Wall clock time and date at job start Tue Mar 31 2020 16:35:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.46880 * 2 1 4 4 C 1.53004 * 109.47040 * 120.00256 * 2 1 3 5 5 H 1.08994 * 109.47028 * 299.99872 * 4 2 1 6 6 O 1.45200 * 109.47095 * 60.00095 * 4 2 1 7 7 C 1.34868 * 116.99685 * 206.67586 * 6 4 2 8 8 O 1.21587 * 119.99971 * 5.30501 * 7 6 4 9 9 C 1.46713 * 119.99761 * 185.30550 * 7 6 4 10 10 C 1.36220 * 125.44671 * 174.97628 * 9 7 6 11 11 C 1.41654 * 107.74066 * 180.02562 * 10 9 7 12 12 C 1.40043 * 133.33994 * 180.02562 * 11 10 9 13 13 C 1.36569 * 119.83669 * 179.97438 * 12 11 10 14 14 C 1.38863 * 120.59644 * 0.02562 * 13 12 11 15 15 C 1.37834 * 120.64068 * 359.97438 * 14 13 12 16 16 C 1.39097 * 119.81534 * 0.02562 * 15 14 13 17 17 N 1.37822 * 133.14667 * 180.02562 * 16 15 14 18 18 C 1.36870 * 125.62490 * 359.70900 * 17 16 15 19 19 H 1.08002 * 119.99695 * 141.48379 * 18 17 16 20 20 C 1.39018 * 120.00329 * 321.48424 * 18 17 16 21 21 N 1.31339 * 119.99793 * 341.35738 * 20 18 17 22 22 Si 1.86798 * 120.00053 * 161.34990 * 20 18 17 23 23 H 1.48501 * 109.47317 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47011 * 120.00298 * 22 20 18 25 25 H 1.48505 * 109.47424 * 240.00402 * 22 20 18 26 26 C 1.50696 * 109.46935 * 180.02562 * 4 2 1 27 27 O 1.20826 * 119.99649 * 245.00354 * 26 4 2 28 28 O 1.34231 * 120.00219 * 64.99731 * 26 4 2 29 29 H 1.09009 * 109.47227 * 299.99503 * 1 2 3 30 30 H 1.08998 * 109.47366 * 59.99486 * 1 2 3 31 31 H 1.08999 * 109.47255 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46743 * 240.00112 * 2 1 3 33 33 H 1.09007 * 109.46863 * 179.97438 * 3 2 1 34 34 H 1.08995 * 109.47531 * 299.99878 * 3 2 1 35 35 H 1.09003 * 109.46842 * 60.00633 * 3 2 1 36 36 H 1.07992 * 126.12745 * 0.06541 * 10 9 7 37 37 H 1.08006 * 120.08437 * 359.97438 * 12 11 10 38 38 H 1.07997 * 119.69991 * 180.02562 * 13 12 11 39 39 H 1.08004 * 119.67940 * 179.97438 * 14 13 12 40 40 H 1.08004 * 120.09690 * 180.02562 * 15 14 13 41 41 H 0.97004 * 119.99524 * 184.66375 * 21 20 18 42 42 H 0.96707 * 116.99769 * 180.02562 * 28 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6767 -0.2075 2.1392 6 8 1.5560 -2.0903 1.2492 7 6 1.4176 -2.6908 2.4488 8 8 1.6010 -2.0575 3.4704 9 6 1.0458 -4.1082 2.5211 10 6 0.9703 -4.8479 3.6624 11 6 0.5804 -6.1609 3.3008 12 6 0.3459 -7.3303 4.0347 13 6 -0.0295 -8.4738 3.3892 14 6 -0.1809 -8.4891 2.0089 15 6 0.0442 -7.3508 1.2649 16 6 0.4274 -6.1741 1.8999 17 7 0.7171 -4.9070 1.4415 18 6 0.6894 -4.5068 0.1329 19 1 0.3182 -3.5257 -0.1239 20 6 1.1390 -5.3632 -0.8656 21 7 1.9133 -6.3791 -0.5599 22 14 0.6416 -5.0693 -2.6420 23 1 -0.2278 -3.8680 -2.7204 24 1 1.8573 -4.8547 -3.4673 25 1 -0.0997 -6.2514 -3.1506 26 6 3.5469 -0.7208 1.2495 27 8 4.1514 -1.7630 1.1582 28 8 4.2177 0.4375 1.3512 29 1 -0.3634 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9564 -0.8899 35 1 1.6766 1.9563 0.8901 36 1 1.1710 -4.4962 4.6635 37 1 0.4615 -7.3280 5.1085 38 1 -0.2102 -9.3743 3.9573 39 1 -0.4779 -9.4017 1.5135 40 1 -0.0765 -7.3725 0.1918 41 1 2.2821 -6.9366 -1.2629 42 1 5.1835 0.3874 1.3465 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000736392365.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:35:19 Heat of formation + Delta-G solvation = -138.579786 kcal Electronic energy + Delta-G solvation = -29246.412438 eV Core-core repulsion = 25156.279640 eV Total energy + Delta-G solvation = -4090.132799 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 1.99 seconds Orbital eigenvalues (eV) -42.45968 -41.87198 -40.66990 -38.09865 -37.64415 -37.38356 -36.03605 -35.45297 -32.54893 -30.86450 -30.20268 -29.19170 -28.00029 -26.80610 -25.45568 -23.46764 -22.76979 -22.07253 -21.46799 -21.03842 -19.87111 -19.50458 -18.88527 -18.42395 -17.65675 -17.33659 -16.98745 -16.54539 -16.42619 -16.32851 -15.50574 -15.18965 -15.01416 -14.84685 -14.68015 -14.62123 -14.34542 -13.81644 -13.66509 -13.61807 -13.52159 -13.05445 -13.02120 -12.92930 -12.86161 -12.68734 -12.42533 -12.35716 -12.16731 -12.00021 -11.90129 -11.85970 -11.77845 -11.50852 -11.39700 -10.99637 -10.47389 -8.98334 -8.72528 -8.42709 -6.36916 -0.14439 0.91497 1.01978 1.07702 1.32934 1.34553 1.37881 1.49805 1.92577 2.07367 2.28195 2.73772 2.82123 3.32773 3.40070 3.60875 3.77673 4.02618 4.16682 4.20316 4.21889 4.41421 4.46903 4.48655 4.69230 4.76009 4.80268 4.88221 4.94552 4.98864 5.06688 5.11846 5.14333 5.19561 5.30287 5.33600 5.39067 5.42309 5.45718 5.70597 5.87805 5.93549 6.12822 6.25399 6.54126 6.56226 6.78963 6.94117 7.40612 8.35014 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.012457 B = 0.004982 C = 0.004044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2247.109178 B = 5619.318044 C = 6921.959114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.080 4.080 3 C -0.146 4.146 4 C 0.088 3.912 5 H 0.127 0.873 6 O -0.312 6.312 7 C 0.548 3.452 8 O -0.536 6.536 9 C -0.056 4.056 10 C -0.166 4.166 11 C -0.152 4.152 12 C -0.088 4.088 13 C -0.149 4.149 14 C -0.134 4.134 15 C -0.083 4.083 16 C 0.064 3.936 17 N -0.252 5.252 18 C -0.363 4.363 19 H 0.116 0.884 20 C 0.016 3.984 21 N -0.848 5.848 22 Si 0.993 3.007 23 H -0.247 1.247 24 H -0.272 1.272 25 H -0.262 1.262 26 C 0.470 3.530 27 O -0.542 6.542 28 O -0.485 6.485 29 H 0.068 0.932 30 H 0.089 0.911 31 H 0.040 0.960 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.088 0.912 35 H 0.071 0.929 36 H 0.149 0.851 37 H 0.138 0.862 38 H 0.150 0.850 39 H 0.139 0.861 40 H 0.099 0.901 41 H 0.286 0.714 42 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.770 9.807 -1.232 10.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.099 4.099 3 C -0.203 4.203 4 C 0.032 3.968 5 H 0.145 0.855 6 O -0.228 6.228 7 C 0.397 3.603 8 O -0.427 6.427 9 C -0.169 4.169 10 C -0.194 4.194 11 C -0.156 4.156 12 C -0.107 4.107 13 C -0.168 4.168 14 C -0.154 4.154 15 C -0.103 4.103 16 C -0.052 4.052 17 N 0.086 4.914 18 C -0.491 4.491 19 H 0.133 0.867 20 C -0.194 4.194 21 N -0.477 5.477 22 Si 0.813 3.187 23 H -0.170 1.170 24 H -0.197 1.197 25 H -0.187 1.187 26 C 0.312 3.688 27 O -0.432 6.432 28 O -0.299 6.299 29 H 0.087 0.913 30 H 0.108 0.892 31 H 0.059 0.941 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.106 0.894 35 H 0.090 0.910 36 H 0.167 0.833 37 H 0.156 0.844 38 H 0.168 0.832 39 H 0.157 0.843 40 H 0.117 0.883 41 H 0.096 0.904 42 H 0.291 0.709 Dipole moment (debyes) X Y Z Total from point charges -1.878 9.758 -1.426 10.038 hybrid contribution 1.166 -0.109 -0.644 1.336 sum -0.712 9.648 -2.070 9.894 Atomic orbital electron populations 1.21822 0.92473 1.02048 1.03877 1.21249 0.98274 0.97315 0.93036 1.21985 1.02745 0.91454 1.04082 1.22726 0.86619 0.82045 1.05456 0.85520 1.87027 1.75535 1.28191 1.32007 1.20063 0.72558 0.86262 0.81388 1.90735 1.51242 1.64840 1.35924 1.19444 1.17248 0.89970 0.90200 1.20584 1.09993 0.92322 0.96518 1.18330 1.09476 0.95017 0.92785 1.20489 0.99752 0.90825 0.99601 1.20779 1.03447 0.98397 0.94159 1.21044 1.02812 0.96872 0.94675 1.20182 1.00491 0.90961 0.98671 1.18646 1.05830 0.87845 0.92865 1.40329 1.39706 1.06472 1.04942 1.20203 1.45272 1.04206 0.79387 0.86686 1.26586 0.92982 0.94386 1.05449 1.70072 1.24393 1.16368 1.36898 0.84904 0.78976 0.80029 0.74840 1.17003 1.19694 1.18663 1.23850 0.92174 0.81543 0.71224 1.90815 1.70889 1.35236 1.46248 1.84526 1.28286 1.32901 1.84213 0.91328 0.89201 0.94121 0.90453 0.90612 0.89362 0.90982 0.83307 0.84418 0.83233 0.84301 0.88259 0.90404 0.70938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.41 9.05 71.98 0.65 -2.76 16 2 C -0.08 -2.01 2.72 -10.79 -0.03 -2.04 16 3 C -0.15 -2.51 8.67 71.98 0.62 -1.89 16 4 C 0.09 2.94 2.08 29.85 0.06 3.01 16 5 H 0.13 3.96 7.20 -2.39 -0.02 3.94 16 6 O -0.31 -13.80 6.59 -51.43 -0.34 -14.14 16 7 C 0.55 26.72 7.76 70.04 0.54 27.27 16 8 O -0.54 -25.59 16.13 19.55 0.32 -25.27 16 9 C -0.06 -2.95 6.76 39.87 0.27 -2.68 16 10 C -0.17 -8.15 10.55 22.64 0.24 -7.91 16 11 C -0.15 -7.32 6.16 -21.34 -0.13 -7.45 16 12 C -0.09 -3.44 10.06 22.32 0.22 -3.22 16 13 C -0.15 -5.26 9.97 22.03 0.22 -5.04 16 14 C -0.13 -5.19 10.02 22.32 0.22 -4.97 16 15 C -0.08 -3.98 8.58 22.38 0.19 -3.79 16 16 C 0.06 3.35 6.08 39.07 0.24 3.59 16 17 N -0.25 -13.82 2.83 -331.41 -0.94 -14.76 16 18 C -0.36 -19.37 8.71 84.09 0.73 -18.64 16 19 H 0.12 5.92 6.89 -2.91 -0.02 5.90 16 20 C 0.02 0.81 4.39 84.95 0.37 1.19 16 21 N -0.85 -45.57 11.01 21.67 0.24 -45.34 16 22 Si 0.99 38.69 29.59 68.60 2.03 40.72 16 23 H -0.25 -9.02 7.11 99.48 0.71 -8.32 16 24 H -0.27 -10.42 7.11 99.48 0.71 -9.72 16 25 H -0.26 -9.74 7.11 99.48 0.71 -9.03 16 26 C 0.47 15.83 7.44 71.23 0.53 16.36 16 27 O -0.54 -24.10 17.21 28.31 0.49 -23.62 16 28 O -0.49 -10.53 10.64 -51.42 -0.55 -11.08 16 29 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16 30 H 0.09 1.62 8.14 -2.39 -0.02 1.61 16 31 H 0.04 1.20 7.68 -2.39 -0.02 1.18 16 32 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.08 1.32 5.53 -2.38 -0.01 1.30 16 34 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.15 6.53 8.06 -2.91 -0.02 6.51 16 37 H 0.14 4.41 8.06 -2.91 -0.02 4.39 16 38 H 0.15 3.94 8.06 -2.91 -0.02 3.91 16 39 H 0.14 4.39 8.06 -2.91 -0.02 4.37 16 40 H 0.10 4.92 6.48 -2.91 -0.02 4.90 16 41 H 0.29 14.14 8.31 -92.71 -0.77 13.37 16 42 H 0.43 5.60 9.10 -74.05 -0.67 4.93 16 Total: -1.00 -74.09 358.48 6.61 -67.48 By element: Atomic # 1 Polarization: 34.59 SS G_CDS: 0.40 Total: 34.99 kcal Atomic # 6 Polarization: -13.94 SS G_CDS: 4.96 Total: -8.98 kcal Atomic # 7 Polarization: -59.40 SS G_CDS: -0.70 Total: -60.10 kcal Atomic # 8 Polarization: -74.03 SS G_CDS: -0.08 Total: -74.11 kcal Atomic # 14 Polarization: 38.69 SS G_CDS: 2.03 Total: 40.72 kcal Total: -74.09 6.61 -67.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736392365.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.102 kcal (2) G-P(sol) polarization free energy of solvation -74.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.99 seconds