Wall clock time and date at job start Tue Mar 31 2020 15:54:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36649 * 119.77597 * 2 1 4 4 C 1.39677 * 119.71041 * 180.02562 * 3 2 1 5 5 C 1.46222 * 134.18837 * 179.97438 * 4 3 2 6 6 C 1.35884 * 106.07771 * 180.02562 * 5 4 3 7 7 C 1.46808 * 125.13564 * 179.97438 * 6 5 4 8 8 O 1.21582 * 120.00342 * 0.02562 * 7 6 5 9 9 O 1.34862 * 119.99967 * 180.02562 * 7 6 5 10 10 C 1.45199 * 116.99870 * 179.97438 * 9 7 6 11 11 C 1.50710 * 109.47207 * 179.97438 * 10 9 7 12 12 O 1.21282 * 119.99587 * 0.02562 * 11 10 9 13 13 N 1.34767 * 120.00028 * 180.02562 * 11 10 9 14 14 C 1.46503 * 119.99867 * 180.02562 * 13 11 10 15 15 C 1.50700 * 109.47087 * 179.97438 * 14 13 11 16 16 H 1.07992 * 120.00284 * 359.97438 * 15 14 13 17 17 C 1.37878 * 119.99814 * 179.97438 * 15 14 13 18 18 N 1.31517 * 120.00180 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 120.00122 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47344 * 90.00080 * 19 17 15 21 21 H 1.48501 * 109.47414 * 210.00246 * 19 17 15 22 22 H 1.48506 * 109.46955 * 330.00081 * 19 17 15 23 23 O 1.34962 * 109.73050 * 0.02562 * 6 5 4 24 24 C 1.34719 * 110.85928 * 0.02562 * 23 6 5 25 25 C 1.38992 * 133.23632 * 180.02562 * 24 23 6 26 26 C 1.37838 * 119.85451 * 180.28016 * 25 24 23 27 27 C 1.50696 * 119.62412 * 179.71955 * 26 25 24 28 28 H 1.09005 * 109.46700 * 90.00268 * 1 2 3 29 29 H 1.09006 * 109.47283 * 209.99931 * 1 2 3 30 30 H 1.08989 * 109.47742 * 330.00131 * 1 2 3 31 31 H 1.08002 * 120.14608 * 0.03977 * 3 2 1 32 32 H 1.07999 * 126.95890 * 0.05026 * 5 4 3 33 33 H 1.08992 * 109.47849 * 299.99892 * 10 9 7 34 34 H 1.08999 * 109.47128 * 60.00597 * 10 9 7 35 35 H 0.97001 * 120.00825 * 359.97438 * 13 11 10 36 36 H 1.09002 * 109.47110 * 299.99419 * 14 13 11 37 37 H 1.09004 * 109.47232 * 59.99531 * 14 13 11 38 38 H 0.96996 * 119.99891 * 179.97438 * 18 17 15 39 39 H 1.08002 * 120.07057 * 359.97438 * 25 24 23 40 40 H 1.09002 * 109.46875 * 89.99726 * 27 26 25 41 41 H 1.08999 * 109.46753 * 209.99431 * 27 26 25 42 42 H 1.08994 * 109.47435 * 329.99659 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1856 1.1861 0.0000 4 6 3.5824 1.1845 -0.0005 5 6 4.6028 2.2318 -0.0012 6 6 5.8006 1.5902 -0.0021 7 6 7.1123 2.2495 -0.0035 8 8 7.1826 3.4633 -0.0035 9 8 8.2393 1.5089 -0.0048 10 6 9.5007 2.2280 -0.0067 11 6 10.6409 1.2425 -0.0074 12 8 10.4127 0.0513 -0.0068 13 7 11.9139 1.6848 -0.0086 14 6 13.0222 0.7268 -0.0098 15 6 14.3314 1.4732 -0.0117 16 1 14.3373 2.5531 -0.0124 17 6 15.5217 0.7773 -0.0125 18 7 15.5145 -0.5379 -0.0122 19 14 17.1445 1.7024 -0.0156 20 1 17.5764 1.9490 1.3836 21 1 18.1742 0.8935 -0.7162 22 1 16.9731 3.0002 -0.7167 23 8 5.6024 0.2552 -0.0026 24 6 4.2867 -0.0344 -0.0027 25 6 3.5745 -1.2280 -0.0027 26 6 2.1963 -1.2047 -0.0086 27 6 1.4294 -2.5019 -0.0150 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3634 0.8899 0.5137 31 1 1.6443 2.1207 0.0006 32 1 4.4378 3.2991 -0.0006 33 1 9.5607 2.8541 -0.8969 34 1 9.5631 2.8545 0.8830 35 1 12.0964 2.6375 -0.0095 36 1 12.9620 0.1004 0.8802 37 1 12.9602 0.1004 -0.8998 38 1 16.3519 -1.0274 -0.0132 39 1 4.0999 -2.1716 -0.0031 40 1 1.2401 -2.8171 1.0112 41 1 0.4806 -2.3604 -0.5325 42 1 2.0128 -3.2664 -0.5281 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000745583944.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:54:50 Heat of formation + Delta-G solvation = -120.022029 kcal Electronic energy + Delta-G solvation = -26126.842037 eV Core-core repulsion = 22037.513963 eV Total energy + Delta-G solvation = -4089.328074 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.70562 -41.73876 -40.42302 -39.69556 -37.81886 -36.22401 -34.52845 -34.44509 -33.31754 -32.32271 -30.94996 -28.93019 -28.07783 -27.75275 -25.04067 -24.28712 -23.14191 -22.58526 -21.71567 -21.62986 -19.72010 -19.16261 -18.48226 -18.20194 -18.02355 -17.42659 -17.26860 -16.97379 -16.35547 -16.21994 -16.17273 -15.90697 -15.14714 -14.97704 -14.81345 -14.55362 -14.27846 -14.21308 -14.02045 -13.86617 -13.74264 -13.58428 -13.23758 -13.01881 -12.95276 -12.72586 -12.49207 -12.34499 -12.31707 -12.23856 -12.07445 -11.95631 -11.51441 -11.31962 -10.98231 -10.83160 -9.96899 -9.49374 -9.35004 -8.30582 -6.47621 -0.77727 0.21725 0.49924 0.81929 1.43586 1.45922 1.49596 1.51877 1.57244 1.57841 2.30899 2.49316 2.52016 3.04696 3.21646 3.47509 3.60308 3.71150 3.76260 3.89251 3.98579 3.99907 4.02692 4.17880 4.36366 4.63430 4.69184 4.72967 4.83041 4.83725 4.90882 4.95440 5.06432 5.14111 5.16114 5.19290 5.23166 5.27276 5.38982 5.50197 5.58762 5.61510 5.80144 5.92625 6.27467 6.60969 6.73944 7.18472 7.33095 8.81612 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.030439 B = 0.001772 C = 0.001678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.657996 B =15798.817018 C =16687.416567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.107 4.107 3 C -0.053 4.053 4 C -0.168 4.168 5 C -0.068 4.068 6 C -0.046 4.046 7 C 0.554 3.446 8 O -0.489 6.489 9 O -0.342 6.342 10 C 0.059 3.941 11 C 0.498 3.502 12 O -0.586 6.586 13 N -0.695 5.695 14 C 0.265 3.735 15 C -0.558 4.558 16 H 0.088 0.912 17 C 0.004 3.996 18 N -0.931 5.931 19 Si 0.987 3.013 20 H -0.271 1.271 21 H -0.285 1.285 22 H -0.255 1.255 23 O -0.199 6.199 24 C 0.051 3.949 25 C -0.135 4.135 26 C -0.035 4.035 27 C -0.119 4.119 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.161 0.839 32 H 0.201 0.799 33 H 0.135 0.865 34 H 0.135 0.865 35 H 0.414 0.586 36 H -0.008 1.008 37 H -0.008 1.008 38 H 0.269 0.731 39 H 0.141 0.859 40 H 0.090 0.910 41 H 0.094 0.906 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.909 5.716 0.019 34.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.107 4.107 3 C -0.070 4.070 4 C -0.169 4.169 5 C -0.087 4.087 6 C -0.093 4.093 7 C 0.399 3.601 8 O -0.379 6.379 9 O -0.257 6.257 10 C -0.017 4.017 11 C 0.284 3.716 12 O -0.467 6.467 13 N -0.347 5.347 14 C 0.143 3.857 15 C -0.595 4.595 16 H 0.106 0.894 17 C -0.196 4.196 18 N -0.569 5.569 19 Si 0.810 3.190 20 H -0.196 1.196 21 H -0.211 1.211 22 H -0.178 1.178 23 O -0.102 6.102 24 C 0.003 3.997 25 C -0.153 4.153 26 C -0.035 4.035 27 C -0.175 4.175 28 H 0.102 0.898 29 H 0.102 0.898 30 H 0.099 0.901 31 H 0.179 0.821 32 H 0.218 0.782 33 H 0.153 0.847 34 H 0.152 0.848 35 H 0.251 0.749 36 H 0.010 0.990 37 H 0.010 0.990 38 H 0.078 0.922 39 H 0.158 0.842 40 H 0.108 0.892 41 H 0.113 0.887 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -33.659 4.876 0.014 34.011 hybrid contribution 1.738 0.319 0.010 1.768 sum -31.921 5.195 0.024 32.341 Atomic orbital electron populations 1.20895 0.87756 1.04449 1.03674 1.19858 0.98374 0.91386 1.01098 1.20577 0.89722 1.00100 0.96651 1.20064 0.95734 0.91271 1.09821 1.23119 0.87678 1.01398 0.96501 1.20552 0.92700 0.81480 1.14603 1.19411 0.82796 0.84715 0.73141 1.90925 1.86969 1.12993 1.46991 1.86712 1.14741 1.40786 1.83471 1.22946 0.78019 0.92652 1.08119 1.20676 0.84779 0.89268 0.76885 1.90706 1.85165 1.19272 1.51523 1.46004 1.04494 1.11818 1.72383 1.18652 0.83960 0.88501 0.94588 1.21617 0.90282 0.94511 1.53118 0.89405 1.26079 1.03995 0.95739 0.93784 1.70140 1.28833 1.08123 1.49811 0.85121 0.76816 0.78467 0.78582 1.19617 1.21052 1.17830 1.84124 1.25836 1.23540 1.76651 1.20266 0.80313 0.97362 1.01797 1.20156 0.93513 0.94704 1.06952 1.20063 0.91202 0.97392 0.94887 1.21003 1.00483 0.91922 1.04057 0.89804 0.89762 0.90135 0.82123 0.78153 0.84747 0.84755 0.74908 0.99015 0.99007 0.92206 0.84163 0.89185 0.88713 0.90660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.52 9.15 71.24 0.65 0.13 16 2 C -0.11 -1.27 5.85 -20.10 -0.12 -1.39 16 3 C -0.05 -0.74 9.68 22.25 0.22 -0.52 16 4 C -0.17 -3.49 6.38 -20.24 -0.13 -3.62 16 5 C -0.07 -1.43 10.80 23.80 0.26 -1.18 16 6 C -0.05 -1.29 7.10 23.97 0.17 -1.12 16 7 C 0.55 16.59 7.94 70.06 0.56 17.14 16 8 O -0.49 -14.15 16.62 19.57 0.33 -13.83 16 9 O -0.34 -11.87 9.77 -50.58 -0.49 -12.36 16 10 C 0.06 1.76 5.96 71.24 0.42 2.18 16 11 C 0.50 20.73 7.91 87.66 0.69 21.42 16 12 O -0.59 -31.03 16.50 15.76 0.26 -30.77 16 13 N -0.70 -29.18 5.55 -466.77 -2.59 -31.77 16 14 C 0.27 14.56 5.43 85.63 0.46 15.03 16 15 C -0.56 -30.07 9.28 25.60 0.24 -29.83 16 16 H 0.09 4.22 7.60 -2.91 -0.02 4.20 16 17 C 0.00 0.21 5.46 84.65 0.46 0.67 16 18 N -0.93 -56.15 13.29 21.45 0.28 -55.87 16 19 Si 0.99 42.13 29.54 68.60 2.03 44.16 16 20 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 21 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 22 H -0.25 -10.07 7.11 99.48 0.71 -9.36 16 23 O -0.20 -6.24 10.60 -12.42 -0.13 -6.37 16 24 C 0.05 1.28 7.41 23.07 0.17 1.45 16 25 C -0.13 -2.70 9.70 22.36 0.22 -2.48 16 26 C -0.04 -0.49 5.88 -19.83 -0.12 -0.60 16 27 C -0.12 -0.84 9.15 71.23 0.65 -0.19 16 28 H 0.08 0.26 8.14 -2.38 -0.02 0.24 16 29 H 0.08 0.22 6.69 -2.38 -0.02 0.20 16 30 H 0.08 0.23 8.08 -2.39 -0.02 0.21 16 31 H 0.16 1.25 8.06 -2.91 -0.02 1.23 16 32 H 0.20 2.94 8.06 -2.91 -0.02 2.92 16 33 H 0.13 3.17 8.14 -2.39 -0.02 3.15 16 34 H 0.13 3.17 8.14 -2.39 -0.02 3.15 16 35 H 0.41 13.76 8.32 -92.71 -0.77 12.99 16 36 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 37 H -0.01 -0.50 8.14 -2.38 -0.02 -0.52 16 38 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 39 H 0.14 2.56 8.06 -2.91 -0.02 2.53 16 40 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 41 H 0.09 0.33 6.68 -2.39 -0.02 0.32 16 42 H 0.07 0.53 8.08 -2.39 -0.02 0.51 16 Total: -1.00 -80.28 373.02 4.79 -75.49 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: 0.30 Total: 14.23 kcal Atomic # 6 Polarization: 12.28 SS G_CDS: 4.81 Total: 17.08 kcal Atomic # 7 Polarization: -85.33 SS G_CDS: -2.30 Total: -87.64 kcal Atomic # 8 Polarization: -63.29 SS G_CDS: -0.04 Total: -63.33 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.16 kcal Total: -80.28 4.79 -75.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745583944.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.528 kcal (2) G-P(sol) polarization free energy of solvation -80.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds