Wall clock time and date at job start Tue Mar 31 2020 17:53:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 109.47075 * 2 1 4 4 C 1.50701 * 109.47253 * 240.00372 * 2 1 3 5 5 H 1.08001 * 119.99981 * 274.99457 * 4 2 1 6 6 C 1.37878 * 119.99998 * 94.99105 * 4 2 1 7 7 N 1.31516 * 119.99830 * 184.91572 * 6 4 2 8 8 Si 1.86801 * 120.00088 * 4.91885 * 6 4 2 9 9 H 1.48509 * 109.46815 * 84.83096 * 8 6 4 10 10 H 1.48501 * 109.46957 * 204.82890 * 8 6 4 11 11 H 1.48497 * 109.47116 * 324.83506 * 8 6 4 12 12 O 1.45199 * 109.47388 * 119.99887 * 2 1 3 13 13 C 1.34224 * 117.00433 * 270.00143 * 12 2 1 14 14 O 1.20832 * 119.99586 * 0.02562 * 13 12 2 15 15 C 1.50697 * 120.00467 * 179.97438 * 13 12 2 16 16 C 1.53002 * 109.47525 * 179.97438 * 15 13 12 17 17 C 1.52994 * 109.47277 * 180.02562 * 16 15 13 18 18 N 1.46501 * 109.47161 * 180.02562 * 17 16 15 19 19 C 1.34523 * 124.45548 * 269.97216 * 18 17 16 20 20 O 1.21450 * 125.71179 * 0.04541 * 19 18 17 21 21 C 1.47815 * 108.57802 * 180.02562 * 19 18 17 22 22 C 1.38567 * 134.29185 * 180.02562 * 21 19 18 23 23 C 1.38620 * 119.71564 * 180.21364 * 22 21 19 24 24 C 1.38223 * 120.45476 * 359.52147 * 23 22 21 25 25 C 1.38610 * 120.46454 * 0.46722 * 24 23 22 26 26 C 1.38563 * 119.72064 * 359.77795 * 25 24 23 27 27 C 1.34518 * 124.46442 * 90.00091 * 18 17 16 28 28 O 1.21445 * 125.70839 * 0.02562 * 27 18 17 29 29 H 1.09002 * 109.47109 * 295.02757 * 1 2 3 30 30 H 1.08992 * 109.47433 * 55.02973 * 1 2 3 31 31 H 1.08997 * 109.46911 * 175.03720 * 1 2 3 32 32 H 0.96997 * 119.99919 * 180.02562 * 7 6 4 33 33 H 1.09003 * 109.47263 * 60.00083 * 15 13 12 34 34 H 1.08998 * 109.46945 * 300.00600 * 15 13 12 35 35 H 1.09003 * 109.46677 * 59.99853 * 16 15 13 36 36 H 1.08994 * 109.47105 * 300.00325 * 16 15 13 37 37 H 1.08999 * 109.47359 * 59.99503 * 17 16 15 38 38 H 1.09006 * 109.46829 * 300.00331 * 17 16 15 39 39 H 1.08000 * 120.14346 * 359.94029 * 22 21 19 40 40 H 1.07998 * 119.77155 * 179.72706 * 23 22 21 41 41 H 1.08005 * 119.76585 * 180.24927 * 24 23 22 42 42 H 1.08003 * 120.13848 * 179.74621 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.1356 -1.7854 -1.2291 6 6 2.3601 0.0122 -2.3581 7 7 2.7058 -0.6130 -3.4623 8 14 2.3132 1.8792 -2.3175 9 1 3.5988 2.3951 -1.7822 10 1 2.1053 2.3992 -3.6929 11 1 1.1984 2.3275 -1.4449 12 8 2.0140 -0.6844 1.1855 13 6 2.2172 0.0640 2.2811 14 8 1.9973 1.2517 2.2506 15 6 2.7183 -0.5772 3.5494 16 6 2.8637 0.4890 4.6371 17 6 3.3731 -0.1619 5.9246 18 7 3.5116 0.8590 6.9661 19 6 4.6296 1.5738 7.1873 20 8 5.6676 1.4772 6.5643 21 6 4.3829 2.4968 8.3152 22 6 5.1465 3.4492 8.9709 23 6 4.5988 4.1614 10.0265 24 6 3.2940 3.9347 10.4224 25 6 2.5182 2.9854 9.7756 26 6 3.0540 2.2624 8.7220 27 6 2.5380 1.2046 7.8276 28 8 1.4221 0.7268 7.8650 29 1 -0.3633 0.4348 0.9312 30 1 -0.3634 0.5890 -0.8420 31 1 -0.3633 -1.0238 -0.0889 32 1 2.9367 -0.1047 -4.2555 33 1 3.6872 -1.0408 3.3640 34 1 2.0089 -1.3370 3.8773 35 1 1.8949 0.9530 4.8227 36 1 3.5733 1.2484 4.3089 37 1 4.3418 -0.6257 5.7386 38 1 2.6636 -0.9216 6.2529 39 1 6.1655 3.6328 8.6637 40 1 5.1945 4.9007 10.5411 41 1 2.8771 4.4988 11.2437 42 1 1.5006 2.8097 10.0919 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000753974824.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:44 Heat of formation + Delta-G solvation = -135.305824 kcal Electronic energy + Delta-G solvation = -27003.853963 eV Core-core repulsion = 22913.863134 eV Total energy + Delta-G solvation = -4089.990829 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.43446 -41.40122 -39.83847 -39.51753 -37.90354 -37.19447 -35.43584 -35.18823 -32.82812 -32.24008 -32.12105 -28.83223 -27.49848 -26.23417 -25.33433 -23.56216 -23.24072 -22.58364 -21.28845 -20.95954 -19.47125 -18.85517 -18.58434 -18.37099 -17.70230 -17.58687 -17.32528 -16.94474 -16.47512 -16.10722 -15.72031 -15.60863 -15.42392 -15.22868 -15.03600 -14.85377 -14.62989 -14.31535 -14.09958 -13.76596 -13.57990 -13.24610 -13.14211 -13.10780 -12.98376 -12.92706 -12.62137 -12.61446 -12.02720 -11.99891 -11.64497 -11.54084 -11.47305 -11.39313 -11.20674 -11.04930 -10.90976 -10.22220 -10.20363 -8.50250 -6.59649 -1.04130 -0.01514 0.95790 1.15418 1.21540 1.25366 1.28460 1.35664 1.75291 1.98795 2.16187 2.56408 2.61940 2.87525 3.17585 3.59126 3.61762 3.72112 3.74794 4.05794 4.08871 4.18207 4.20007 4.22117 4.23132 4.30863 4.46159 4.48774 4.54178 4.55040 4.61956 4.79110 4.83835 4.87511 4.95593 5.03878 5.21477 5.27172 5.27433 5.35505 5.51223 5.65949 5.69870 6.02941 6.14007 6.47712 6.48853 6.88589 7.08599 8.65075 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.021123 B = 0.002258 C = 0.002204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.223382 B =12399.312125 C =12701.908247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.180 3.820 3 H 0.034 0.966 4 C -0.531 4.531 5 H 0.050 0.950 6 C 0.035 3.965 7 N -0.921 5.921 8 Si 0.928 3.072 9 H -0.271 1.271 10 H -0.264 1.264 11 H -0.253 1.253 12 O -0.359 6.359 13 C 0.444 3.556 14 O -0.558 6.558 15 C -0.101 4.101 16 C -0.116 4.116 17 C 0.111 3.889 18 N -0.580 5.580 19 C 0.570 3.430 20 O -0.492 6.492 21 C -0.162 4.162 22 C -0.047 4.047 23 C -0.083 4.083 24 C -0.083 4.083 25 C -0.046 4.046 26 C -0.162 4.162 27 C 0.572 3.428 28 O -0.490 6.490 29 H 0.046 0.954 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.276 0.724 33 H 0.131 0.869 34 H 0.139 0.861 35 H 0.062 0.938 36 H 0.057 0.943 37 H 0.116 0.884 38 H 0.119 0.881 39 H 0.153 0.847 40 H 0.180 0.820 41 H 0.181 0.819 42 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.205 9.552 34.485 35.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.127 3.873 3 H 0.052 0.948 4 C -0.568 4.568 5 H 0.068 0.932 6 C -0.166 4.166 7 N -0.559 5.559 8 Si 0.751 3.249 9 H -0.196 1.196 10 H -0.189 1.189 11 H -0.177 1.177 12 O -0.276 6.276 13 C 0.289 3.711 14 O -0.450 6.450 15 C -0.139 4.139 16 C -0.155 4.155 17 C -0.008 4.008 18 N -0.321 5.321 19 C 0.361 3.639 20 O -0.365 6.365 21 C -0.166 4.166 22 C -0.066 4.066 23 C -0.101 4.101 24 C -0.101 4.101 25 C -0.064 4.064 26 C -0.165 4.165 27 C 0.363 3.637 28 O -0.363 6.363 29 H 0.065 0.935 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.149 0.851 34 H 0.157 0.843 35 H 0.081 0.919 36 H 0.075 0.925 37 H 0.134 0.866 38 H 0.137 0.863 39 H 0.171 0.829 40 H 0.197 0.803 41 H 0.198 0.802 42 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 3.126 9.507 33.834 35.283 hybrid contribution 0.011 0.469 -1.146 1.239 sum 3.136 9.975 32.687 34.319 Atomic orbital electron populations 1.22132 0.95381 1.02281 1.00609 1.20813 0.93025 0.92927 0.80580 0.94775 1.20920 1.45885 0.94961 0.95028 0.93175 1.25651 0.93143 1.03157 0.94681 1.69952 1.45273 1.38181 1.02490 0.86033 0.80012 0.80235 0.78620 1.19626 1.18887 1.17717 1.86616 1.76023 1.43785 1.21137 1.24587 0.73668 0.85869 0.86930 1.90574 1.50536 1.18594 1.85324 1.21345 1.06054 0.99439 0.87019 1.21618 1.02158 0.98043 0.93673 1.21878 1.05528 0.88933 0.84479 1.46657 1.14459 1.38095 1.32867 1.18849 0.82086 0.79873 0.83089 1.90803 1.27548 1.66381 1.51814 1.20549 0.96501 1.01017 0.98525 1.21181 1.00476 0.91352 0.93555 1.21963 0.95830 0.98018 0.94283 1.21968 0.93576 0.95272 0.99247 1.21183 1.01451 0.92626 0.91172 1.20552 0.95566 1.00046 1.00347 1.18802 0.83339 0.81606 0.79983 1.90793 1.19178 1.56273 1.70082 0.93538 0.91773 0.91744 0.91400 0.85056 0.84326 0.91908 0.92455 0.86631 0.86256 0.82918 0.80271 0.80202 0.82721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.56 9.53 71.98 0.69 -5.88 16 2 C 0.18 9.28 2.22 29.85 0.07 9.34 16 3 H 0.03 1.84 4.31 -2.38 -0.01 1.83 16 4 C -0.53 -31.28 9.25 25.60 0.24 -31.04 16 5 H 0.05 3.23 8.06 -2.91 -0.02 3.20 16 6 C 0.03 2.04 5.47 84.65 0.46 2.50 16 7 N -0.92 -56.34 13.96 21.45 0.30 -56.04 16 8 Si 0.93 45.17 26.99 68.60 1.85 47.02 16 9 H -0.27 -13.13 7.11 99.48 0.71 -12.42 16 10 H -0.26 -12.04 7.11 99.48 0.71 -11.34 16 11 H -0.25 -11.92 6.82 99.48 0.68 -11.24 16 12 O -0.36 -16.74 9.86 -51.35 -0.51 -17.24 16 13 C 0.44 17.72 7.93 71.24 0.56 18.28 16 14 O -0.56 -25.61 15.20 21.95 0.33 -25.27 16 15 C -0.10 -2.61 5.81 29.85 0.17 -2.44 16 16 C -0.12 -3.00 4.83 30.59 0.15 -2.85 16 17 C 0.11 2.23 5.74 86.38 0.50 2.73 16 18 N -0.58 -13.12 2.62 -762.97 -2.00 -15.12 16 19 C 0.57 13.34 8.02 86.82 0.70 14.03 16 20 O -0.49 -14.04 17.68 -3.56 -0.06 -14.11 16 21 C -0.16 -2.83 6.40 -20.00 -0.13 -2.95 16 22 C -0.05 -0.49 10.09 22.44 0.23 -0.26 16 23 C -0.08 -0.31 10.04 22.36 0.22 -0.09 16 24 C -0.08 -0.29 10.03 22.36 0.22 -0.07 16 25 C -0.05 -0.45 10.09 22.44 0.23 -0.22 16 26 C -0.16 -2.76 6.41 -20.00 -0.13 -2.89 16 27 C 0.57 13.01 8.02 86.82 0.70 13.71 16 28 O -0.49 -13.35 17.68 -3.54 -0.06 -13.41 16 29 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.06 2.80 8.14 -2.39 -0.02 2.78 16 31 H 0.06 2.76 8.14 -2.39 -0.02 2.74 16 32 H 0.28 15.60 8.31 -92.71 -0.77 14.83 16 33 H 0.13 2.83 8.14 -2.39 -0.02 2.81 16 34 H 0.14 2.73 8.14 -2.39 -0.02 2.71 16 35 H 0.06 1.82 8.10 -2.39 -0.02 1.80 16 36 H 0.06 1.73 8.10 -2.39 -0.02 1.71 16 37 H 0.12 1.99 7.97 -2.39 -0.02 1.97 16 38 H 0.12 1.95 7.96 -2.38 -0.02 1.93 16 39 H 0.15 1.19 8.06 -2.91 -0.02 1.17 16 40 H 0.18 -0.62 8.06 -2.91 -0.02 -0.65 16 41 H 0.18 -0.68 8.06 -2.91 -0.02 -0.71 16 42 H 0.16 1.07 8.06 -2.91 -0.02 1.05 16 Total: -1.00 -81.95 370.65 5.74 -76.21 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: 1.02 Total: 6.06 kcal Atomic # 6 Polarization: 7.03 SS G_CDS: 4.87 Total: 11.91 kcal Atomic # 7 Polarization: -69.46 SS G_CDS: -1.70 Total: -71.16 kcal Atomic # 8 Polarization: -69.74 SS G_CDS: -0.30 Total: -70.04 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 1.85 Total: 47.02 kcal Total: -81.95 5.74 -76.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000753974824.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.099 kcal (2) G-P(sol) polarization free energy of solvation -81.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds