Wall clock time and date at job start Tue Mar 31 2020 16:23:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42899 * 109.46946 * 2 1 4 4 C 1.50700 * 109.47038 * 119.99945 * 2 1 3 5 5 O 1.21280 * 120.00286 * 94.90726 * 4 2 1 6 6 N 1.34779 * 119.99956 * 274.90959 * 4 2 1 7 7 C 1.46494 * 120.00091 * 180.02562 * 6 4 2 8 8 C 1.52998 * 109.47517 * 179.97438 * 7 6 4 9 9 C 1.50700 * 109.47382 * 179.97438 * 8 7 6 10 10 H 1.07997 * 119.99940 * 0.02562 * 9 8 7 11 11 C 1.37880 * 119.99999 * 179.97438 * 9 8 7 12 12 N 1.31515 * 119.99718 * 0.02562 * 11 9 8 13 13 Si 1.86794 * 120.00129 * 180.02562 * 11 9 8 14 14 H 1.48493 * 109.47117 * 60.00075 * 13 11 9 15 15 H 1.48503 * 109.47152 * 180.02562 * 13 11 9 16 16 H 1.48502 * 109.47031 * 300.00060 * 13 11 9 17 17 C 1.50693 * 109.46960 * 239.99682 * 2 1 3 18 18 C 1.38258 * 120.00304 * 307.75681 * 17 2 1 19 19 C 1.38218 * 120.00069 * 180.02562 * 18 17 2 20 20 C 1.38252 * 120.00072 * 0.02562 * 19 18 17 21 21 C 1.38214 * 119.99832 * 359.95137 * 20 19 18 22 22 C 1.50703 * 119.99855 * 180.02562 * 21 20 19 23 23 F 1.39899 * 109.47085 * 359.97438 * 22 21 20 24 24 F 1.39896 * 109.47379 * 120.00040 * 22 21 20 25 25 F 1.39904 * 109.46917 * 239.99798 * 22 21 20 26 26 C 1.38216 * 119.99840 * 127.96779 * 17 2 1 27 27 H 1.08996 * 109.47135 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47085 * 300.00202 * 1 2 3 29 29 H 1.08997 * 109.46977 * 59.99908 * 1 2 3 30 30 H 0.96702 * 113.99632 * 180.02562 * 3 2 1 31 31 H 0.97005 * 120.00162 * 0.02562 * 6 4 2 32 32 H 1.09004 * 109.47200 * 300.00289 * 7 6 4 33 33 H 1.09007 * 109.47021 * 60.00040 * 7 6 4 34 34 H 1.09004 * 109.47204 * 300.00387 * 8 7 6 35 35 H 1.09007 * 109.46861 * 60.00042 * 8 7 6 36 36 H 0.97011 * 119.99816 * 179.97438 * 12 11 9 37 37 H 1.08004 * 119.99535 * 0.02562 * 18 17 2 38 38 H 1.07993 * 119.99776 * 179.97438 * 19 18 17 39 39 H 1.08001 * 120.00043 * 179.97438 * 20 19 18 40 40 H 1.07996 * 120.00227 * 0.02562 * 26 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 2.3192 -1.8876 1.1765 6 7 2.1628 -0.0376 2.3910 7 6 2.6516 -0.7280 3.5870 8 6 2.7057 0.2558 4.7576 9 6 3.2080 -0.4547 5.9881 10 1 3.4635 -1.5029 5.9399 11 6 3.3423 0.2339 7.1751 12 7 3.0317 1.5105 7.2335 13 14 3.9656 -0.6465 8.7001 14 1 5.3257 -1.1831 8.4408 15 1 4.0179 0.3084 9.8362 16 1 3.0479 -1.7647 9.0359 17 6 2.0323 -0.7104 -1.2304 18 6 1.5715 -1.9783 -1.5331 19 6 2.0327 -2.6301 -2.6614 20 6 2.9551 -2.0145 -3.4869 21 6 3.4153 -0.7468 -3.1845 22 6 4.4204 -0.0755 -4.0847 23 9 4.7324 -0.9257 -5.1510 24 9 3.8799 1.1159 -4.5804 25 9 5.5822 0.2063 -3.3580 26 6 2.9570 -0.0963 -2.0539 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 2.9703 1.4236 -0.0004 31 1 1.9330 0.9039 2.4343 32 1 1.9786 -1.5494 3.8330 33 1 3.6504 -1.1212 3.3969 34 1 3.3790 1.0769 4.5113 35 1 1.7072 0.6493 4.9478 36 1 3.1258 1.9948 8.0687 37 1 0.8513 -2.4594 -0.8879 38 1 1.6730 -3.6207 -2.8976 39 1 3.3157 -2.5240 -4.3683 40 1 3.3198 0.8925 -1.8154 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000752843563.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:23:02 Heat of formation + Delta-G solvation = -221.319391 kcal Electronic energy + Delta-G solvation = -28176.240002 eV Core-core repulsion = 23540.662605 eV Total energy + Delta-G solvation = -4635.577397 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.118 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.40528 -47.93642 -47.84997 -40.83474 -38.97726 -36.98038 -35.05287 -33.05076 -32.83763 -31.72220 -30.31061 -29.41264 -26.26364 -25.41909 -24.30273 -22.62793 -22.10365 -20.96504 -20.10743 -18.92078 -18.72112 -18.61779 -18.07562 -16.60419 -16.48127 -16.01652 -15.78934 -15.29887 -15.05820 -14.77472 -14.62663 -14.56610 -14.40004 -14.30700 -14.02530 -14.02104 -13.89172 -13.72487 -13.19585 -13.09862 -12.85456 -12.65145 -12.38434 -12.32635 -12.26276 -11.89548 -11.50483 -11.27567 -11.08437 -11.01142 -10.70248 -10.39137 -9.84124 -9.53743 -9.46499 -9.35650 -9.05333 -8.64507 -8.42680 -6.13000 -4.16514 0.65673 0.88320 2.39154 2.67965 3.06570 3.28375 3.32603 3.34923 3.41644 3.52513 3.75722 3.82246 4.17097 4.20395 4.37890 4.49669 4.67583 4.77986 4.85049 4.93181 5.10529 5.23925 5.30847 5.43954 5.49224 5.52369 5.77948 5.85061 6.00848 6.10170 6.22115 6.24670 6.41843 6.63901 6.76817 7.11486 7.45805 7.55431 7.83427 7.87291 8.21174 8.44335 8.89024 9.48572 10.98408 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.018816 B = 0.002464 C = 0.002391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.733739 B =11358.680030 C =11708.224406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.160 3.840 3 O -0.541 6.541 4 C 0.482 3.518 5 O -0.538 6.538 6 N -0.708 5.708 7 C 0.120 3.880 8 C 0.013 3.987 9 C -0.524 4.524 10 H 0.059 0.941 11 C 0.060 3.940 12 N -0.893 5.893 13 Si 0.897 3.103 14 H -0.275 1.275 15 H -0.286 1.286 16 H -0.276 1.276 17 C -0.102 4.102 18 C -0.045 4.045 19 C -0.122 4.122 20 C -0.071 4.071 21 C -0.187 4.187 22 C 0.510 3.490 23 F -0.179 7.179 24 F -0.177 7.177 25 F -0.176 7.176 26 C -0.059 4.059 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.383 0.617 31 H 0.404 0.596 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.023 0.977 35 H 0.023 0.977 36 H 0.263 0.737 37 H 0.137 0.863 38 H 0.137 0.863 39 H 0.138 0.862 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.151 -2.877 -24.160 24.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.116 3.884 3 O -0.348 6.348 4 C 0.265 3.735 5 O -0.416 6.416 6 N -0.358 5.358 7 C -0.002 4.002 8 C -0.024 4.024 9 C -0.563 4.563 10 H 0.077 0.923 11 C -0.142 4.142 12 N -0.532 5.532 13 Si 0.725 3.275 14 H -0.201 1.201 15 H -0.212 1.212 16 H -0.201 1.201 17 C -0.103 4.103 18 C -0.063 4.063 19 C -0.140 4.140 20 C -0.089 4.089 21 C -0.189 4.189 22 C 0.456 3.544 23 F -0.160 7.160 24 F -0.158 7.158 25 F -0.157 7.157 26 C -0.077 4.077 27 H 0.098 0.902 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.233 0.767 31 H 0.239 0.761 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.041 0.959 35 H 0.041 0.959 36 H 0.073 0.927 37 H 0.154 0.846 38 H 0.155 0.845 39 H 0.155 0.845 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -3.545 -3.408 -24.056 24.554 hybrid contribution 1.114 0.062 0.807 1.377 sum -2.431 -3.346 -23.249 23.614 Atomic orbital electron populations 1.21785 0.89407 1.03568 1.04435 1.20235 0.96828 0.81758 0.89619 1.86606 1.27613 1.23938 1.96650 1.20974 0.79246 0.87928 0.85344 1.90702 1.50001 1.15737 1.85141 1.46334 1.64890 1.14614 1.09955 1.21798 0.98131 0.96754 0.83521 1.19317 0.97954 0.94186 0.90948 1.20995 1.44665 0.96556 0.94090 0.92325 1.24994 0.95256 0.94878 0.99086 1.69947 1.48092 1.08115 1.27010 0.86567 0.79516 0.79359 0.82065 1.20094 1.21198 1.20106 1.20004 0.98061 0.95781 0.96425 1.21241 0.97292 0.92805 0.94950 1.21160 0.97618 1.00509 0.94716 1.21030 0.95475 0.92795 0.99572 1.19829 1.02492 0.97838 0.98711 1.18281 0.80539 0.76670 0.78939 1.93157 1.93616 1.70697 1.58525 1.93222 1.85786 1.48257 1.88532 1.93235 1.51295 1.93808 1.77366 1.20598 0.94885 0.99738 0.92444 0.90198 0.90365 0.90387 0.76732 0.76107 0.92394 0.92457 0.95879 0.95876 0.92722 0.84568 0.84527 0.84462 0.84598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.34 8.55 37.16 0.32 -1.03 16 2 C 0.16 1.88 1.16 -92.92 -0.11 1.77 16 3 O -0.54 -5.81 11.52 -35.23 -0.41 -6.22 16 4 C 0.48 7.46 6.68 -10.98 -0.07 7.38 16 5 O -0.54 -9.96 15.22 5.56 0.08 -9.87 16 6 N -0.71 -11.66 5.47 -60.29 -0.33 -11.99 16 7 C 0.12 2.45 5.61 -4.05 -0.02 2.42 16 8 C 0.01 0.32 5.09 -27.88 -0.14 0.18 16 9 C -0.52 -14.30 9.11 -34.44 -0.31 -14.61 16 10 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 11 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 12 N -0.89 -25.80 13.29 55.43 0.74 -25.06 16 13 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 16 14 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 15 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 16 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 17 C -0.10 -1.15 4.56 -104.63 -0.48 -1.63 16 18 C -0.04 -0.48 8.01 -39.58 -0.32 -0.79 16 19 C -0.12 -1.09 10.05 -39.58 -0.40 -1.49 16 20 C -0.07 -0.65 9.43 -39.59 -0.37 -1.02 16 21 C -0.19 -1.93 5.37 -104.62 -0.56 -2.49 16 22 C 0.51 5.22 3.32 36.01 0.12 5.34 16 23 F -0.18 -1.76 15.97 2.25 0.04 -1.73 16 24 F -0.18 -1.86 17.24 2.25 0.04 -1.82 16 25 F -0.18 -1.96 17.23 2.25 0.04 -1.92 16 26 C -0.06 -0.62 8.80 -39.58 -0.35 -0.97 16 27 H 0.08 0.73 7.00 -51.93 -0.36 0.36 16 28 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.38 3.28 7.73 45.56 0.35 3.63 16 31 H 0.40 6.04 7.91 -40.82 -0.32 5.72 16 32 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 37 H 0.14 1.38 6.97 -52.48 -0.37 1.01 16 38 H 0.14 0.87 8.06 -52.49 -0.42 0.44 16 39 H 0.14 0.98 7.16 -52.49 -0.38 0.61 16 40 H 0.14 1.24 6.43 -52.49 -0.34 0.91 16 LS Contribution 354.12 15.07 5.34 5.34 Total: -1.00 -31.36 354.12 -6.19 -37.55 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -3.91 Total: 5.01 kcal Atomic # 6 Polarization: -2.59 SS G_CDS: -2.79 Total: -5.38 kcal Atomic # 7 Polarization: -37.46 SS G_CDS: 0.41 Total: -37.05 kcal Atomic # 8 Polarization: -15.77 SS G_CDS: -0.32 Total: -16.09 kcal Atomic # 9 Polarization: -5.58 SS G_CDS: 0.11 Total: -5.47 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.36 -6.19 -37.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000752843563.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -183.770 kcal (2) G-P(sol) polarization free energy of solvation -31.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -215.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -221.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds