Wall clock time and date at job start Tue Mar 31 2020 18:01:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47303 * 2 1 4 4 O 1.45194 * 109.46903 * 240.00204 * 2 1 3 5 5 C 1.34830 * 116.99758 * 90.00185 * 4 2 1 6 6 O 1.21568 * 119.99955 * 359.97438 * 5 4 2 7 7 C 1.46917 * 119.99611 * 179.97438 * 5 4 2 8 8 C 1.36149 * 127.15341 * 0.02562 * 7 5 4 9 9 O 1.33768 * 109.83874 * 179.97438 * 8 7 5 10 10 C 1.34915 * 111.36923 * 359.97438 * 9 8 7 11 11 C 1.38967 * 133.10378 * 179.97438 * 10 9 8 12 12 C 1.37845 * 119.97643 * 179.97438 * 11 10 9 13 13 C 1.38680 * 120.65114 * 0.02562 * 12 11 10 14 14 C 1.37851 * 120.19660 * 359.97438 * 13 12 11 15 15 C 1.39098 * 119.63120 * 359.69328 * 14 13 12 16 16 C 1.50704 * 109.47292 * 120.00252 * 2 1 3 17 17 O 1.21281 * 119.99620 * 105.80431 * 16 2 1 18 18 N 1.34770 * 119.99916 * 285.80975 * 16 2 1 19 19 C 1.46500 * 120.00248 * 4.44544 * 18 16 2 20 20 C 1.46498 * 119.99836 * 184.17639 * 18 16 2 21 21 C 1.50700 * 109.47272 * 270.26961 * 20 18 16 22 22 H 1.08002 * 119.99718 * 0.02562 * 21 20 18 23 23 C 1.37879 * 120.00424 * 179.97438 * 21 20 18 24 24 N 1.31509 * 119.99606 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00080 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.46993 * 0.02562 * 25 23 21 27 27 H 1.48498 * 109.46763 * 120.00489 * 25 23 21 28 28 H 1.48495 * 109.47094 * 240.00122 * 25 23 21 29 29 H 1.09006 * 109.47291 * 172.32971 * 1 2 3 30 30 H 1.09007 * 109.47005 * 292.32564 * 1 2 3 31 31 H 1.09000 * 109.47518 * 52.32792 * 1 2 3 32 32 H 1.08000 * 125.07959 * 359.96006 * 8 7 5 33 33 H 1.08004 * 120.01238 * 359.97438 * 11 10 9 34 34 H 1.07996 * 119.67605 * 179.97438 * 12 11 10 35 35 H 1.07997 * 119.89950 * 180.02562 * 13 12 11 36 36 H 1.08006 * 120.18194 * 180.02562 * 14 13 12 37 37 H 1.09000 * 109.47558 * 268.28481 * 19 18 16 38 38 H 1.09004 * 109.47186 * 28.29140 * 19 18 16 39 39 H 1.09001 * 109.46945 * 148.28284 * 19 18 16 40 40 H 1.09004 * 109.47199 * 30.27559 * 20 18 16 41 41 H 1.09002 * 109.47107 * 150.27183 * 20 18 16 42 42 H 0.97006 * 120.00527 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0139 -0.6844 -1.1855 5 6 2.2179 0.0675 -2.2859 6 8 1.9968 1.2625 -2.2551 7 6 2.7074 -0.5574 -3.5222 8 6 3.0001 -1.8725 -3.7187 9 8 3.4182 -2.0617 -4.9752 10 6 3.4260 -0.9053 -5.6701 11 6 3.7702 -0.5856 -6.9780 12 6 3.6728 0.7175 -7.4169 13 6 3.2337 1.7196 -6.5648 14 6 2.8879 1.4216 -5.2641 15 6 2.9757 0.1088 -4.8127 16 6 2.0323 -0.7105 1.2304 17 8 2.5042 -1.8239 1.1375 18 7 1.9572 -0.1086 2.4340 19 6 1.2995 1.1942 2.5617 20 6 2.5280 -0.7600 3.6155 21 6 1.4834 -1.6331 4.2617 22 1 0.4934 -1.6968 3.8346 23 6 1.7917 -2.3514 5.3975 24 7 2.9972 -2.2742 5.9172 25 14 0.4970 -3.4342 6.1980 26 1 -0.7676 -3.3479 5.4244 27 1 0.9709 -4.8415 6.2158 28 1 0.2588 -2.9745 7.5897 29 1 -0.3634 -1.0185 -0.1372 30 1 -0.3633 0.3904 0.9507 31 1 -0.3634 0.6280 -0.8134 32 1 2.9085 -2.6471 -2.9717 33 1 4.1138 -1.3579 -7.6503 34 1 3.9420 0.9605 -8.4342 35 1 3.1617 2.7364 -6.9216 36 1 2.5456 2.2022 -4.6008 37 1 2.0381 1.9872 2.4446 38 1 0.5353 1.2926 1.7906 39 1 0.8355 1.2721 3.5449 40 1 3.3793 -1.3719 3.3174 41 1 2.8569 -0.0011 4.3255 42 1 3.2142 -2.7793 6.7165 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000733599493.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:01:25 Heat of formation + Delta-G solvation = -97.424680 kcal Electronic energy + Delta-G solvation = -27472.800926 eV Core-core repulsion = 23384.452747 eV Total energy + Delta-G solvation = -4088.348179 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.75145 -41.80798 -40.46424 -38.92517 -37.63337 -36.70386 -34.91149 -34.24088 -32.98786 -31.46555 -30.57934 -29.63872 -27.70140 -26.34051 -25.55682 -24.48668 -23.76184 -23.28320 -21.49652 -20.48889 -19.43694 -18.70519 -18.57172 -18.02742 -17.84702 -17.61868 -17.13466 -17.01742 -16.76859 -16.46308 -16.16705 -15.87960 -15.15122 -14.93711 -14.84844 -14.67939 -14.36069 -14.13145 -13.83114 -13.68535 -13.62656 -13.36408 -13.34501 -13.06780 -12.91696 -12.88859 -12.65576 -12.38288 -12.21117 -12.10208 -11.99481 -11.81796 -11.68326 -11.37438 -10.65957 -10.64367 -9.74756 -9.53895 -9.39837 -8.23597 -6.37828 -0.41904 0.19748 0.48775 1.08150 1.37146 1.39581 1.50824 1.53670 1.59415 1.77414 2.29682 2.42288 2.68287 3.06672 3.24594 3.34039 3.39491 3.69387 3.70709 3.81114 3.95719 4.10990 4.20607 4.28801 4.34671 4.49889 4.52543 4.58099 4.64450 4.72809 4.84896 4.92595 5.02499 5.09997 5.12336 5.17535 5.20625 5.33921 5.45312 5.50596 5.51787 5.76663 5.96419 6.02656 6.46131 6.59663 6.70872 7.18021 7.35060 8.84189 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.025381 B = 0.002379 C = 0.002274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.905285 B =11767.625893 C =12312.089824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.083 3.917 3 H 0.120 0.880 4 O -0.337 6.337 5 C 0.540 3.460 6 O -0.523 6.523 7 C -0.261 4.261 8 C 0.131 3.869 9 O -0.179 6.179 10 C 0.023 3.977 11 C -0.100 4.100 12 C -0.087 4.087 13 C -0.119 4.119 14 C -0.092 4.092 15 C -0.114 4.114 16 C 0.501 3.499 17 O -0.573 6.573 18 N -0.600 5.600 19 C 0.060 3.940 20 C 0.259 3.741 21 C -0.540 4.540 22 H 0.056 0.944 23 C 0.007 3.993 24 N -0.929 5.929 25 Si 0.969 3.031 26 H -0.266 1.266 27 H -0.283 1.283 28 H -0.270 1.270 29 H 0.069 0.931 30 H 0.104 0.896 31 H 0.092 0.908 32 H 0.252 0.748 33 H 0.162 0.838 34 H 0.177 0.823 35 H 0.161 0.839 36 H 0.125 0.875 37 H 0.072 0.928 38 H 0.098 0.902 39 H 0.079 0.921 40 H -0.001 1.001 41 H 0.031 0.969 42 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.436 8.625 -26.751 28.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.025 3.975 3 H 0.137 0.863 4 O -0.254 6.254 5 C 0.387 3.613 6 O -0.414 6.414 7 C -0.264 4.264 8 C 0.062 3.938 9 O -0.078 6.078 10 C -0.023 4.023 11 C -0.118 4.118 12 C -0.104 4.104 13 C -0.137 4.137 14 C -0.111 4.111 15 C -0.114 4.114 16 C 0.287 3.713 17 O -0.453 6.453 18 N -0.332 5.332 19 C -0.082 4.082 20 C 0.139 3.861 21 C -0.579 4.579 22 H 0.075 0.925 23 C -0.192 4.192 24 N -0.568 5.568 25 Si 0.793 3.207 26 H -0.190 1.190 27 H -0.209 1.209 28 H -0.195 1.195 29 H 0.088 0.912 30 H 0.122 0.878 31 H 0.111 0.889 32 H 0.268 0.732 33 H 0.180 0.820 34 H 0.195 0.805 35 H 0.178 0.822 36 H 0.143 0.857 37 H 0.091 0.909 38 H 0.117 0.883 39 H 0.097 0.903 40 H 0.017 0.983 41 H 0.049 0.951 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.069 8.122 -26.731 28.014 hybrid contribution -0.341 -0.538 1.420 1.556 sum -2.410 7.584 -25.311 26.532 Atomic orbital electron populations 1.22315 0.89716 1.04495 1.05598 1.22555 0.97588 0.96923 0.80418 0.86272 1.86657 1.77348 1.41590 1.19765 1.20117 0.73686 0.84669 0.82793 1.90781 1.49963 1.16168 1.84486 1.20000 1.18303 0.95412 0.92688 1.25336 0.87800 0.97064 0.83618 1.83907 1.69124 1.33036 1.21713 1.19999 1.04563 0.82385 0.95351 1.20458 1.02309 0.98951 0.90127 1.21472 0.97014 0.90340 1.01591 1.21528 0.98485 1.01686 0.92019 1.20815 0.99235 0.93749 0.97263 1.19567 1.04521 0.96092 0.91267 1.20574 0.79542 0.86133 0.85005 1.90658 1.47214 1.20886 1.86522 1.48064 1.56419 1.21430 1.07312 1.22307 0.98330 0.82729 1.04795 1.18866 0.93320 0.92329 0.81613 1.21698 0.98297 1.27473 1.10388 0.92549 1.25868 0.97814 0.97985 0.97569 1.70053 1.21198 1.42965 1.22621 0.85343 0.78861 0.78076 0.78383 1.18983 1.20850 1.19467 0.91226 0.87772 0.88920 0.73213 0.82029 0.80539 0.82172 0.85684 0.90944 0.88343 0.90261 0.98270 0.95075 0.92371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.26 9.15 71.98 0.66 -3.60 16 2 C 0.08 2.73 2.17 29.85 0.06 2.79 16 3 H 0.12 3.55 6.71 -2.39 -0.02 3.53 16 4 O -0.34 -11.35 9.30 -51.14 -0.48 -11.82 16 5 C 0.54 16.78 7.92 70.09 0.55 17.34 16 6 O -0.52 -17.27 15.54 19.61 0.30 -16.97 16 7 C -0.26 -7.02 6.30 -18.99 -0.12 -7.14 16 8 C 0.13 2.81 11.82 67.33 0.80 3.61 16 9 O -0.18 -3.77 10.52 -3.54 -0.04 -3.81 16 10 C 0.02 0.47 7.39 22.93 0.17 0.64 16 11 C -0.10 -1.39 10.06 22.35 0.22 -1.16 16 12 C -0.09 -0.90 10.01 22.28 0.22 -0.68 16 13 C -0.12 -1.63 10.04 22.28 0.22 -1.40 16 14 C -0.09 -1.97 9.88 22.38 0.22 -1.75 16 15 C -0.11 -2.80 6.29 -20.09 -0.13 -2.93 16 16 C 0.50 21.69 7.00 87.66 0.61 22.31 16 17 O -0.57 -30.58 16.19 15.35 0.25 -30.33 16 18 N -0.60 -25.69 2.86 -851.13 -2.43 -28.12 16 19 C 0.06 1.78 9.86 127.77 1.26 3.04 16 20 C 0.26 13.97 5.13 85.63 0.44 14.41 16 21 C -0.54 -30.85 9.38 25.60 0.24 -30.61 16 22 H 0.06 3.18 7.81 -2.91 -0.02 3.15 16 23 C 0.01 0.38 5.46 84.66 0.46 0.84 16 24 N -0.93 -55.92 13.29 21.45 0.28 -55.64 16 25 Si 0.97 44.65 29.54 68.60 2.03 46.67 16 26 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 27 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 28 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 29 H 0.07 1.91 8.14 -2.38 -0.02 1.89 16 30 H 0.10 2.41 5.52 -2.38 -0.01 2.40 16 31 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 32 H 0.25 4.07 8.06 -2.91 -0.02 4.05 16 33 H 0.16 1.31 8.06 -2.91 -0.02 1.28 16 34 H 0.18 0.45 8.06 -2.91 -0.02 0.42 16 35 H 0.16 1.21 8.06 -2.91 -0.02 1.19 16 36 H 0.13 2.87 7.54 -2.91 -0.02 2.84 16 37 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.10 2.29 4.21 -2.39 -0.01 2.28 16 39 H 0.08 2.39 8.08 -2.39 -0.02 2.37 16 40 H 0.00 -0.05 7.49 -2.38 -0.02 -0.07 16 41 H 0.03 1.68 8.07 -2.39 -0.02 1.66 16 42 H 0.27 15.05 8.31 -92.70 -0.77 14.28 16 Total: -1.00 -80.47 366.82 6.88 -73.59 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: 1.06 Total: 10.72 kcal Atomic # 6 Polarization: 9.80 SS G_CDS: 5.91 Total: 15.70 kcal Atomic # 7 Polarization: -81.61 SS G_CDS: -2.15 Total: -83.75 kcal Atomic # 8 Polarization: -62.97 SS G_CDS: 0.04 Total: -62.93 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.67 kcal Total: -80.47 6.88 -73.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733599493.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.838 kcal (2) G-P(sol) polarization free energy of solvation -80.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds