Wall clock time and date at job start Tue Mar 31 2020 15:54:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36649 * 119.77597 * 2 1 4 4 C 1.39677 * 119.71041 * 180.02562 * 3 2 1 5 5 C 1.46222 * 134.18837 * 179.97438 * 4 3 2 6 6 C 1.35884 * 106.07771 * 180.02562 * 5 4 3 7 7 C 1.46808 * 125.13564 * 179.97438 * 6 5 4 8 8 O 1.21582 * 120.00342 * 0.02562 * 7 6 5 9 9 O 1.34862 * 119.99967 * 180.02562 * 7 6 5 10 10 C 1.45199 * 116.99870 * 179.97438 * 9 7 6 11 11 C 1.50710 * 109.47207 * 179.97438 * 10 9 7 12 12 O 1.21282 * 119.99587 * 0.02562 * 11 10 9 13 13 N 1.34767 * 120.00028 * 180.02562 * 11 10 9 14 14 C 1.46503 * 119.99867 * 180.02562 * 13 11 10 15 15 C 1.50700 * 109.47087 * 179.97438 * 14 13 11 16 16 H 1.07992 * 120.00284 * 359.97438 * 15 14 13 17 17 C 1.37878 * 119.99814 * 179.97438 * 15 14 13 18 18 N 1.31517 * 120.00180 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 120.00122 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47344 * 90.00080 * 19 17 15 21 21 H 1.48501 * 109.47414 * 210.00246 * 19 17 15 22 22 H 1.48506 * 109.46955 * 330.00081 * 19 17 15 23 23 O 1.34962 * 109.73050 * 0.02562 * 6 5 4 24 24 C 1.34719 * 110.85928 * 0.02562 * 23 6 5 25 25 C 1.38992 * 133.23632 * 180.02562 * 24 23 6 26 26 C 1.37838 * 119.85451 * 180.28016 * 25 24 23 27 27 C 1.50696 * 119.62412 * 179.71955 * 26 25 24 28 28 H 1.09005 * 109.46700 * 90.00268 * 1 2 3 29 29 H 1.09006 * 109.47283 * 209.99931 * 1 2 3 30 30 H 1.08989 * 109.47742 * 330.00131 * 1 2 3 31 31 H 1.08002 * 120.14608 * 0.03977 * 3 2 1 32 32 H 1.07999 * 126.95890 * 0.05026 * 5 4 3 33 33 H 1.08992 * 109.47849 * 299.99892 * 10 9 7 34 34 H 1.08999 * 109.47128 * 60.00597 * 10 9 7 35 35 H 0.97001 * 120.00825 * 359.97438 * 13 11 10 36 36 H 1.09002 * 109.47110 * 299.99419 * 14 13 11 37 37 H 1.09004 * 109.47232 * 59.99531 * 14 13 11 38 38 H 0.96996 * 119.99891 * 179.97438 * 18 17 15 39 39 H 1.08002 * 120.07057 * 359.97438 * 25 24 23 40 40 H 1.09002 * 109.46875 * 89.99726 * 27 26 25 41 41 H 1.08999 * 109.46753 * 209.99431 * 27 26 25 42 42 H 1.08994 * 109.47435 * 329.99659 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1856 1.1861 0.0000 4 6 3.5824 1.1845 -0.0005 5 6 4.6028 2.2318 -0.0012 6 6 5.8006 1.5902 -0.0021 7 6 7.1123 2.2495 -0.0035 8 8 7.1826 3.4633 -0.0035 9 8 8.2393 1.5089 -0.0048 10 6 9.5007 2.2280 -0.0067 11 6 10.6409 1.2425 -0.0074 12 8 10.4127 0.0513 -0.0068 13 7 11.9139 1.6848 -0.0086 14 6 13.0222 0.7268 -0.0098 15 6 14.3314 1.4732 -0.0117 16 1 14.3373 2.5531 -0.0124 17 6 15.5217 0.7773 -0.0125 18 7 15.5145 -0.5379 -0.0122 19 14 17.1445 1.7024 -0.0156 20 1 17.5764 1.9490 1.3836 21 1 18.1742 0.8935 -0.7162 22 1 16.9731 3.0002 -0.7167 23 8 5.6024 0.2552 -0.0026 24 6 4.2867 -0.0344 -0.0027 25 6 3.5745 -1.2280 -0.0027 26 6 2.1963 -1.2047 -0.0086 27 6 1.4294 -2.5019 -0.0150 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3634 0.8899 0.5137 31 1 1.6443 2.1207 0.0006 32 1 4.4378 3.2991 -0.0006 33 1 9.5607 2.8541 -0.8969 34 1 9.5631 2.8545 0.8830 35 1 12.0964 2.6375 -0.0095 36 1 12.9620 0.1004 0.8802 37 1 12.9602 0.1004 -0.8998 38 1 16.3519 -1.0274 -0.0132 39 1 4.0999 -2.1716 -0.0031 40 1 1.2401 -2.8171 1.0112 41 1 0.4806 -2.3604 -0.5325 42 1 2.0128 -3.2664 -0.5281 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000745583944.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:54:51 Heat of formation + Delta-G solvation = -98.416590 kcal Electronic energy + Delta-G solvation = -26125.905155 eV Core-core repulsion = 22037.513963 eV Total energy + Delta-G solvation = -4088.391192 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.85075 -40.54078 -39.07882 -38.70338 -36.58339 -34.26741 -33.78220 -32.70181 -32.42377 -31.57509 -29.46277 -27.64454 -27.46631 -26.49826 -23.94396 -22.64387 -22.30213 -21.78937 -20.68466 -19.97356 -18.65782 -17.69076 -17.44944 -17.09041 -16.71225 -16.19877 -15.79847 -15.61157 -15.31331 -15.10588 -14.68700 -14.50512 -14.42873 -14.32119 -13.49294 -13.45766 -13.27999 -13.07751 -13.07521 -12.77438 -12.60763 -12.59085 -12.00899 -11.93319 -11.87440 -11.80533 -11.33839 -11.18990 -11.01620 -10.94453 -10.81806 -10.51531 -10.35195 -9.44925 -9.21242 -8.81519 -8.79106 -8.59499 -8.00424 -6.20067 -4.27674 0.07686 0.91824 1.33152 1.85353 2.50464 2.57205 3.14982 3.19511 3.22969 3.29156 3.31501 3.79938 4.14467 4.23188 4.31218 4.34055 4.50830 4.61180 4.65648 4.78588 4.94710 5.05059 5.10011 5.14168 5.15133 5.17486 5.18167 5.22158 5.29868 5.36057 5.49226 5.56788 5.70198 5.82068 5.89745 6.01236 6.09421 6.21414 6.67461 7.20918 7.27617 7.39180 7.45015 7.60353 7.91151 8.47923 8.69895 8.94568 9.38721 10.90038 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.030439 B = 0.001772 C = 0.001678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.657996 B =15798.817018 C =16687.416567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.106 4.106 3 C -0.055 4.055 4 C -0.150 4.150 5 C -0.099 4.099 6 C -0.004 4.004 7 C 0.548 3.452 8 O -0.483 6.483 9 O -0.313 6.313 10 C 0.048 3.952 11 C 0.499 3.501 12 O -0.531 6.531 13 N -0.705 5.705 14 C 0.251 3.749 15 C -0.546 4.546 16 H 0.065 0.935 17 C 0.064 3.936 18 N -0.884 5.884 19 Si 0.906 3.094 20 H -0.278 1.278 21 H -0.284 1.284 22 H -0.272 1.272 23 O -0.165 6.165 24 C 0.078 3.922 25 C -0.110 4.110 26 C -0.045 4.045 27 C -0.118 4.118 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.132 0.868 32 H 0.175 0.825 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.393 0.607 36 H 0.030 0.970 37 H 0.030 0.970 38 H 0.267 0.733 39 H 0.139 0.861 40 H 0.077 0.923 41 H 0.074 0.926 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.538 3.270 0.018 31.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.107 4.107 3 C -0.073 4.073 4 C -0.151 4.151 5 C -0.118 4.118 6 C -0.052 4.052 7 C 0.392 3.608 8 O -0.373 6.373 9 O -0.227 6.227 10 C -0.030 4.030 11 C 0.282 3.718 12 O -0.408 6.408 13 N -0.356 5.356 14 C 0.131 3.869 15 C -0.584 4.584 16 H 0.083 0.917 17 C -0.140 4.140 18 N -0.521 5.521 19 Si 0.733 3.267 20 H -0.204 1.204 21 H -0.210 1.210 22 H -0.197 1.197 23 O -0.066 6.066 24 C 0.030 3.970 25 C -0.128 4.128 26 C -0.045 4.045 27 C -0.174 4.174 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.150 0.850 32 H 0.192 0.808 33 H 0.120 0.880 34 H 0.120 0.880 35 H 0.226 0.774 36 H 0.048 0.952 37 H 0.048 0.952 38 H 0.076 0.924 39 H 0.157 0.843 40 H 0.096 0.904 41 H 0.093 0.907 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -31.254 2.365 0.013 31.343 hybrid contribution 1.245 1.187 0.008 1.721 sum -30.009 3.553 0.022 30.218 Atomic orbital electron populations 1.20803 0.90424 1.03121 1.02550 1.19398 0.96514 0.92019 1.02731 1.20176 0.90827 0.98357 0.97921 1.19816 0.94601 0.92101 1.08616 1.22736 0.88675 1.00289 1.00125 1.20538 0.92560 0.81288 1.10797 1.19333 0.83075 0.84782 0.73601 1.90952 1.86905 1.13151 1.46275 1.86734 1.13811 1.39376 1.82828 1.23014 0.80276 0.94629 1.05038 1.19823 0.83936 0.89094 0.78967 1.90731 1.84311 1.16410 1.49355 1.46351 1.05207 1.11580 1.72436 1.19193 0.81620 0.88027 0.98092 1.21206 0.90275 0.93353 1.53587 0.91731 1.24956 0.99512 0.94923 0.94593 1.69974 1.27599 1.05951 1.48625 0.86382 0.82523 0.79559 0.78246 1.20428 1.20976 1.19718 1.84197 1.24221 1.22814 1.75393 1.19751 0.80836 0.95727 1.00713 1.19867 0.92402 0.95112 1.05408 1.19612 0.91952 0.95581 0.97360 1.20886 1.00058 0.93489 1.02969 0.91001 0.91045 0.91369 0.84989 0.80762 0.87985 0.87993 0.77380 0.95202 0.95203 0.92360 0.84315 0.90446 0.90689 0.90901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.48 9.15 36.01 0.33 -0.15 16 2 C -0.11 -0.77 5.85 -104.99 -0.61 -1.38 16 3 C -0.05 -0.45 9.68 -39.62 -0.38 -0.83 16 4 C -0.15 -1.61 6.38 -105.20 -0.67 -2.28 16 5 C -0.10 -1.07 10.80 -37.22 -0.40 -1.48 16 6 C 0.00 -0.05 7.10 -36.96 -0.26 -0.31 16 7 C 0.55 8.10 7.94 34.20 0.27 8.37 16 8 O -0.48 -7.23 16.62 -19.33 -0.32 -7.55 16 9 O -0.31 -5.30 9.77 -48.44 -0.47 -5.77 16 10 C 0.05 0.73 5.96 36.01 0.21 0.94 16 11 C 0.50 10.11 7.91 -10.98 -0.09 10.02 16 12 O -0.53 -13.27 16.50 -14.10 -0.23 -13.50 16 13 N -0.71 -14.57 5.55 -61.47 -0.34 -14.92 16 14 C 0.25 6.58 5.43 -5.19 -0.03 6.55 16 15 C -0.55 -14.63 9.28 -34.44 -0.32 -14.95 16 16 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 17 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 18 N -0.88 -25.88 13.29 55.43 0.74 -25.14 16 19 Si 0.91 20.68 29.54 -169.99 -5.02 15.66 16 20 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 22 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 23 O -0.17 -2.40 10.60 1.92 0.02 -2.38 16 24 C 0.08 0.95 7.41 -38.34 -0.28 0.67 16 25 C -0.11 -1.06 9.70 -39.45 -0.38 -1.44 16 26 C -0.04 -0.34 5.88 -104.56 -0.61 -0.96 16 27 C -0.12 -0.56 9.15 36.00 0.33 -0.23 16 28 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.07 0.24 6.69 -51.93 -0.35 -0.11 16 30 H 0.07 0.24 8.08 -51.94 -0.42 -0.18 16 31 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 32 H 0.17 1.46 8.06 -52.49 -0.42 1.04 16 33 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 34 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 35 H 0.39 6.75 8.32 -40.82 -0.34 6.41 16 36 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 39 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 40 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 41 H 0.07 0.26 6.68 -51.93 -0.35 -0.09 16 42 H 0.07 0.31 8.08 -51.93 -0.42 -0.11 16 LS Contribution 373.02 15.07 5.62 5.62 Total: -1.00 -34.55 373.02 -8.22 -42.77 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: -5.21 Total: 0.99 kcal Atomic # 6 Polarization: 7.22 SS G_CDS: -3.00 Total: 4.22 kcal Atomic # 7 Polarization: -40.45 SS G_CDS: 0.40 Total: -40.06 kcal Atomic # 8 Polarization: -28.20 SS G_CDS: -1.01 Total: -29.21 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -34.55 -8.22 -42.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745583944.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.644 kcal (2) G-P(sol) polarization free energy of solvation -34.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds