Wall clock time and date at job start Tue Mar 31 2020 16:17:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35848 * 120.90088 * 2 1 4 4 C 1.41002 * 119.82357 * 179.97438 * 3 2 1 5 5 O 1.21797 * 119.15282 * 179.97438 * 4 3 2 6 6 O 1.34220 * 121.68708 * 0.02562 * 4 3 2 7 7 C 1.35020 * 121.46709 * 359.97438 * 6 4 3 8 8 C 1.38678 * 120.73978 * 180.32427 * 7 6 4 9 9 C 1.38516 * 119.79136 * 180.20482 * 8 7 6 10 10 O 1.35746 * 119.72899 * 179.76909 * 9 8 7 11 11 C 1.42905 * 116.99351 * 179.72295 * 10 9 8 12 12 C 1.50709 * 109.46650 * 179.97438 * 11 10 9 13 13 O 1.21283 * 119.99688 * 0.02562 * 12 11 10 14 14 N 1.34779 * 119.99796 * 180.02562 * 12 11 10 15 15 C 1.46497 * 119.99943 * 180.02562 * 14 12 11 16 16 H 1.09007 * 109.47078 * 34.99474 * 15 14 12 17 17 C 1.53000 * 109.47021 * 275.00054 * 15 14 12 18 18 C 1.50694 * 109.47115 * 154.99835 * 15 14 12 19 19 H 1.08000 * 120.00563 * 359.97438 * 18 15 14 20 20 C 1.37885 * 119.99902 * 180.02562 * 18 15 14 21 21 N 1.31516 * 119.99913 * 359.97438 * 20 18 15 22 22 Si 1.86798 * 119.99766 * 179.97438 * 20 18 15 23 23 H 1.48500 * 109.47353 * 269.99586 * 22 20 18 24 24 H 1.48501 * 109.47293 * 30.00037 * 22 20 18 25 25 H 1.48504 * 109.46680 * 149.99835 * 22 20 18 26 26 C 1.39374 * 120.53973 * 359.48904 * 9 8 7 27 27 C 1.36466 * 120.42871 * 0.23406 * 26 9 8 28 28 C 1.39971 * 119.79324 * 0.02562 * 27 26 9 29 29 H 1.09002 * 109.47326 * 269.99672 * 1 2 3 30 30 H 1.08998 * 109.47247 * 30.00711 * 1 2 3 31 31 H 1.09008 * 109.46605 * 150.00098 * 1 2 3 32 32 H 1.08003 * 120.08874 * 359.97438 * 3 2 1 33 33 H 1.08009 * 120.10682 * 359.97353 * 8 7 6 34 34 H 1.08998 * 109.46927 * 60.00409 * 11 10 9 35 35 H 1.08995 * 109.47572 * 299.99969 * 11 10 9 36 36 H 0.96997 * 119.99849 * 0.02562 * 14 12 11 37 37 H 1.08995 * 109.47131 * 179.97438 * 17 15 14 38 38 H 1.09002 * 109.47106 * 299.99878 * 17 15 14 39 39 H 1.08998 * 109.47089 * 59.99825 * 17 15 14 40 40 H 0.97001 * 119.99646 * 179.97438 * 21 20 18 41 41 H 1.07995 * 119.78466 * 180.25646 * 26 9 8 42 42 H 1.08004 * 120.10167 * 179.97438 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2046 1.1657 0.0000 4 6 3.6144 1.1391 0.0005 5 8 4.2276 2.1915 0.0001 6 8 4.2978 -0.0160 0.0006 7 6 3.6656 -1.2090 0.0006 8 6 4.3868 -2.3935 0.0073 9 6 3.7180 -3.6065 0.0029 10 8 4.4252 -4.7651 0.0048 11 6 3.6763 -5.9822 0.0062 12 6 4.6232 -7.1547 0.0075 13 8 5.8214 -6.9664 0.0078 14 7 4.1386 -8.4123 0.0084 15 6 5.0591 -9.5520 0.0103 16 1 5.9419 -9.3051 0.6002 17 6 5.4784 -9.8712 -1.4260 18 6 4.3725 -10.7512 0.6115 19 1 3.3526 -10.6723 0.9579 20 6 5.0467 -11.9490 0.7202 21 7 6.2888 -12.0451 0.2988 22 14 4.1958 -13.4353 1.4660 23 1 4.4297 -13.4556 2.9324 24 1 2.7372 -13.3567 1.1984 25 1 4.7441 -14.6753 0.8601 26 6 2.3248 -3.6471 0.0024 27 6 1.5997 -2.4910 0.0015 28 6 2.2592 -1.2564 0.0005 29 1 -0.3634 -0.0001 1.0277 30 1 -0.3633 0.8899 -0.5139 31 1 -0.3633 -0.8901 -0.5139 32 1 1.6809 2.1102 -0.0004 33 1 5.4666 -2.3703 0.0122 34 1 3.0487 -6.0236 -0.8840 35 1 3.0479 -6.0212 0.8959 36 1 3.1804 -8.5627 0.0078 37 1 6.1636 -10.7188 -1.4246 38 1 4.5957 -10.1181 -2.0159 39 1 5.9750 -9.0038 -1.8608 40 1 6.7632 -12.8876 0.3756 41 1 1.8159 -4.5996 0.0032 42 1 0.5203 -2.5287 0.0007 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000751396268.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:17:41 Heat of formation + Delta-G solvation = -104.332431 kcal Electronic energy + Delta-G solvation = -26672.394028 eV Core-core repulsion = 22583.746307 eV Total energy + Delta-G solvation = -4088.647722 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -42.21508 -40.44710 -38.99381 -38.14972 -37.19783 -35.49355 -34.87382 -32.56264 -31.51022 -30.12893 -29.47024 -29.22628 -27.55913 -25.34722 -24.46875 -23.76464 -22.39929 -21.45058 -19.92730 -19.67417 -18.67636 -17.93515 -17.61707 -17.06723 -16.93743 -16.40839 -15.94494 -15.44057 -15.39685 -15.16324 -14.49808 -14.46300 -14.26677 -14.15982 -14.06497 -13.92930 -13.44206 -13.24485 -13.03795 -12.78163 -12.51315 -12.32291 -12.12020 -11.82227 -11.55770 -11.47553 -11.16960 -11.04684 -10.84112 -10.59503 -10.39971 -10.32486 -10.17460 -9.25211 -9.23227 -9.16064 -8.65124 -8.41442 -8.10532 -6.21019 -4.31285 -0.11578 0.64029 1.18432 1.92020 2.49594 2.74566 3.08199 3.18767 3.25813 3.26986 3.29375 3.75642 3.83477 3.92099 4.05283 4.26417 4.30272 4.43248 4.67888 4.73805 4.82438 4.88637 4.94900 4.98400 5.11498 5.15436 5.22257 5.27680 5.35649 5.46973 5.66432 5.73540 5.80928 5.91742 6.71287 6.84487 6.87587 6.91074 7.03340 7.20137 7.27988 7.42365 7.57960 7.79503 8.04382 8.45337 8.65035 8.90368 9.36152 10.84914 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.029417 B = 0.001941 C = 0.001855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.609116 B =14418.977426 C =15091.061351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.046 3.954 3 C -0.274 4.274 4 C 0.513 3.487 5 O -0.471 6.471 6 O -0.270 6.270 7 C 0.192 3.808 8 C -0.176 4.176 9 C 0.198 3.802 10 O -0.274 6.274 11 C 0.035 3.965 12 C 0.502 3.498 13 O -0.529 6.529 14 N -0.703 5.703 15 C 0.266 3.734 16 H 0.051 0.949 17 C -0.148 4.148 18 C -0.537 4.537 19 H 0.062 0.938 20 C 0.066 3.934 21 N -0.881 5.881 22 Si 0.904 3.096 23 H -0.279 1.279 24 H -0.274 1.274 25 H -0.285 1.285 26 C -0.229 4.229 27 C -0.012 4.012 28 C -0.202 4.202 29 H 0.091 0.909 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.160 0.840 33 H 0.155 0.845 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.390 0.610 37 H 0.092 0.908 38 H 0.028 0.972 39 H 0.016 0.984 40 H 0.266 0.734 41 H 0.144 0.856 42 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.268 19.668 -1.311 25.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.045 3.955 3 C -0.294 4.294 4 C 0.363 3.637 5 O -0.359 6.359 6 O -0.182 6.182 7 C 0.147 3.853 8 C -0.195 4.195 9 C 0.150 3.850 10 O -0.184 6.184 11 C -0.044 4.044 12 C 0.284 3.716 13 O -0.406 6.406 14 N -0.353 5.353 15 C 0.165 3.835 16 H 0.068 0.932 17 C -0.207 4.207 18 C -0.575 4.575 19 H 0.080 0.920 20 C -0.137 4.137 21 N -0.519 5.519 22 Si 0.731 3.269 23 H -0.205 1.205 24 H -0.198 1.198 25 H -0.210 1.210 26 C -0.247 4.247 27 C -0.030 4.030 28 C -0.203 4.203 29 H 0.109 0.891 30 H 0.102 0.898 31 H 0.100 0.900 32 H 0.178 0.822 33 H 0.173 0.827 34 H 0.111 0.889 35 H 0.112 0.888 36 H 0.223 0.777 37 H 0.110 0.890 38 H 0.047 0.953 39 H 0.035 0.965 40 H 0.076 0.924 41 H 0.162 0.838 42 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -14.498 20.109 -1.332 24.826 hybrid contribution -1.230 -0.963 0.374 1.606 sum -15.729 19.146 -0.958 24.796 Atomic orbital electron populations 1.21024 0.89096 1.04410 1.03964 1.21491 0.96792 0.90961 0.86249 1.22291 0.92832 1.00304 1.13931 1.19171 0.88202 0.81080 0.75277 1.90982 1.72116 1.25643 1.47169 1.83554 1.43450 1.13662 1.77495 1.18490 0.89286 0.83076 0.94492 1.19498 1.01868 0.86613 1.11523 1.18869 0.89881 0.86148 0.90137 1.86213 1.34408 1.11505 1.86269 1.22844 0.94974 0.82785 1.03750 1.19776 0.88992 0.84001 0.78794 1.90735 1.15522 1.85090 1.49223 1.46438 1.11079 1.05332 1.72409 1.18819 0.89314 0.81133 0.94232 0.93157 1.22095 1.00446 1.00982 0.97189 1.21171 0.99853 0.94685 1.41799 0.91970 1.24903 0.94891 0.98848 0.95098 1.69899 1.10007 1.26458 1.45487 0.86415 0.79498 0.81678 0.79295 1.20512 1.19843 1.21025 1.21147 0.92653 1.00447 1.10487 1.20672 1.00204 0.89706 0.92461 1.18883 0.91585 0.94488 1.15303 0.89054 0.89821 0.89987 0.82204 0.82692 0.88858 0.88782 0.77730 0.88964 0.95329 0.96531 0.92432 0.83810 0.83900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.39 9.64 36.01 0.35 -0.04 16 2 C 0.05 0.31 6.08 -102.18 -0.62 -0.31 16 3 C -0.27 -2.34 9.62 -39.39 -0.38 -2.72 16 4 C 0.51 6.34 7.89 31.78 0.25 6.59 16 5 O -0.47 -7.26 17.91 -19.60 -0.35 -7.61 16 6 O -0.27 -3.44 9.82 -20.78 -0.20 -3.64 16 7 C 0.19 2.11 6.76 -38.48 -0.26 1.85 16 8 C -0.18 -2.01 9.94 -39.32 -0.39 -2.40 16 9 C 0.20 2.19 6.69 -39.06 -0.26 1.92 16 10 O -0.27 -3.81 9.65 -38.86 -0.38 -4.18 16 11 C 0.04 0.42 5.21 36.01 0.19 0.61 16 12 C 0.50 9.14 7.87 -10.98 -0.09 9.06 16 13 O -0.53 -12.36 16.16 -14.36 -0.23 -12.59 16 14 N -0.70 -13.16 5.07 -54.93 -0.28 -13.44 16 15 C 0.27 6.41 2.56 -69.09 -0.18 6.24 16 16 H 0.05 1.42 7.58 -51.92 -0.39 1.03 16 17 C -0.15 -3.53 9.26 37.16 0.34 -3.19 16 18 C -0.54 -13.48 8.73 -34.44 -0.30 -13.78 16 19 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 20 C 0.07 1.72 5.30 -17.82 -0.09 1.62 16 21 N -0.88 -24.07 11.32 55.43 0.63 -23.44 16 22 Si 0.90 19.82 29.54 -169.99 -5.02 14.80 16 23 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 24 H -0.27 -5.83 7.11 56.52 0.40 -5.42 16 25 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 26 C -0.23 -1.80 8.96 -39.80 -0.36 -2.16 16 27 C -0.01 -0.08 9.36 -39.57 -0.37 -0.45 16 28 C -0.20 -1.72 5.87 -105.01 -0.62 -2.33 16 29 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.08 0.17 8.10 -51.93 -0.42 -0.25 16 31 H 0.08 0.15 6.62 -51.92 -0.34 -0.19 16 32 H 0.16 1.03 8.06 -52.48 -0.42 0.61 16 33 H 0.16 1.77 8.06 -52.48 -0.42 1.35 16 34 H 0.09 0.82 7.64 -51.93 -0.40 0.42 16 35 H 0.09 0.84 7.64 -51.93 -0.40 0.45 16 36 H 0.39 5.89 8.54 -40.82 -0.35 5.54 16 37 H 0.09 2.41 6.07 -51.93 -0.32 2.09 16 38 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 41 H 0.14 0.79 6.24 -52.49 -0.33 0.47 16 42 H 0.14 0.46 6.53 -52.48 -0.34 0.11 16 LS Contribution 362.07 15.07 5.46 5.46 Total: -1.00 -33.90 362.07 -8.10 -42.00 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -4.94 Total: 2.14 kcal Atomic # 6 Polarization: 3.30 SS G_CDS: -2.78 Total: 0.51 kcal Atomic # 7 Polarization: -37.23 SS G_CDS: 0.35 Total: -36.88 kcal Atomic # 8 Polarization: -26.86 SS G_CDS: -1.16 Total: -28.03 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.02 Total: 14.80 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.90 -8.10 -42.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751396268.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.334 kcal (2) G-P(sol) polarization free energy of solvation -33.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds