Wall clock time and date at job start Tue Mar 31 2020 15:52:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.37867 * 119.65462 * 2 1 4 4 C 1.38881 * 119.95992 * 179.97438 * 3 2 1 5 5 O 1.34832 * 133.42254 * 180.02562 * 4 3 2 6 6 C 1.34441 * 110.89712 * 179.97438 * 5 4 3 7 7 C 1.33990 * 110.16131 * 359.97438 * 6 5 4 8 8 C 1.50704 * 126.90846 * 179.97438 * 7 6 5 9 9 C 1.50704 * 109.46976 * 265.00132 * 8 7 6 10 10 O 1.21297 * 120.00074 * 0.02562 * 9 8 7 11 11 N 1.34779 * 119.99730 * 180.02562 * 9 8 7 12 12 C 1.37103 * 119.99352 * 179.97438 * 11 9 8 13 13 H 1.08000 * 120.00445 * 16.51577 * 12 11 9 14 14 C 1.38949 * 119.99410 * 196.50732 * 12 11 9 15 15 N 1.31413 * 120.00118 * 21.64796 * 14 12 11 16 16 Si 1.86795 * 120.00054 * 201.64142 * 14 12 11 17 17 H 1.48501 * 109.47084 * 60.00465 * 16 14 12 18 18 H 1.48505 * 109.47548 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47565 * 300.00670 * 16 14 12 20 20 C 1.46496 * 120.00078 * 359.97438 * 11 9 8 21 21 C 1.50696 * 109.46919 * 84.07074 * 20 11 9 22 22 O 1.20825 * 120.00100 * 359.97438 * 21 20 11 23 23 O 1.34227 * 119.99980 * 179.97438 * 21 20 11 24 24 C 1.40512 * 119.31902 * 359.97438 * 4 3 2 25 25 C 1.39386 * 120.15246 * 0.02562 * 24 4 3 26 26 C 1.37758 * 119.60442 * 359.97438 * 25 24 4 27 27 C 1.50701 * 119.86324 * 180.02562 * 26 25 24 28 28 H 1.09002 * 109.46553 * 270.02163 * 1 2 3 29 29 H 1.08999 * 109.47112 * 30.01328 * 1 2 3 30 30 H 1.08997 * 109.46898 * 150.02499 * 1 2 3 31 31 H 1.08002 * 120.01855 * 0.02562 * 3 2 1 32 32 H 1.08001 * 124.92047 * 179.97438 * 6 5 4 33 33 H 1.08996 * 109.47124 * 24.99879 * 8 7 6 34 34 H 1.08992 * 109.47054 * 145.00498 * 8 7 6 35 35 H 0.97002 * 119.99945 * 179.97438 * 15 14 12 36 36 H 1.08999 * 109.46634 * 204.06719 * 20 11 9 37 37 H 1.08998 * 109.47221 * 324.07071 * 20 11 9 38 38 H 0.96697 * 117.00372 * 179.97438 * 23 21 20 39 39 H 1.08002 * 120.19172 * 179.97438 * 25 24 4 40 40 H 1.09009 * 109.46773 * 89.99911 * 27 26 25 41 41 H 1.08996 * 109.46946 * 209.99974 * 27 26 25 42 42 H 1.09000 * 109.46935 * 330.00745 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1891 1.1981 0.0000 4 6 3.5779 1.2055 0.0005 5 8 4.4995 2.1897 0.0011 6 6 5.7441 1.6813 0.0020 7 6 5.6959 0.3423 0.0027 8 6 6.8677 -0.6055 0.0032 9 6 7.1805 -1.0183 -1.4120 10 8 6.5175 -0.5851 -2.3307 11 7 8.1970 -1.8688 -1.6568 12 6 8.4812 -2.2448 -2.9442 13 1 8.0862 -1.6756 -3.7727 14 6 9.2775 -3.3581 -3.1831 15 7 9.4090 -4.2825 -2.2584 16 14 10.1611 -3.5408 -4.8187 17 1 11.0819 -2.3924 -5.0149 18 1 10.9390 -4.8058 -4.8225 19 1 9.1646 -3.5698 -5.9192 20 6 8.9980 -2.3915 -0.5472 21 6 8.3055 -3.5882 0.0522 22 8 7.2508 -3.9655 -0.4007 23 8 8.8604 -4.2351 1.0892 24 6 4.2725 -0.0160 0.0016 25 6 3.5709 -1.2203 0.0016 26 6 2.1934 -1.2055 0.0011 27 6 1.4289 -2.5042 0.0016 28 1 -0.3632 0.0004 1.0277 29 1 -0.3633 0.8899 -0.5140 30 1 -0.3633 -0.8902 -0.5134 31 1 1.6438 2.1303 0.0004 32 1 6.6513 2.2673 0.0022 33 1 7.7358 -0.1096 0.4374 34 1 6.6207 -1.4882 0.5930 35 1 9.9647 -5.0599 -2.4253 36 1 9.9802 -2.6871 -0.9159 37 1 9.1127 -1.6194 0.2135 38 1 8.3789 -4.9967 1.4400 39 1 4.1041 -2.1596 0.0020 40 1 1.2442 -2.8166 1.0296 41 1 0.4779 -2.3662 -0.5126 42 1 2.0119 -3.2691 -0.5113 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000738487169.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:52:28 Heat of formation + Delta-G solvation = -112.599888 kcal Electronic energy + Delta-G solvation = -28651.773564 eV Core-core repulsion = 24562.767338 eV Total energy + Delta-G solvation = -4089.006226 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.39694 -41.21421 -39.92880 -39.53460 -37.05595 -36.37811 -35.02444 -33.78210 -33.16601 -32.62964 -29.77329 -29.20366 -27.94740 -27.25306 -26.40142 -23.45902 -22.90075 -22.04432 -21.78397 -20.26790 -19.02285 -18.69676 -18.17996 -18.07602 -17.62540 -17.32309 -17.04569 -16.39647 -16.29230 -16.15073 -15.85184 -15.52080 -15.33045 -15.00869 -14.87685 -14.39914 -13.98847 -13.69218 -13.61323 -13.59339 -13.43992 -13.35281 -13.28791 -13.00877 -12.68364 -12.66488 -12.38562 -12.35359 -12.20525 -12.16426 -12.11625 -11.77097 -11.52305 -10.96142 -10.93166 -10.40057 -9.87449 -9.32994 -8.99500 -8.44229 -5.95793 -0.04586 0.34056 1.32301 1.37570 1.42125 1.52471 1.69797 1.87291 1.87669 2.26606 2.53838 2.63811 2.98306 3.12197 3.50248 3.61824 3.84910 3.90889 4.02601 4.06113 4.22593 4.25548 4.30102 4.42906 4.52024 4.56042 4.70066 4.74846 4.76732 4.81277 4.90659 4.92767 4.93631 5.11237 5.21367 5.25466 5.39014 5.43932 5.46540 5.61328 5.77203 5.94961 6.01256 6.20728 6.39434 7.10780 7.29546 7.45357 7.93838 8.61919 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.014399 B = 0.003638 C = 0.003509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1944.097865 B = 7694.688585 C = 7977.200312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.066 4.066 3 C -0.111 4.111 4 C 0.026 3.974 5 O -0.199 6.199 6 C 0.020 3.980 7 C -0.177 4.177 8 C -0.052 4.052 9 C 0.454 3.546 10 O -0.616 6.616 11 N -0.444 5.444 12 C -0.342 4.342 13 H 0.075 0.925 14 C 0.002 3.998 15 N -0.892 5.892 16 Si 0.990 3.010 17 H -0.261 1.261 18 H -0.272 1.272 19 H -0.285 1.285 20 C 0.141 3.859 21 C 0.495 3.505 22 O -0.550 6.550 23 O -0.518 6.518 24 C -0.141 4.141 25 C -0.094 4.094 26 C -0.108 4.108 27 C -0.110 4.110 28 H 0.091 0.909 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.158 0.842 32 H 0.246 0.754 33 H 0.134 0.866 34 H 0.083 0.917 35 H 0.275 0.725 36 H 0.121 0.879 37 H 0.127 0.873 38 H 0.413 0.587 39 H 0.101 0.899 40 H 0.087 0.913 41 H 0.095 0.905 42 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.122 6.355 11.426 15.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.066 4.066 3 C -0.129 4.129 4 C -0.021 4.021 5 O -0.101 6.101 6 C -0.044 4.044 7 C -0.178 4.178 8 C -0.092 4.092 9 C 0.244 3.756 10 O -0.501 6.501 11 N -0.164 5.164 12 C -0.469 4.469 13 H 0.093 0.907 14 C -0.200 4.200 15 N -0.531 5.531 16 Si 0.813 3.187 17 H -0.185 1.185 18 H -0.197 1.197 19 H -0.211 1.211 20 C 0.015 3.985 21 C 0.337 3.663 22 O -0.439 6.439 23 O -0.330 6.330 24 C -0.142 4.142 25 C -0.113 4.113 26 C -0.108 4.108 27 C -0.166 4.166 28 H 0.109 0.891 29 H 0.100 0.900 30 H 0.102 0.898 31 H 0.175 0.825 32 H 0.262 0.738 33 H 0.152 0.848 34 H 0.102 0.898 35 H 0.084 0.916 36 H 0.139 0.861 37 H 0.144 0.856 38 H 0.272 0.728 39 H 0.119 0.881 40 H 0.105 0.895 41 H 0.113 0.887 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -8.482 6.875 10.716 15.299 hybrid contribution 0.613 -1.468 -0.905 1.831 sum -7.869 5.407 9.811 13.690 Atomic orbital electron populations 1.20924 0.87190 1.04343 1.03985 1.19899 0.98116 0.90292 0.98343 1.20077 0.87413 1.00161 1.05236 1.19917 0.92080 0.85365 1.04727 1.83946 1.14698 1.34556 1.76851 1.24302 0.86364 0.93078 1.00676 1.20710 0.92567 0.94866 1.09704 1.19900 0.96946 0.98690 0.93670 1.20848 0.80046 0.83250 0.91427 1.90507 1.51264 1.60198 1.48177 1.43596 1.27496 1.39290 1.06023 1.19546 1.31464 1.11896 0.84025 0.90692 1.25908 0.98326 0.92999 1.02745 1.69875 1.37864 1.08499 1.36866 0.85059 0.78134 0.78091 0.77374 1.18509 1.19673 1.21136 1.20900 0.96362 0.91867 0.89365 1.23902 0.82501 0.84506 0.75372 1.90613 1.26063 1.66964 1.60282 1.84449 1.55453 1.46142 1.46948 1.20055 0.93582 0.94778 1.05748 1.20487 0.94453 0.95839 1.00482 1.19960 0.92209 0.97142 1.01466 1.20875 1.00172 0.92140 1.03452 0.89066 0.89962 0.89799 0.82473 0.73783 0.84806 0.89846 0.91554 0.86108 0.85596 0.72780 0.88128 0.89486 0.88684 0.93004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.70 9.58 71.24 0.68 -1.01 16 2 C -0.07 -1.71 5.88 -19.84 -0.12 -1.83 16 3 C -0.11 -3.11 9.69 22.34 0.22 -2.89 16 4 C 0.03 0.91 7.41 22.98 0.17 1.08 16 5 O -0.20 -6.63 10.58 -9.08 -0.10 -6.72 16 6 C 0.02 0.63 11.89 66.85 0.79 1.42 16 7 C -0.18 -6.68 4.85 -18.59 -0.09 -6.77 16 8 C -0.05 -1.97 4.86 29.10 0.14 -1.82 16 9 C 0.45 22.72 7.41 87.66 0.65 23.37 16 10 O -0.62 -36.50 15.67 -3.08 -0.05 -36.55 16 11 N -0.44 -22.55 2.18 -639.60 -1.39 -23.95 16 12 C -0.34 -19.37 9.34 84.04 0.79 -18.59 16 13 H 0.08 4.61 7.37 -2.91 -0.02 4.59 16 14 C 0.00 0.09 4.87 84.93 0.41 0.51 16 15 N -0.89 -46.30 9.28 21.66 0.20 -46.10 16 16 Si 0.99 42.23 29.60 68.60 2.03 44.26 16 17 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 18 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 19 H -0.29 -12.68 7.11 99.48 0.71 -11.98 16 20 C 0.14 5.82 4.97 85.63 0.43 6.25 16 21 C 0.49 21.13 5.86 71.23 0.42 21.55 16 22 O -0.55 -28.62 16.79 21.97 0.37 -28.25 16 23 O -0.52 -17.08 13.42 -51.39 -0.69 -17.77 16 24 C -0.14 -5.58 6.38 -20.21 -0.13 -5.71 16 25 C -0.09 -3.64 9.74 22.43 0.22 -3.42 16 26 C -0.11 -3.27 5.88 -19.86 -0.12 -3.39 16 27 C -0.11 -2.56 9.59 71.24 0.68 -1.88 16 28 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.08 1.06 8.08 -2.39 -0.02 1.04 16 30 H 0.08 1.15 5.91 -2.39 -0.01 1.14 16 31 H 0.16 3.32 8.06 -2.91 -0.02 3.30 16 32 H 0.25 5.16 8.06 -2.91 -0.02 5.14 16 33 H 0.13 3.68 7.42 -2.39 -0.02 3.66 16 34 H 0.08 3.18 7.51 -2.39 -0.02 3.17 16 35 H 0.27 13.52 8.31 -92.71 -0.77 12.75 16 36 H 0.12 5.21 6.37 -2.39 -0.02 5.19 16 37 H 0.13 3.87 6.69 -2.39 -0.02 3.85 16 38 H 0.41 10.24 9.10 -74.06 -0.67 9.57 16 39 H 0.10 4.23 8.06 -2.91 -0.02 4.21 16 40 H 0.09 1.68 8.14 -2.38 -0.02 1.66 16 41 H 0.09 1.69 5.91 -2.39 -0.01 1.67 16 42 H 0.05 1.36 8.08 -2.39 -0.02 1.34 16 Total: -1.00 -82.86 358.26 5.93 -76.93 By element: Atomic # 1 Polarization: 30.88 SS G_CDS: 0.41 Total: 31.30 kcal Atomic # 6 Polarization: 1.70 SS G_CDS: 5.15 Total: 6.85 kcal Atomic # 7 Polarization: -68.85 SS G_CDS: -1.19 Total: -70.05 kcal Atomic # 8 Polarization: -88.83 SS G_CDS: -0.47 Total: -89.29 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.26 kcal Total: -82.86 5.93 -76.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000738487169.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.667 kcal (2) G-P(sol) polarization free energy of solvation -82.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds