Wall clock time and date at job start Tue Mar 31 2020 16:17:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35848 * 120.90088 * 2 1 4 4 C 1.41002 * 119.82357 * 179.97438 * 3 2 1 5 5 O 1.21797 * 119.15282 * 179.97438 * 4 3 2 6 6 O 1.34220 * 121.68708 * 0.02562 * 4 3 2 7 7 C 1.35020 * 121.46709 * 359.97438 * 6 4 3 8 8 C 1.38678 * 120.73978 * 180.32427 * 7 6 4 9 9 C 1.38516 * 119.79136 * 180.20482 * 8 7 6 10 10 O 1.35746 * 119.72899 * 179.76909 * 9 8 7 11 11 C 1.42905 * 116.99351 * 179.72295 * 10 9 8 12 12 C 1.50709 * 109.46650 * 179.97438 * 11 10 9 13 13 O 1.21283 * 119.99688 * 0.02562 * 12 11 10 14 14 N 1.34779 * 119.99796 * 180.02562 * 12 11 10 15 15 C 1.46497 * 119.99943 * 180.02562 * 14 12 11 16 16 H 1.09007 * 109.47078 * 34.99474 * 15 14 12 17 17 C 1.53000 * 109.47021 * 275.00054 * 15 14 12 18 18 C 1.50694 * 109.47115 * 154.99835 * 15 14 12 19 19 H 1.08000 * 120.00563 * 359.97438 * 18 15 14 20 20 C 1.37885 * 119.99902 * 180.02562 * 18 15 14 21 21 N 1.31516 * 119.99913 * 359.97438 * 20 18 15 22 22 Si 1.86798 * 119.99766 * 179.97438 * 20 18 15 23 23 H 1.48500 * 109.47353 * 269.99586 * 22 20 18 24 24 H 1.48501 * 109.47293 * 30.00037 * 22 20 18 25 25 H 1.48504 * 109.46680 * 149.99835 * 22 20 18 26 26 C 1.39374 * 120.53973 * 359.48904 * 9 8 7 27 27 C 1.36466 * 120.42871 * 0.23406 * 26 9 8 28 28 C 1.39971 * 119.79324 * 0.02562 * 27 26 9 29 29 H 1.09002 * 109.47326 * 269.99672 * 1 2 3 30 30 H 1.08998 * 109.47247 * 30.00711 * 1 2 3 31 31 H 1.09008 * 109.46605 * 150.00098 * 1 2 3 32 32 H 1.08003 * 120.08874 * 359.97438 * 3 2 1 33 33 H 1.08009 * 120.10682 * 359.97353 * 8 7 6 34 34 H 1.08998 * 109.46927 * 60.00409 * 11 10 9 35 35 H 1.08995 * 109.47572 * 299.99969 * 11 10 9 36 36 H 0.96997 * 119.99849 * 0.02562 * 14 12 11 37 37 H 1.08995 * 109.47131 * 179.97438 * 17 15 14 38 38 H 1.09002 * 109.47106 * 299.99878 * 17 15 14 39 39 H 1.08998 * 109.47089 * 59.99825 * 17 15 14 40 40 H 0.97001 * 119.99646 * 179.97438 * 21 20 18 41 41 H 1.07995 * 119.78466 * 180.25646 * 26 9 8 42 42 H 1.08004 * 120.10167 * 179.97438 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2046 1.1657 0.0000 4 6 3.6144 1.1391 0.0005 5 8 4.2276 2.1915 0.0001 6 8 4.2978 -0.0160 0.0006 7 6 3.6656 -1.2090 0.0006 8 6 4.3868 -2.3935 0.0073 9 6 3.7180 -3.6065 0.0029 10 8 4.4252 -4.7651 0.0048 11 6 3.6763 -5.9822 0.0062 12 6 4.6232 -7.1547 0.0075 13 8 5.8214 -6.9664 0.0078 14 7 4.1386 -8.4123 0.0084 15 6 5.0591 -9.5520 0.0103 16 1 5.9419 -9.3051 0.6002 17 6 5.4784 -9.8712 -1.4260 18 6 4.3725 -10.7512 0.6115 19 1 3.3526 -10.6723 0.9579 20 6 5.0467 -11.9490 0.7202 21 7 6.2888 -12.0451 0.2988 22 14 4.1958 -13.4353 1.4660 23 1 4.4297 -13.4556 2.9324 24 1 2.7372 -13.3567 1.1984 25 1 4.7441 -14.6753 0.8601 26 6 2.3248 -3.6471 0.0024 27 6 1.5997 -2.4910 0.0015 28 6 2.2592 -1.2564 0.0005 29 1 -0.3634 -0.0001 1.0277 30 1 -0.3633 0.8899 -0.5139 31 1 -0.3633 -0.8901 -0.5139 32 1 1.6809 2.1102 -0.0004 33 1 5.4666 -2.3703 0.0122 34 1 3.0487 -6.0236 -0.8840 35 1 3.0479 -6.0212 0.8959 36 1 3.1804 -8.5627 0.0078 37 1 6.1636 -10.7188 -1.4246 38 1 4.5957 -10.1181 -2.0159 39 1 5.9750 -9.0038 -1.8608 40 1 6.7632 -12.8876 0.3756 41 1 1.8159 -4.5996 0.0032 42 1 0.5203 -2.5287 0.0007 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000751396268.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:17:31 Heat of formation + Delta-G solvation = -126.120965 kcal Electronic energy + Delta-G solvation = -26673.338850 eV Core-core repulsion = 22583.746307 eV Total energy + Delta-G solvation = -4089.592544 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 3.31 seconds Orbital eigenvalues (eV) -43.03316 -41.41776 -40.29879 -39.19998 -38.00800 -36.73125 -36.09589 -34.37530 -32.28955 -31.48269 -30.45107 -29.72722 -28.72411 -27.32499 -25.33057 -24.44606 -23.37106 -22.80200 -21.33584 -20.71821 -19.42934 -19.13491 -18.60572 -18.09283 -17.97552 -17.41092 -17.39379 -17.01475 -16.50993 -16.08643 -15.82701 -15.51340 -15.13399 -14.97094 -14.75281 -14.56837 -14.52768 -14.35310 -14.30564 -13.78551 -13.68130 -13.38117 -13.14769 -12.96913 -12.85897 -12.75114 -12.58208 -12.31624 -12.26287 -12.17728 -12.10199 -11.44607 -11.11257 -10.80424 -10.79998 -10.58234 -9.97622 -9.81864 -9.16650 -8.16670 -6.34439 -0.79496 -0.08982 0.47035 1.06871 1.47709 1.47982 1.58564 1.68382 1.73008 1.76111 2.41368 2.59137 2.81432 3.11915 3.14614 3.27702 3.37511 3.58810 3.82234 3.88454 4.08392 4.12772 4.15938 4.26166 4.39789 4.56461 4.69699 4.75407 4.81799 4.85039 4.92103 4.94818 5.06482 5.09160 5.22344 5.27675 5.37270 5.42362 5.58773 5.67484 5.88057 6.04955 6.09272 6.13420 6.35186 6.73417 6.89763 7.32627 7.50936 8.89658 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.029417 B = 0.001941 C = 0.001855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.609116 B =14418.977426 C =15091.061351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.075 3.925 3 C -0.295 4.295 4 C 0.503 3.497 5 O -0.523 6.523 6 O -0.296 6.296 7 C 0.168 3.832 8 C -0.201 4.201 9 C 0.185 3.815 10 O -0.312 6.312 11 C 0.047 3.953 12 C 0.494 3.506 13 O -0.593 6.593 14 N -0.695 5.695 15 C 0.271 3.729 16 H -0.004 1.004 17 C -0.136 4.136 18 C -0.543 4.543 19 H 0.081 0.919 20 C 0.010 3.990 21 N -0.919 5.919 22 Si 0.974 3.026 23 H -0.280 1.280 24 H -0.255 1.255 25 H -0.288 1.288 26 C -0.218 4.218 27 C 0.008 3.992 28 C -0.204 4.204 29 H 0.112 0.888 30 H 0.097 0.903 31 H 0.106 0.894 32 H 0.179 0.821 33 H 0.133 0.867 34 H 0.139 0.861 35 H 0.137 0.863 36 H 0.413 0.587 37 H 0.065 0.935 38 H 0.046 0.954 39 H 0.010 0.990 40 H 0.264 0.736 41 H 0.181 0.819 42 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.356 19.051 -1.105 29.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.074 3.926 3 C -0.314 4.314 4 C 0.357 3.643 5 O -0.416 6.416 6 O -0.209 6.209 7 C 0.123 3.877 8 C -0.221 4.221 9 C 0.138 3.862 10 O -0.224 6.224 11 C -0.030 4.030 12 C 0.280 3.720 13 O -0.474 6.474 14 N -0.346 5.346 15 C 0.167 3.833 16 H 0.014 0.986 17 C -0.195 4.195 18 C -0.581 4.581 19 H 0.099 0.901 20 C -0.189 4.189 21 N -0.558 5.558 22 Si 0.799 3.201 23 H -0.206 1.206 24 H -0.178 1.178 25 H -0.214 1.214 26 C -0.236 4.236 27 C -0.009 4.009 28 C -0.205 4.205 29 H 0.130 0.870 30 H 0.116 0.884 31 H 0.124 0.876 32 H 0.197 0.803 33 H 0.151 0.849 34 H 0.156 0.844 35 H 0.154 0.846 36 H 0.249 0.751 37 H 0.083 0.917 38 H 0.065 0.935 39 H 0.029 0.971 40 H 0.074 0.926 41 H 0.199 0.801 42 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -20.665 19.495 -1.129 28.432 hybrid contribution 0.679 -0.787 0.309 1.084 sum -19.986 18.708 -0.820 27.388 Atomic orbital electron populations 1.21247 0.85208 1.06360 1.05665 1.21930 0.98961 0.89188 0.82532 1.22319 0.90525 1.02216 1.16367 1.19855 0.89698 0.80290 0.74494 1.90932 1.73262 1.27126 1.50307 1.83458 1.45131 1.14631 1.77635 1.18741 0.90852 0.82018 0.96061 1.19497 1.01323 0.87867 1.13390 1.18984 0.91378 0.84561 0.91250 1.86143 1.36403 1.12707 1.87172 1.22836 0.92838 0.79515 1.07811 1.20887 0.89220 0.85261 0.76599 1.90713 1.18850 1.86084 1.51704 1.46065 1.11485 1.04628 1.72391 1.18366 0.88682 0.82936 0.93299 0.98646 1.21917 1.00471 0.99585 0.97499 1.21548 1.00566 0.94753 1.41265 0.90073 1.25853 0.95430 1.02085 0.95576 1.70068 1.11713 1.27066 1.46934 0.85312 0.79228 0.77610 0.77971 1.20582 1.17836 1.21417 1.21540 0.90723 1.02653 1.08691 1.21231 1.02415 0.87840 0.89398 1.19267 0.90345 0.96528 1.14390 0.86996 0.88445 0.87557 0.80319 0.84922 0.84389 0.84566 0.75091 0.91672 0.93468 0.97097 0.92641 0.80148 0.78811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.01 9.64 71.24 0.69 0.68 16 2 C 0.07 0.77 6.08 -18.28 -0.11 0.65 16 3 C -0.30 -4.76 9.62 22.39 0.22 -4.55 16 4 C 0.50 13.31 7.89 68.50 0.54 13.85 16 5 O -0.52 -17.68 17.91 18.96 0.34 -17.34 16 6 O -0.30 -8.26 9.82 14.75 0.14 -8.12 16 7 C 0.17 3.77 6.76 22.98 0.16 3.92 16 8 C -0.20 -4.85 9.94 22.44 0.22 -4.63 16 9 C 0.19 3.81 6.69 22.61 0.15 3.96 16 10 O -0.31 -8.40 9.65 -71.67 -0.69 -9.10 16 11 C 0.05 0.97 5.21 71.24 0.37 1.34 16 12 C 0.49 17.67 7.87 87.66 0.69 18.36 16 13 O -0.59 -28.90 16.16 16.00 0.26 -28.64 16 14 N -0.69 -25.12 5.07 -446.09 -2.26 -27.38 16 15 C 0.27 13.26 2.56 44.24 0.11 13.37 16 16 H 0.00 -0.26 7.58 -2.38 -0.02 -0.28 16 17 C -0.14 -6.60 9.26 71.98 0.67 -5.93 16 18 C -0.54 -26.89 8.73 25.60 0.22 -26.66 16 19 H 0.08 3.62 7.74 -2.91 -0.02 3.60 16 20 C 0.01 0.54 5.30 84.66 0.45 0.99 16 21 N -0.92 -51.55 11.32 21.45 0.24 -51.31 16 22 Si 0.97 40.02 29.54 68.60 2.03 42.04 16 23 H -0.28 -11.45 7.11 99.48 0.71 -10.75 16 24 H -0.25 -9.61 7.11 99.48 0.71 -8.91 16 25 H -0.29 -11.92 7.11 99.48 0.71 -11.21 16 26 C -0.22 -2.31 8.96 22.13 0.20 -2.11 16 27 C 0.01 0.06 9.36 22.28 0.21 0.27 16 28 C -0.20 -2.87 5.87 -20.12 -0.12 -2.99 16 29 H 0.11 -0.28 8.14 -2.39 -0.02 -0.29 16 30 H 0.10 -0.14 8.10 -2.39 -0.02 -0.16 16 31 H 0.11 -0.43 6.62 -2.38 -0.02 -0.44 16 32 H 0.18 2.07 8.06 -2.91 -0.02 2.04 16 33 H 0.13 3.57 8.06 -2.91 -0.02 3.55 16 34 H 0.14 1.64 7.64 -2.39 -0.02 1.62 16 35 H 0.14 1.69 7.64 -2.39 -0.02 1.67 16 36 H 0.41 11.09 8.54 -92.71 -0.79 10.29 16 37 H 0.06 3.52 6.07 -2.39 -0.01 3.51 16 38 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 39 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 40 H 0.26 14.10 8.31 -92.71 -0.77 13.33 16 41 H 0.18 0.59 6.24 -2.91 -0.02 0.57 16 42 H 0.19 -0.48 6.53 -2.91 -0.02 -0.50 16 Total: -1.00 -84.18 362.07 5.01 -79.17 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: 0.29 Total: 10.14 kcal Atomic # 6 Polarization: 5.86 SS G_CDS: 4.66 Total: 10.52 kcal Atomic # 7 Polarization: -76.67 SS G_CDS: -2.02 Total: -78.69 kcal Atomic # 8 Polarization: -63.25 SS G_CDS: 0.05 Total: -63.19 kcal Atomic # 14 Polarization: 40.02 SS G_CDS: 2.03 Total: 42.04 kcal Total: -84.18 5.01 -79.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751396268.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.950 kcal (2) G-P(sol) polarization free energy of solvation -84.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.31 seconds