Wall clock time and date at job start Tue Mar 31 2020 15:58:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35962 * 126.96439 * 2 1 4 4 C 1.46805 * 125.13881 * 359.41357 * 3 2 1 5 5 O 1.21701 * 120.00186 * 356.85372 * 4 3 2 6 6 N 1.34775 * 119.99823 * 176.85962 * 4 3 2 7 7 C 1.36787 * 120.00065 * 184.51919 * 6 4 3 8 8 H 1.08004 * 120.00116 * 16.07439 * 7 6 4 9 9 C 1.39076 * 120.00158 * 196.07803 * 7 6 4 10 10 N 1.31350 * 120.00180 * 14.14613 * 9 7 6 11 11 Si 1.86798 * 120.00082 * 194.14109 * 9 7 6 12 12 H 1.48506 * 109.46963 * 0.02562 * 11 9 7 13 13 H 1.48501 * 109.47094 * 119.99840 * 11 9 7 14 14 H 1.48495 * 109.47359 * 240.00112 * 11 9 7 15 15 C 1.46503 * 120.00245 * 4.51596 * 6 4 3 16 16 C 1.50705 * 109.46968 * 83.42345 * 15 6 4 17 17 O 1.20828 * 119.99938 * 0.02562 * 16 15 6 18 18 O 1.34225 * 120.00170 * 179.97438 * 16 15 6 19 19 O 1.34951 * 109.71658 * 179.90071 * 3 2 1 20 20 C 1.34736 * 110.87071 * 359.50914 * 19 3 2 21 21 C 1.40790 * 107.60532 * 0.21850 * 20 19 3 22 22 C 1.39689 * 120.08588 * 180.33551 * 21 20 19 23 23 C 1.50699 * 120.15135 * 179.75247 * 22 21 20 24 24 C 1.36666 * 119.70597 * 359.72395 * 22 21 20 25 25 C 1.38795 * 120.44212 * 0.02562 * 24 22 21 26 26 C 1.37863 * 120.74545 * 0.02562 * 25 24 22 27 27 C 1.50695 * 120.07058 * 179.97438 * 26 25 24 28 28 H 1.08998 * 109.46758 * 264.03932 * 1 2 3 29 29 H 1.09000 * 109.46562 * 24.03991 * 1 2 3 30 30 H 1.08999 * 109.47563 * 144.03664 * 1 2 3 31 31 H 0.96994 * 120.00666 * 179.97438 * 10 9 7 32 32 H 1.08996 * 109.47461 * 203.42130 * 15 6 4 33 33 H 1.08997 * 109.47215 * 323.42679 * 15 6 4 34 34 H 0.96693 * 117.00578 * 179.97438 * 18 16 15 35 35 H 1.08998 * 109.46823 * 275.71286 * 23 22 21 36 36 H 1.09007 * 109.46631 * 35.70666 * 23 22 21 37 37 H 1.09003 * 109.47543 * 155.70481 * 23 22 21 38 38 H 1.08002 * 119.78082 * 179.97438 * 24 22 21 39 39 H 1.07996 * 119.62767 * 179.97438 * 25 24 22 40 40 H 1.08992 * 109.47800 * 89.99508 * 27 26 25 41 41 H 1.09009 * 109.46698 * 329.99966 * 27 26 25 42 42 H 1.09001 * 109.47173 * 210.00456 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3246 1.0864 0.0000 4 6 1.8735 2.4833 -0.0123 5 8 0.6856 2.7386 -0.0814 6 7 2.7749 3.4831 0.0529 7 6 2.3518 4.7813 0.1347 8 1 1.3296 5.0000 0.4064 9 6 3.2378 5.8196 -0.1319 10 7 4.3832 5.5699 -0.7244 11 14 2.7989 7.5695 0.3524 12 1 1.4629 7.5834 1.0008 13 1 3.8149 8.0899 1.3022 14 1 2.7700 8.4263 -0.8601 15 6 4.2081 3.1795 0.0361 16 6 4.6682 3.0062 -1.3885 17 8 3.8800 3.1245 -2.2966 18 8 5.9538 2.7213 -1.6486 19 8 3.6134 0.6862 0.0022 20 6 3.6985 -0.6584 0.0145 21 6 2.3862 -1.1682 0.0156 22 6 2.1710 -2.5483 0.0345 23 6 0.7669 -3.0955 0.0413 24 6 3.2396 -3.4002 0.0462 25 6 4.5355 -2.9030 0.0399 26 6 4.7690 -1.5444 0.0224 27 6 6.1822 -1.0212 0.0164 28 1 -0.3633 -0.1067 1.0221 29 1 -0.3632 0.9386 -0.4187 30 1 -0.3634 -0.8318 -0.6035 31 1 5.0009 6.2940 -0.9107 32 1 4.7585 3.9988 0.4985 33 1 4.3912 2.2597 0.5915 34 1 6.2015 2.6188 -2.5776 35 1 0.3908 -3.1180 1.0641 36 1 0.1257 -2.4581 -0.5677 37 1 0.7686 -4.1059 -0.3676 38 1 3.0747 -4.4674 0.0612 39 1 5.3702 -3.5881 0.0497 40 1 6.5236 -0.9084 -1.0125 41 1 6.8316 -1.7230 0.5398 42 1 6.2136 -0.0538 0.5178 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000738578210.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:58:07 Heat of formation + Delta-G solvation = -86.901106 kcal Electronic energy + Delta-G solvation = -29692.593320 eV Core-core repulsion = 25604.701477 eV Total energy + Delta-G solvation = -4087.891843 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.17957 -39.41373 -38.35162 -37.78964 -35.49684 -34.76556 -34.32028 -32.29234 -31.86461 -29.71729 -29.32104 -27.81817 -27.25565 -25.20312 -24.60188 -22.74871 -22.35185 -21.16610 -19.64219 -18.89498 -17.49400 -17.32343 -16.94842 -16.48877 -16.12576 -15.45482 -15.34341 -15.11944 -14.60898 -14.39705 -14.13662 -13.82415 -13.65520 -13.43023 -13.15557 -13.07539 -12.79782 -12.63392 -12.48194 -12.37382 -12.12052 -11.99188 -11.69408 -11.63006 -11.49897 -11.27313 -11.16706 -10.96374 -10.59579 -10.53586 -10.46687 -10.36961 -9.78399 -9.32747 -9.18510 -8.84287 -8.33407 -8.16005 -7.60481 -6.64852 -4.08312 0.93903 1.54179 2.26612 2.99023 3.07460 3.15391 3.21863 3.48628 3.74320 3.79338 3.98122 4.24508 4.46423 4.70861 4.89070 4.89990 5.00375 5.12916 5.19926 5.35256 5.50569 5.52531 5.61083 5.64113 5.67955 5.73939 5.87135 5.98261 6.00686 6.11641 6.20953 6.28903 6.38356 6.45747 6.48565 6.56525 6.62018 6.69480 6.83948 6.90919 7.31383 7.39891 7.48840 7.78820 8.15594 8.83008 8.95851 9.09246 9.58583 10.40057 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.016489 B = 0.004612 C = 0.003814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.670897 B = 6069.159055 C = 7339.486649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.127 4.127 3 C 0.013 3.987 4 C 0.514 3.486 5 O -0.554 6.554 6 N -0.404 5.404 7 C -0.294 4.294 8 H 0.116 0.884 9 C 0.029 3.971 10 N -0.875 5.875 11 Si 0.941 3.059 12 H -0.264 1.264 13 H -0.277 1.277 14 H -0.279 1.279 15 C 0.132 3.868 16 C 0.501 3.499 17 O -0.513 6.513 18 O -0.529 6.529 19 O -0.180 6.180 20 C 0.055 3.945 21 C -0.121 4.121 22 C -0.042 4.042 23 C -0.118 4.118 24 C -0.142 4.142 25 C -0.101 4.101 26 C -0.078 4.078 27 C -0.111 4.111 28 H 0.065 0.935 29 H 0.096 0.904 30 H 0.061 0.939 31 H 0.276 0.724 32 H 0.143 0.857 33 H 0.093 0.907 34 H 0.391 0.609 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.064 0.936 38 H 0.124 0.876 39 H 0.130 0.870 40 H 0.070 0.930 41 H 0.067 0.933 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.718 -13.888 2.815 14.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.130 4.130 3 C -0.037 4.037 4 C 0.303 3.697 5 O -0.439 6.439 6 N -0.120 5.120 7 C -0.421 4.421 8 H 0.133 0.867 9 C -0.175 4.175 10 N -0.515 5.515 11 Si 0.767 3.233 12 H -0.188 1.188 13 H -0.202 1.202 14 H -0.205 1.205 15 C 0.007 3.993 16 C 0.342 3.658 17 O -0.399 6.399 18 O -0.340 6.340 19 O -0.082 6.082 20 C 0.006 3.994 21 C -0.122 4.122 22 C -0.042 4.042 23 C -0.174 4.174 24 C -0.160 4.160 25 C -0.119 4.119 26 C -0.078 4.078 27 C -0.168 4.168 28 H 0.084 0.916 29 H 0.114 0.886 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.160 0.840 33 H 0.110 0.890 34 H 0.248 0.752 35 H 0.090 0.910 36 H 0.093 0.907 37 H 0.083 0.917 38 H 0.142 0.858 39 H 0.148 0.852 40 H 0.089 0.911 41 H 0.086 0.914 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.185 -13.308 2.891 13.986 hybrid contribution 0.338 0.700 -0.727 1.065 sum 3.523 -12.608 2.164 13.268 Atomic orbital electron populations 1.20475 0.88170 1.04053 1.01794 1.21094 0.96682 0.89070 1.06191 1.22560 0.80084 0.95972 1.05112 1.16444 0.86391 0.80854 0.86015 1.90652 1.15216 1.81138 1.56925 1.43400 1.03154 1.06296 1.59178 1.19976 0.99422 0.79325 1.43346 0.86658 1.25444 0.95609 1.01216 0.95204 1.69742 1.10045 1.34210 1.37487 0.85610 0.79061 0.80213 0.78404 1.18806 1.20237 1.20480 1.21118 0.84335 1.03214 0.90646 1.23539 0.78696 0.70195 0.93321 1.90614 1.55119 1.46713 1.47477 1.84500 1.31137 1.83984 1.34369 1.84366 1.27878 1.19850 1.76125 1.19659 0.94887 0.82226 1.02578 1.19649 0.92539 0.93556 1.06428 1.19058 0.96160 0.90490 0.98523 1.20905 0.93121 1.00800 1.02588 1.20536 0.91866 0.99216 1.04358 1.20712 0.97086 0.93046 1.01042 1.18780 0.93336 0.91243 1.04472 1.20721 0.91649 1.01743 1.02640 0.91618 0.88556 0.92032 0.91283 0.83979 0.88970 0.75249 0.91047 0.90743 0.91702 0.85797 0.85244 0.91089 0.91435 0.91031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.54 9.40 36.01 0.34 -1.20 16 2 C -0.13 -2.51 6.39 -102.24 -0.65 -3.16 16 3 C 0.01 0.29 6.74 -36.94 -0.25 0.04 16 4 C 0.51 13.18 7.35 -12.80 -0.09 13.08 16 5 O -0.55 -15.14 14.14 5.19 0.07 -15.07 16 6 N -0.40 -10.46 2.18 -117.54 -0.26 -10.72 16 7 C -0.29 -7.88 9.38 -15.03 -0.14 -8.02 16 8 H 0.12 3.17 7.35 -52.48 -0.39 2.78 16 9 C 0.03 0.73 5.08 -17.45 -0.09 0.64 16 10 N -0.88 -22.23 9.04 55.50 0.50 -21.72 16 11 Si 0.94 19.73 29.58 -169.99 -5.03 14.70 16 12 H -0.26 -5.50 7.11 56.52 0.40 -5.10 16 13 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 14 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 15 C 0.13 3.05 4.79 -5.19 -0.02 3.02 16 16 C 0.50 11.71 5.80 36.01 0.21 11.92 16 17 O -0.51 -13.97 16.98 -18.75 -0.32 -14.29 16 18 O -0.53 -9.98 13.42 -39.24 -0.53 -10.51 16 19 O -0.18 -3.71 6.46 2.70 0.02 -3.69 16 20 C 0.05 0.99 7.07 -38.35 -0.27 0.72 16 21 C -0.12 -2.15 6.15 -105.19 -0.65 -2.79 16 22 C -0.04 -0.60 5.88 -104.65 -0.62 -1.22 16 23 C -0.12 -1.33 9.58 36.01 0.35 -0.99 16 24 C -0.14 -1.74 9.60 -39.94 -0.38 -2.12 16 25 C -0.10 -1.24 9.67 -39.51 -0.38 -1.62 16 26 C -0.08 -1.14 5.89 -104.50 -0.62 -1.76 16 27 C -0.11 -1.36 10.02 36.00 0.36 -1.00 16 28 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.10 1.92 5.99 -51.93 -0.31 1.61 16 30 H 0.06 0.89 5.74 -51.93 -0.30 0.59 16 31 H 0.28 6.62 8.31 -40.82 -0.34 6.28 16 32 H 0.14 3.32 6.02 -51.93 -0.31 3.00 16 33 H 0.09 1.94 5.24 -51.93 -0.27 1.66 16 34 H 0.39 5.74 9.10 45.56 0.41 6.15 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.07 0.87 5.48 -51.92 -0.28 0.59 16 37 H 0.06 0.58 8.04 -51.93 -0.42 0.17 16 38 H 0.12 1.15 8.05 -52.49 -0.42 0.73 16 39 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 40 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.07 0.64 8.09 -51.92 -0.42 0.22 16 42 H 0.07 0.95 8.09 -51.93 -0.42 0.53 16 LS Contribution 349.89 15.07 5.27 5.27 Total: -1.00 -32.77 349.89 -7.13 -39.90 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -3.95 Total: 10.57 kcal Atomic # 6 Polarization: 8.46 SS G_CDS: -2.91 Total: 5.55 kcal Atomic # 7 Polarization: -32.69 SS G_CDS: 0.25 Total: -32.44 kcal Atomic # 8 Polarization: -42.79 SS G_CDS: -0.75 Total: -43.55 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -5.03 Total: 14.70 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.77 -7.13 -39.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000738578210.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.003 kcal (2) G-P(sol) polarization free energy of solvation -32.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds