Wall clock time and date at job start Tue Mar 31 2020 16:24:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50702 * 109.46784 * 2 1 4 4 C 1.34322 * 126.44546 * 90.00184 * 3 2 1 5 5 N 1.34488 * 107.66899 * 179.76075 * 4 3 2 6 6 C 1.30251 * 108.69760 * 0.42320 * 5 4 3 7 7 C 1.50707 * 125.61911 * 179.83604 * 6 5 4 8 8 O 1.45203 * 109.46921 * 89.69316 * 7 6 5 9 9 C 1.34226 * 116.99696 * 180.02562 * 8 7 6 10 10 O 1.20825 * 120.00352 * 359.97438 * 9 8 7 11 11 C 1.50697 * 119.99946 * 179.97438 * 9 8 7 12 12 C 1.50695 * 109.47436 * 179.97438 * 11 9 8 13 13 C 1.38300 * 119.93634 * 269.73208 * 12 11 9 14 14 C 1.38103 * 120.07235 * 179.72038 * 13 12 11 15 15 C 1.38881 * 119.92859 * 0.56979 * 14 13 12 16 16 O 1.35743 * 120.07033 * 179.67702 * 15 14 13 17 17 C 1.34829 * 117.00323 * 174.48588 * 16 15 14 18 18 H 1.08000 * 119.99772 * 5.06302 * 17 16 15 19 19 C 1.38655 * 120.00285 * 185.06067 * 17 16 15 20 20 N 1.31556 * 119.99986 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99817 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47529 * 359.97438 * 21 19 17 23 23 H 1.48504 * 109.47049 * 119.99936 * 21 19 17 24 24 H 1.48497 * 109.46877 * 239.99598 * 21 19 17 25 25 C 1.38884 * 119.86119 * 359.70391 * 15 14 13 26 26 C 1.38100 * 119.93123 * 0.02562 * 25 15 14 27 27 O 1.33967 * 108.76437 * 359.57248 * 6 5 4 28 28 H 1.09010 * 109.47021 * 60.00163 * 1 2 3 29 29 H 1.08994 * 109.46937 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47103 * 300.00605 * 1 2 3 31 31 H 1.09000 * 109.46750 * 240.00069 * 2 1 3 32 32 H 1.08998 * 109.46838 * 119.99473 * 2 1 3 33 33 H 1.08001 * 126.16594 * 0.02562 * 4 3 2 34 34 H 1.09001 * 109.46923 * 329.69364 * 7 6 5 35 35 H 1.09000 * 109.47007 * 209.69589 * 7 6 5 36 36 H 1.08999 * 109.47119 * 60.00078 * 11 9 8 37 37 H 1.09004 * 109.47334 * 300.00224 * 11 9 8 38 38 H 1.08004 * 119.96372 * 359.97187 * 13 12 11 39 39 H 1.07998 * 120.03412 * 180.26808 * 14 13 12 40 40 H 0.97002 * 119.99992 * 180.02562 * 20 19 17 41 41 H 1.07996 * 120.03050 * 179.97438 * 25 15 14 42 42 H 1.08003 * 119.96708 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2983 2.1732 1.0805 5 7 2.7277 3.3719 0.6476 6 6 2.7215 3.3722 -0.6549 7 6 3.1289 4.5263 -1.5342 8 8 4.5506 4.4410 -1.8169 9 6 5.0763 5.4018 -2.5929 10 8 4.3718 6.2846 -3.0222 11 6 6.5452 5.3794 -2.9288 12 6 6.8777 6.5581 -3.8070 13 6 6.8028 6.4367 -5.1826 14 6 7.1014 7.5167 -5.9899 15 6 7.4886 8.7222 -5.4193 16 8 7.7890 9.7836 -6.2103 17 6 8.0462 10.9541 -5.5925 18 1 8.0884 10.9977 -4.5142 19 6 8.2566 12.1019 -6.3414 20 7 8.2048 12.0489 -7.6549 21 14 8.6137 13.7233 -5.4853 22 1 8.6169 13.5166 -4.0148 23 1 9.9413 14.2294 -5.9174 24 1 7.5662 14.7132 -5.8433 25 6 7.5684 8.8393 -4.0377 26 6 7.2631 7.7573 -3.2357 27 8 2.2988 2.1757 -1.0841 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5137 0.8900 33 1 2.1911 1.8687 2.1112 34 1 2.9157 5.4653 -1.0233 35 1 2.5695 4.4861 -2.4689 36 1 6.7834 4.4555 -3.4558 37 1 7.1289 5.4344 -2.0099 38 1 6.5066 5.4974 -5.6259 39 1 7.0385 7.4224 -7.0639 40 1 8.3523 12.8518 -8.1789 41 1 7.8696 9.7753 -3.5911 42 1 7.3246 7.8478 -2.1612 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000745001378.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:24:35 Heat of formation + Delta-G solvation = -66.619214 kcal Electronic energy + Delta-G solvation = -26063.025097 eV Core-core repulsion = 21976.012743 eV Total energy + Delta-G solvation = -4087.012354 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.76719 -40.55080 -38.99927 -37.06922 -36.23344 -35.14581 -34.82925 -32.55567 -31.71204 -30.77498 -30.18678 -27.70203 -26.56906 -25.16930 -24.10213 -22.62280 -22.01714 -21.78766 -21.27447 -20.22168 -18.01853 -17.89138 -17.70328 -17.03447 -16.88644 -16.57604 -16.24296 -15.34153 -15.03886 -14.72570 -14.63242 -14.37483 -14.08606 -13.72168 -13.68853 -13.57516 -13.38664 -13.10630 -12.78463 -12.71000 -12.53102 -12.28691 -11.92735 -11.81946 -11.69813 -11.56661 -11.30368 -10.97809 -10.93194 -10.89965 -10.82026 -10.63053 -10.44924 -10.41968 -9.34461 -9.18645 -8.84514 -8.18828 -7.22125 -6.46336 -4.04799 0.83768 1.85361 2.19475 2.22069 2.26516 2.27131 2.94680 3.12905 3.14584 3.19796 3.61861 3.96250 4.16810 4.40477 4.51643 4.53222 4.61511 4.71104 4.85376 4.88412 4.98929 5.07067 5.17301 5.19600 5.23642 5.27232 5.28634 5.35696 5.58007 5.60638 5.64662 5.69941 5.81022 5.83950 6.18712 6.24658 6.38734 6.67186 6.88129 7.03156 7.20269 7.29281 7.32543 7.42505 7.76236 7.80296 7.98880 8.99376 9.68680 10.71563 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.032144 B = 0.001732 C = 0.001699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.873902 B =16158.538756 C =16472.308795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.040 4.040 3 C -0.033 4.033 4 C -0.042 4.042 5 N -0.455 5.455 6 C 0.184 3.816 7 C 0.166 3.834 8 O -0.360 6.360 9 C 0.460 3.540 10 O -0.485 6.485 11 C -0.047 4.047 12 C -0.186 4.186 13 C -0.056 4.056 14 C -0.192 4.192 15 C 0.160 3.840 16 O -0.176 6.176 17 C -0.392 4.392 18 H 0.094 0.906 19 C 0.039 3.961 20 N -0.861 5.861 21 Si 0.942 3.058 22 H -0.266 1.266 23 H -0.276 1.276 24 H -0.276 1.276 25 C -0.233 4.233 26 C -0.052 4.052 27 O -0.192 6.192 28 H 0.059 0.941 29 H 0.070 0.930 30 H 0.061 0.939 31 H 0.086 0.914 32 H 0.100 0.900 33 H 0.187 0.813 34 H 0.116 0.884 35 H 0.101 0.899 36 H 0.106 0.894 37 H 0.106 0.894 38 H 0.111 0.889 39 H 0.118 0.882 40 H 0.270 0.730 41 H 0.128 0.872 42 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.217 -22.874 15.445 29.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.077 4.077 3 C -0.087 4.087 4 C -0.181 4.181 5 N -0.185 5.185 6 C -0.022 4.022 7 C 0.092 3.908 8 O -0.277 6.277 9 C 0.302 3.698 10 O -0.369 6.369 11 C -0.085 4.085 12 C -0.187 4.187 13 C -0.074 4.074 14 C -0.211 4.211 15 C 0.106 3.894 16 O -0.079 6.079 17 C -0.468 4.468 18 H 0.111 0.889 19 C -0.165 4.165 20 N -0.496 5.496 21 Si 0.766 3.234 22 H -0.191 1.191 23 H -0.201 1.201 24 H -0.201 1.201 25 C -0.253 4.253 26 C -0.070 4.070 27 O -0.078 6.078 28 H 0.078 0.922 29 H 0.088 0.912 30 H 0.080 0.920 31 H 0.104 0.896 32 H 0.118 0.882 33 H 0.204 0.796 34 H 0.134 0.866 35 H 0.119 0.881 36 H 0.124 0.876 37 H 0.125 0.875 38 H 0.129 0.871 39 H 0.136 0.864 40 H 0.080 0.920 41 H 0.146 0.854 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -11.222 -21.872 15.152 28.877 hybrid contribution -0.217 0.316 0.178 0.423 sum -11.439 -21.555 15.330 28.818 Atomic orbital electron populations 1.21817 0.93469 1.02781 1.02873 1.20125 0.96625 0.86202 1.04769 1.23636 1.04446 0.96119 0.84479 1.23137 1.04742 0.89690 1.00551 1.70449 1.16369 1.22796 1.08935 1.25465 1.00733 0.86079 0.89895 1.20818 0.80654 0.91693 0.97678 1.86564 1.24452 1.51586 1.65121 1.24348 0.92272 0.78472 0.74698 1.90734 1.61892 1.35137 1.49179 1.20116 0.86923 0.99948 1.01468 1.18619 1.12437 0.94531 0.93120 1.20428 0.97423 0.97180 0.92385 1.20162 1.09406 0.91917 0.99639 1.19409 0.91270 0.88877 0.89892 1.83974 1.74324 1.15904 1.33657 1.21403 1.49638 0.83201 0.92541 0.88912 1.25306 0.96703 0.98908 0.95599 1.70049 1.45397 1.29586 1.04542 0.85633 0.78326 0.80286 0.79106 1.19059 1.20121 1.20117 1.21118 1.10645 1.00010 0.93477 1.20548 0.96323 0.91937 0.98204 1.84404 1.63605 1.23163 1.36628 0.92160 0.91153 0.91966 0.89561 0.88184 0.79625 0.86626 0.88103 0.87588 0.87546 0.87147 0.86379 0.92029 0.85410 0.87535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.59 9.89 37.16 0.37 -0.22 16 2 C -0.04 -0.18 6.49 -27.88 -0.18 -0.36 16 3 C -0.03 -0.28 6.64 -35.69 -0.24 -0.52 16 4 C -0.04 -0.38 11.80 -17.77 -0.21 -0.59 16 5 N -0.45 -5.49 11.29 -11.10 -0.13 -5.62 16 6 C 0.18 2.14 7.98 -12.94 -0.10 2.03 16 7 C 0.17 1.84 6.09 36.01 0.22 2.06 16 8 O -0.36 -4.53 10.20 -39.25 -0.40 -4.93 16 9 C 0.46 6.45 7.95 36.00 0.29 6.74 16 10 O -0.48 -8.46 15.78 -18.75 -0.30 -8.76 16 11 C -0.05 -0.59 5.94 -29.04 -0.17 -0.76 16 12 C -0.19 -3.15 4.38 -104.58 -0.46 -3.60 16 13 C -0.06 -1.00 9.69 -39.61 -0.38 -1.38 16 14 C -0.19 -4.09 9.99 -39.39 -0.39 -4.49 16 15 C 0.16 3.90 6.65 -39.10 -0.26 3.64 16 16 O -0.18 -5.05 9.76 0.07 0.00 -5.05 16 17 C -0.39 -11.01 9.49 30.89 0.29 -10.72 16 18 H 0.09 2.42 5.20 -52.49 -0.27 2.14 16 19 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 20 N -0.86 -25.31 13.67 55.48 0.76 -24.55 16 21 Si 0.94 20.63 29.55 -169.99 -5.02 15.60 16 22 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 23 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 24 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 25 C -0.23 -5.13 9.17 -39.39 -0.36 -5.49 16 26 C -0.05 -0.96 9.69 -39.61 -0.38 -1.34 16 27 O -0.19 -2.08 10.78 5.34 0.06 -2.02 16 28 H 0.06 0.30 8.14 -51.92 -0.42 -0.13 16 29 H 0.07 0.17 8.14 -51.93 -0.42 -0.25 16 30 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.10 0.25 8.14 -51.93 -0.42 -0.18 16 33 H 0.19 1.09 8.06 -52.49 -0.42 0.66 16 34 H 0.12 1.22 8.13 -51.93 -0.42 0.80 16 35 H 0.10 0.98 8.13 -51.93 -0.42 0.56 16 36 H 0.11 1.07 8.08 -51.93 -0.42 0.65 16 37 H 0.11 1.11 8.08 -51.93 -0.42 0.69 16 38 H 0.11 1.62 8.06 -52.48 -0.42 1.20 16 39 H 0.12 2.42 8.06 -52.49 -0.42 2.00 16 40 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 41 H 0.13 2.81 5.64 -52.49 -0.30 2.51 16 42 H 0.11 1.67 8.06 -52.48 -0.42 1.25 16 LS Contribution 374.22 15.07 5.64 5.64 Total: -1.00 -34.69 374.22 -6.66 -41.35 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -5.19 Total: 2.34 kcal Atomic # 6 Polarization: -11.93 SS G_CDS: -2.07 Total: -14.01 kcal Atomic # 7 Polarization: -30.80 SS G_CDS: 0.63 Total: -30.17 kcal Atomic # 8 Polarization: -20.12 SS G_CDS: -0.64 Total: -20.76 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.69 -6.66 -41.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745001378.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.270 kcal (2) G-P(sol) polarization free energy of solvation -34.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds