20718 0.97288 0.94431 0.95836 1.19338 1.03271 0.94983 0.91324 1.19752 0.80657 0.86585 0.83780 1.90698 1.44834 1.18310 1.85556 1.48078 1.56532 1.19833 1.08464 1.21986 0.97123 0.85038 1.03561 1.19361 0.94747 0.92921 0.80172 1.21445 0.98143 1.26839 1.10037 0.92297 1.24945 0.95626 0.96658 0.96940 1.69937 1.19290 1.42045 1.22069 0.86422 0.81564 0.80402 0.78915 1.19785 1.20849 1.20961 0.90588 0.88998 0.91127 0.75126 0.84676 0.84509 0.84930 0.84410 0.93326 0.91554 0.90225 0.93806 0.94571 0.92712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.34 9.15 37.15 0.34 -2.00 16 2 C 0.07 1.22 2.17 -27.88 -0.06 1.16 16 3 H 0.10 1.61 6.71 -51.93 -0.35 1.26 16 4 O -0.32 -5.37 9.30 -47.41 -0.44 -5.81 16 5 C 0.54 8.20 7.92 34.24 0.27 8.47 16 6 O -0.51 -8.28 15.54 -19.32 -0.30 -8.58 16 7 C -0.23 -2.97 6.30 -103.28 -0.65 -3.62 16 8 C 0.11 1.20 11.82 29.98 0.35 1.55 16 9 O -0.18 -1.94 10.52 5.41 0.06 -1.88 16 10 C 0.04 0.47 7.39 -38.57 -0.28 0.19 16 11 C -0.10 -0.84 10.06 -39.45 -0.40 -1.23 16 12 C -0.10 -0.66 10.01 -39.56 -0.40 -1.06 16 13 C -0.13 -1.03 10.04 -39.56 -0.40 -1.43 16 14 C -0.06 -0.70 9.88 -39.40 -0.39 -1.09 16 15 C -0.09 -1.08 6.29 -104.97 -0.66 -1.74 16 16 C 0.51 10.75 7.00 -10.99 -0.08 10.67 16 17 O -0.52 -13.19 16.19 -13.67 -0.22 -13.41 16 18 N -0.60 -12.56 2.86 -182.95 -0.52 -13.08 16 19 C 0.07 1.04 9.86 59.85 0.59 1.63 16 20 C 0.25 6.38 5.13 -5.19 -0.03 6.36 16 21 C -0.53 -14.72 9.38 -34.44 -0.32 -15.04 16 22 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 23 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 24 N -0.89 -26.37 13.29 55.43 0.74 -25.63 16 25 Si 0.90 21.68 29.54 -169.99 -5.02 16.66 16 26 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 27 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 28 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 29 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 30 H 0.09 1.17 5.52 -51.93 -0.29 0.88 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.23 1.87 8.06 -52.49 -0.42 1.44 16 33 H 0.14 0.79 8.06 -52.48 -0.42 0.36 16 34 H 0.14 0.53 8.06 -52.49 -0.42 0.11 16 35 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 36 H 0.14 1.52 7.54 -52.48 -0.40 1.12 16 37 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.07 0.85 4.21 -51.93 -0.22 0.63 16 39 H 0.08 1.25 8.08 -51.93 -0.42 0.83 16 40 H 0.04 1.28 7.49 -51.93 -0.39 0.89 16 41 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 42 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 366.82 15.07 5.53 5.53 Total: -1.00 -35.31 366.82 -7.37 -42.68 By element: Atomic # 1 Polarization: 4.08 SS G_CDS: -4.98 Total: -0.90 kcal Atomic # 6 Polarization: 6.62 SS G_CDS: -2.20 Total: 4.42 kcal Atomic # 7 Polarization: -38.92 SS G_CDS: 0.21 Total: -38.71 kcal Atomic # 8 Polarization: -28.77 SS G_CDS: -0.91 Total: -29.68 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -35.31 -7.37 -42.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733599493.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.877 kcal (2) G-P(sol) polarization free energy of solvation -35.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds