Wall clock time and date at job start Tue Mar 31 2020 16:35:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.46880 * 2 1 4 4 C 1.53004 * 109.47040 * 120.00256 * 2 1 3 5 5 H 1.08994 * 109.47028 * 299.99872 * 4 2 1 6 6 O 1.45200 * 109.47095 * 60.00095 * 4 2 1 7 7 C 1.34868 * 116.99685 * 206.67586 * 6 4 2 8 8 O 1.21587 * 119.99971 * 5.30501 * 7 6 4 9 9 C 1.46713 * 119.99761 * 185.30550 * 7 6 4 10 10 C 1.36220 * 125.44671 * 174.97628 * 9 7 6 11 11 C 1.41654 * 107.74066 * 180.02562 * 10 9 7 12 12 C 1.40043 * 133.33994 * 180.02562 * 11 10 9 13 13 C 1.36569 * 119.83669 * 179.97438 * 12 11 10 14 14 C 1.38863 * 120.59644 * 0.02562 * 13 12 11 15 15 C 1.37834 * 120.64068 * 359.97438 * 14 13 12 16 16 C 1.39097 * 119.81534 * 0.02562 * 15 14 13 17 17 N 1.37822 * 133.14667 * 180.02562 * 16 15 14 18 18 C 1.36870 * 125.62490 * 359.70900 * 17 16 15 19 19 H 1.08002 * 119.99695 * 141.48379 * 18 17 16 20 20 C 1.39018 * 120.00329 * 321.48424 * 18 17 16 21 21 N 1.31339 * 119.99793 * 341.35738 * 20 18 17 22 22 Si 1.86798 * 120.00053 * 161.34990 * 20 18 17 23 23 H 1.48501 * 109.47317 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47011 * 120.00298 * 22 20 18 25 25 H 1.48505 * 109.47424 * 240.00402 * 22 20 18 26 26 C 1.50696 * 109.46935 * 180.02562 * 4 2 1 27 27 O 1.20826 * 119.99649 * 245.00354 * 26 4 2 28 28 O 1.34231 * 120.00219 * 64.99731 * 26 4 2 29 29 H 1.09009 * 109.47227 * 299.99503 * 1 2 3 30 30 H 1.08998 * 109.47366 * 59.99486 * 1 2 3 31 31 H 1.08999 * 109.47255 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46743 * 240.00112 * 2 1 3 33 33 H 1.09007 * 109.46863 * 179.97438 * 3 2 1 34 34 H 1.08995 * 109.47531 * 299.99878 * 3 2 1 35 35 H 1.09003 * 109.46842 * 60.00633 * 3 2 1 36 36 H 1.07992 * 126.12745 * 0.06541 * 10 9 7 37 37 H 1.08006 * 120.08437 * 359.97438 * 12 11 10 38 38 H 1.07997 * 119.69991 * 180.02562 * 13 12 11 39 39 H 1.08004 * 119.67940 * 179.97438 * 14 13 12 40 40 H 1.08004 * 120.09690 * 180.02562 * 15 14 13 41 41 H 0.97004 * 119.99524 * 184.66375 * 21 20 18 42 42 H 0.96707 * 116.99769 * 180.02562 * 28 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6767 -0.2075 2.1392 6 8 1.5560 -2.0903 1.2492 7 6 1.4176 -2.6908 2.4488 8 8 1.6010 -2.0575 3.4704 9 6 1.0458 -4.1082 2.5211 10 6 0.9703 -4.8479 3.6624 11 6 0.5804 -6.1609 3.3008 12 6 0.3459 -7.3303 4.0347 13 6 -0.0295 -8.4738 3.3892 14 6 -0.1809 -8.4891 2.0089 15 6 0.0442 -7.3508 1.2649 16 6 0.4274 -6.1741 1.8999 17 7 0.7171 -4.9070 1.4415 18 6 0.6894 -4.5068 0.1329 19 1 0.3182 -3.5257 -0.1239 20 6 1.1390 -5.3632 -0.8656 21 7 1.9133 -6.3791 -0.5599 22 14 0.6416 -5.0693 -2.6420 23 1 -0.2278 -3.8680 -2.7204 24 1 1.8573 -4.8547 -3.4673 25 1 -0.0997 -6.2514 -3.1506 26 6 3.5469 -0.7208 1.2495 27 8 4.1514 -1.7630 1.1582 28 8 4.2177 0.4375 1.3512 29 1 -0.3634 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9564 -0.8899 35 1 1.6766 1.9563 0.8901 36 1 1.1710 -4.4962 4.6635 37 1 0.4615 -7.3280 5.1085 38 1 -0.2102 -9.3743 3.9573 39 1 -0.4779 -9.4017 1.5135 40 1 -0.0765 -7.3725 0.1918 41 1 2.2821 -6.9366 -1.2629 42 1 5.1835 0.3874 1.3465 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000736392365.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:35:25 Heat of formation + Delta-G solvation = -121.094333 kcal Electronic energy + Delta-G solvation = -29245.654212 eV Core-core repulsion = 25156.279640 eV Total energy + Delta-G solvation = -4089.374572 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.85823 -40.29351 -39.10002 -36.62998 -36.10870 -35.94704 -34.74613 -33.63929 -30.75307 -29.19544 -28.58669 -27.78723 -27.05823 -24.95903 -23.81313 -22.17525 -21.03626 -20.49391 -20.22278 -19.29172 -18.28045 -18.02063 -17.22775 -17.06928 -16.08182 -15.79035 -15.41471 -14.89563 -14.80846 -14.67672 -14.18272 -13.82021 -13.63806 -13.30327 -13.03936 -12.95886 -12.86571 -12.63453 -12.22994 -12.14520 -11.98002 -11.78709 -11.75417 -11.35200 -11.27351 -11.20425 -11.12228 -10.88120 -10.78539 -10.74252 -10.60125 -10.27607 -10.19990 -9.95060 -9.82043 -9.20423 -8.69138 -7.20362 -6.91782 -6.65191 -4.46882 1.61073 2.25287 2.57127 2.74273 2.94552 2.97269 2.99011 3.04571 3.28408 3.73662 4.07747 4.47390 4.55862 4.65915 4.80254 5.02884 5.06555 5.15448 5.25430 5.50834 5.59043 5.64777 5.80448 5.82651 5.89952 5.94840 6.06202 6.12169 6.22281 6.34432 6.38848 6.49391 6.51669 6.59753 6.74352 6.87747 6.99438 7.07112 7.13273 7.45533 7.56384 7.63736 7.86893 7.92580 7.98575 8.30616 8.36432 8.75880 9.23823 10.14809 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.012457 B = 0.004982 C = 0.004044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2247.109178 B = 5619.318044 C = 6921.959114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.084 4.084 3 C -0.154 4.154 4 C 0.101 3.899 5 H 0.118 0.882 6 O -0.300 6.300 7 C 0.548 3.452 8 O -0.527 6.527 9 C -0.022 4.022 10 C -0.161 4.161 11 C -0.130 4.130 12 C -0.085 4.085 13 C -0.156 4.156 14 C -0.149 4.149 15 C -0.050 4.050 16 C 0.090 3.910 17 N -0.233 5.233 18 C -0.340 4.340 19 H 0.118 0.882 20 C 0.054 3.946 21 N -0.810 5.810 22 Si 0.928 3.072 23 H -0.259 1.259 24 H -0.273 1.273 25 H -0.271 1.271 26 C 0.461 3.539 27 O -0.486 6.486 28 O -0.511 6.511 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.088 0.912 33 H 0.076 0.924 34 H 0.064 0.936 35 H 0.060 0.940 36 H 0.133 0.867 37 H 0.105 0.895 38 H 0.104 0.896 39 H 0.106 0.894 40 H 0.114 0.886 41 H 0.283 0.717 42 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.148 9.405 -1.177 9.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.103 4.103 3 C -0.211 4.211 4 C 0.043 3.957 5 H 0.136 0.864 6 O -0.216 6.216 7 C 0.397 3.603 8 O -0.417 6.417 9 C -0.135 4.135 10 C -0.189 4.189 11 C -0.134 4.134 12 C -0.104 4.104 13 C -0.175 4.175 14 C -0.170 4.170 15 C -0.069 4.069 16 C -0.026 4.026 17 N 0.106 4.894 18 C -0.468 4.468 19 H 0.135 0.865 20 C -0.160 4.160 21 N -0.438 5.438 22 Si 0.752 3.248 23 H -0.182 1.182 24 H -0.199 1.199 25 H -0.196 1.196 26 C 0.301 3.699 27 O -0.371 6.371 28 O -0.324 6.324 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.107 0.893 33 H 0.094 0.906 34 H 0.083 0.917 35 H 0.079 0.921 36 H 0.151 0.849 37 H 0.123 0.877 38 H 0.122 0.878 39 H 0.124 0.876 40 H 0.132 0.868 41 H 0.094 0.906 42 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -1.264 9.305 -1.377 9.491 hybrid contribution 0.947 0.005 -0.785 1.230 sum -0.317 9.310 -2.162 9.563 Atomic orbital electron populations 1.21822 0.93109 1.03483 1.02024 1.21126 0.97750 0.95925 0.95481 1.21997 1.02831 0.93859 1.02372 1.22166 0.86319 0.84059 1.03138 0.86429 1.87072 1.75589 1.25753 1.33165 1.20196 0.72753 0.86506 0.80831 1.90780 1.50622 1.64642 1.35643 1.18922 1.16321 0.88690 0.89613 1.20273 1.10474 0.92018 0.96088 1.17903 1.08781 0.93871 0.92892 1.20047 1.00749 0.91710 0.97928 1.20278 1.05523 0.97245 0.94491 1.20561 1.05623 0.96967 0.93868 1.20089 0.97839 0.90065 0.98909 1.18114 1.05326 0.87483 0.91684 1.40129 1.38668 1.05925 1.04660 1.19969 1.44298 1.03664 0.78857 0.86471 1.25680 0.93705 0.94987 1.01623 1.69980 1.23034 1.15191 1.35609 0.85838 0.79209 0.79530 0.80218 1.18214 1.19868 1.19589 1.23833 0.91998 0.81396 0.72712 1.90826 1.69865 1.33104 1.43262 1.84581 1.26416 1.35860 1.85524 0.92429 0.91814 0.91065 0.89346 0.90568 0.91694 0.92067 0.84897 0.87676 0.87831 0.87609 0.86819 0.90597 0.73508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 9.05 37.16 0.34 -1.45 16 2 C -0.08 -1.09 2.72 -90.62 -0.25 -1.34 16 3 C -0.15 -1.53 8.67 37.16 0.32 -1.20 16 4 C 0.10 1.66 2.08 -27.88 -0.06 1.60 16 5 H 0.12 1.84 7.20 -51.93 -0.37 1.46 16 6 O -0.30 -6.33 6.59 -47.64 -0.31 -6.64 16 7 C 0.55 12.76 7.76 34.15 0.27 13.03 16 8 O -0.53 -12.19 16.13 -19.33 -0.31 -12.50 16 9 C -0.02 -0.56 6.76 -82.27 -0.56 -1.12 16 10 C -0.16 -3.83 10.55 -39.01 -0.41 -4.24 16 11 C -0.13 -3.10 6.16 -106.90 -0.66 -3.76 16 12 C -0.09 -1.76 10.06 -39.51 -0.40 -2.15 16 13 C -0.16 -3.01 9.97 -39.95 -0.40 -3.41 16 14 C -0.15 -3.04 10.02 -39.50 -0.40 -3.44 16 15 C -0.05 -1.16 8.58 -39.41 -0.34 -1.50 16 16 C 0.09 2.29 6.08 -83.83 -0.51 1.78 16 17 N -0.23 -6.06 2.83 -56.10 -0.16 -6.22 16 18 C -0.34 -8.61 8.71 -15.01 -0.13 -8.74 16 19 H 0.12 2.83 6.89 -52.49 -0.36 2.47 16 20 C 0.05 1.32 4.39 -17.47 -0.08 1.25 16 21 N -0.81 -20.91 11.01 55.50 0.61 -20.30 16 22 Si 0.93 18.45 29.59 -169.99 -5.03 13.42 16 23 H -0.26 -4.92 7.11 56.52 0.40 -4.52 16 24 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 25 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 26 C 0.46 7.72 7.44 36.00 0.27 7.99 16 27 O -0.49 -10.42 17.21 -25.39 -0.44 -10.86 16 28 O -0.51 -5.95 10.64 -39.26 -0.42 -6.37 16 29 H 0.06 0.64 8.14 -51.92 -0.42 0.22 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 1.02 7.68 -51.93 -0.40 0.63 16 32 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.08 0.76 5.53 -51.92 -0.29 0.48 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.13 2.86 8.06 -52.49 -0.42 2.44 16 37 H 0.11 1.85 8.06 -52.48 -0.42 1.43 16 38 H 0.10 1.65 8.06 -52.49 -0.42 1.22 16 39 H 0.11 1.84 8.06 -52.48 -0.42 1.42 16 40 H 0.11 2.71 6.48 -52.48 -0.34 2.37 16 41 H 0.28 6.75 8.31 -40.82 -0.34 6.41 16 42 H 0.41 3.04 9.10 45.56 0.41 3.46 16 LS Contribution 358.48 15.07 5.40 5.40 Total: -1.00 -32.01 358.48 -7.93 -39.94 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: -4.29 Total: 10.83 kcal Atomic # 6 Polarization: -3.72 SS G_CDS: -2.99 Total: -6.70 kcal Atomic # 7 Polarization: -26.97 SS G_CDS: 0.45 Total: -26.52 kcal Atomic # 8 Polarization: -34.89 SS G_CDS: -1.48 Total: -36.37 kcal Atomic # 14 Polarization: 18.45 SS G_CDS: -5.03 Total: 13.42 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.01 -7.93 -39.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736392365.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.157 kcal (2) G-P(sol) polarization free energy of solvation -32.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds