Wall clock time and date at job start Tue Mar 31 2020 17:53:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.46800 * 2 1 4 4 C 1.50695 * 109.47217 * 119.99531 * 2 1 3 5 5 H 1.07999 * 120.00174 * 120.00102 * 4 2 1 6 6 C 1.37878 * 119.99986 * 300.00439 * 4 2 1 7 7 N 1.31512 * 119.99978 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99939 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46631 * 60.00202 * 8 6 4 10 10 H 1.48497 * 109.46851 * 179.97438 * 8 6 4 11 11 H 1.48493 * 109.47219 * 300.00154 * 8 6 4 12 12 O 1.45198 * 109.47145 * 239.99998 * 2 1 3 13 13 C 1.34227 * 117.00270 * 90.00053 * 12 2 1 14 14 O 1.20824 * 119.99758 * 359.97438 * 13 12 2 15 15 C 1.50697 * 119.99951 * 179.97438 * 13 12 2 16 16 C 1.53004 * 109.47254 * 179.97438 * 15 13 12 17 17 C 1.52997 * 109.47404 * 179.97438 * 16 15 13 18 18 N 1.46493 * 109.47472 * 180.02562 * 17 16 15 19 19 C 1.34525 * 124.46165 * 269.98470 * 18 17 16 20 20 O 1.21448 * 125.71259 * 0.03301 * 19 18 17 21 21 C 1.47821 * 108.58246 * 180.02562 * 19 18 17 22 22 C 1.38564 * 134.29568 * 180.02562 * 21 19 18 23 23 C 1.38613 * 119.71574 * 180.20994 * 22 21 19 24 24 C 1.38220 * 120.45711 * 359.50655 * 23 22 21 25 25 C 1.38614 * 120.46568 * 0.47968 * 24 23 22 26 26 C 1.38568 * 119.71701 * 359.76831 * 25 24 23 27 27 C 1.34525 * 124.46176 * 90.00094 * 18 17 16 28 28 O 1.21446 * 125.70834 * 0.02562 * 27 18 17 29 29 H 1.08997 * 109.47673 * 300.00094 * 1 2 3 30 30 H 1.09008 * 109.47115 * 60.00668 * 1 2 3 31 31 H 1.09003 * 109.46800 * 179.97438 * 1 2 3 32 32 H 0.97003 * 120.00149 * 180.02562 * 7 6 4 33 33 H 1.09003 * 109.47486 * 60.00117 * 15 13 12 34 34 H 1.09001 * 109.47731 * 300.00064 * 15 13 12 35 35 H 1.08998 * 109.46553 * 60.00355 * 16 15 13 36 36 H 1.08996 * 109.47197 * 300.00337 * 16 15 13 37 37 H 1.09002 * 109.46584 * 60.00249 * 17 16 15 38 38 H 1.09004 * 109.47543 * 300.01033 * 17 16 15 39 39 H 1.08002 * 120.13758 * 359.92268 * 22 21 19 40 40 H 1.07998 * 119.76663 * 179.72326 * 23 22 21 41 41 H 1.08001 * 119.76807 * 180.24655 * 24 23 22 42 42 H 1.07994 * 120.14144 * 179.74580 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1315 6 6 1.6992 -0.2392 2.4827 7 7 0.9435 0.8303 2.6033 8 14 2.3213 -1.1201 4.0080 9 1 3.8063 -1.1205 4.0082 10 1 1.8268 -0.4196 5.2204 11 1 1.8259 -2.5199 4.0079 12 8 2.0140 -0.6845 -1.1855 13 6 2.2172 0.0640 -2.2811 14 8 1.9974 1.2516 -2.2506 15 6 2.7194 -0.5771 -3.5491 16 6 2.8633 0.4888 -4.6372 17 6 3.3738 -0.1619 -5.9244 18 7 3.5121 0.8588 -6.9660 19 6 2.5387 1.2034 -7.8283 20 8 1.4229 0.7254 -7.8656 21 6 3.0544 2.2613 -8.7226 22 6 2.5184 2.9836 -9.7767 23 6 3.2952 3.9301 -10.4263 24 6 4.5963 4.1651 -10.0232 25 6 5.1457 3.4505 -8.9701 26 6 4.3827 2.4975 -8.3146 27 6 4.6295 1.5748 -7.1865 28 8 5.6675 1.4786 -6.5635 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 0.7094 1.1620 3.4843 33 1 2.0105 -1.3374 -3.8773 34 1 3.6885 -1.0401 -3.3631 35 1 3.5719 1.2493 -4.3092 36 1 1.8940 0.9514 -4.8231 37 1 2.6654 -0.9227 -6.2524 38 1 4.3431 -0.6243 -5.7381 39 1 1.5013 2.8064 -10.0937 40 1 2.8797 4.4904 -11.2508 41 1 5.1902 4.9081 -10.5347 42 1 6.1641 3.6355 -8.6622 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000753974827.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:48 Heat of formation + Delta-G solvation = -113.796813 kcal Electronic energy + Delta-G solvation = -26874.559543 eV Core-core repulsion = 22785.501415 eV Total energy + Delta-G solvation = -4089.058128 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.64830 -39.55720 -38.93248 -38.90950 -36.41997 -35.82952 -34.34807 -33.24020 -31.69555 -31.64036 -29.63464 -27.76817 -25.47950 -25.31098 -24.32918 -22.59094 -22.49014 -21.16229 -20.21115 -19.48248 -18.19017 -17.67974 -17.02212 -16.92621 -16.54748 -16.33279 -15.87204 -15.60726 -15.32513 -14.98327 -14.80117 -14.50981 -14.33204 -14.30697 -14.25663 -13.44694 -12.98652 -12.83995 -12.74244 -12.49909 -12.27113 -12.11011 -11.80829 -11.59893 -11.19494 -11.04018 -10.92107 -10.85693 -10.81767 -10.60887 -10.38328 -10.27092 -10.13026 -9.73172 -9.70719 -9.61042 -9.50786 -8.89943 -8.47739 -6.16963 -4.24022 -0.36886 0.46684 1.60954 1.98001 2.61299 3.02064 3.11448 3.21490 3.27433 3.30580 3.33094 3.66733 3.91802 4.11051 4.34012 4.35785 4.54674 4.64607 4.70439 4.81932 4.89539 4.90342 5.13025 5.15898 5.24629 5.25371 5.34551 5.43459 5.57626 5.60284 5.67040 5.91092 5.92466 6.06913 6.17383 6.36753 6.65989 6.87352 6.90293 6.93208 7.19448 7.33846 7.61334 7.74464 7.95772 8.15839 8.65231 8.89867 9.41294 10.90444 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.025874 B = 0.002026 C = 0.001995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.926079 B =13818.130363 C =14034.461729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.215 3.785 3 H 0.046 0.954 4 C -0.521 4.521 5 H 0.068 0.932 6 C 0.061 3.939 7 N -0.890 5.890 8 Si 0.913 3.087 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.274 1.274 12 O -0.357 6.357 13 C 0.452 3.548 14 O -0.523 6.523 15 C -0.112 4.112 16 C -0.126 4.126 17 C 0.111 3.889 18 N -0.574 5.574 19 C 0.574 3.426 20 O -0.458 6.458 21 C -0.139 4.139 22 C -0.046 4.046 23 C -0.097 4.097 24 C -0.097 4.097 25 C -0.046 4.046 26 C -0.138 4.138 27 C 0.573 3.427 28 O -0.457 6.457 29 H 0.099 0.901 30 H 0.015 0.985 31 H 0.037 0.963 32 H 0.267 0.733 33 H 0.103 0.897 34 H 0.104 0.896 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.101 0.899 38 H 0.101 0.899 39 H 0.143 0.857 40 H 0.142 0.858 41 H 0.142 0.858 42 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.561 4.159 -28.940 29.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.162 3.838 3 H 0.064 0.936 4 C -0.559 4.559 5 H 0.086 0.914 6 C -0.141 4.141 7 N -0.527 5.527 8 Si 0.740 3.260 9 H -0.200 1.200 10 H -0.210 1.210 11 H -0.199 1.199 12 O -0.273 6.273 13 C 0.295 3.705 14 O -0.413 6.413 15 C -0.150 4.150 16 C -0.164 4.164 17 C -0.008 4.008 18 N -0.316 5.316 19 C 0.362 3.638 20 O -0.329 6.329 21 C -0.142 4.142 22 C -0.064 4.064 23 C -0.115 4.115 24 C -0.115 4.115 25 C -0.064 4.064 26 C -0.142 4.142 27 C 0.362 3.638 28 O -0.328 6.328 29 H 0.117 0.883 30 H 0.034 0.966 31 H 0.056 0.944 32 H 0.077 0.923 33 H 0.121 0.879 34 H 0.122 0.878 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.119 0.881 38 H 0.119 0.881 39 H 0.160 0.840 40 H 0.160 0.840 41 H 0.160 0.840 42 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 6.339 4.230 -28.327 29.334 hybrid contribution 0.151 -0.263 0.979 1.025 sum 6.490 3.967 -27.348 28.386 Atomic orbital electron populations 1.22158 0.97574 1.00088 1.01387 1.20627 0.91394 0.93911 0.77841 0.93618 1.20990 1.32534 1.13481 0.88920 0.91351 1.24903 0.94948 0.95119 0.99101 1.69892 1.36039 1.22528 1.24272 0.86314 0.79207 0.79518 0.80973 1.19983 1.21046 1.19929 1.86476 1.75750 1.43684 1.21411 1.23230 0.75029 0.86016 0.86273 1.90604 1.48829 1.17061 1.84826 1.21173 1.04071 0.99060 0.90705 1.21738 1.03617 0.98588 0.92487 1.21851 1.04315 0.88901 0.85782 1.46556 1.14301 1.37946 1.32790 1.18376 0.83893 0.81542 0.79962 1.90829 1.18100 1.54890 1.69048 1.20601 0.95437 0.99291 0.98892 1.20830 1.00495 0.92922 0.92181 1.21480 0.93993 0.96696 0.99354 1.21482 0.95578 0.98650 0.95798 1.20833 1.00065 0.92138 0.93388 1.20601 0.95735 0.99626 0.98234 1.18374 0.82687 0.79877 0.82864 1.90832 1.26454 1.65155 1.50330 0.88257 0.96558 0.94429 0.92350 0.87854 0.87756 0.90196 0.90243 0.88099 0.88074 0.83956 0.84029 0.84027 0.83945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.02 9.33 37.16 0.35 -3.67 16 2 C 0.21 5.91 2.56 -27.89 -0.07 5.84 16 3 H 0.05 1.39 7.16 -51.93 -0.37 1.02 16 4 C -0.52 -14.90 8.90 -34.44 -0.31 -15.21 16 5 H 0.07 1.91 7.81 -52.49 -0.41 1.50 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -25.70 11.32 55.43 0.63 -25.07 16 8 Si 0.91 21.37 29.54 -169.99 -5.02 16.34 16 9 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 12 O -0.36 -8.63 9.86 -39.25 -0.39 -9.02 16 13 C 0.45 9.48 7.93 36.00 0.29 9.77 16 14 O -0.52 -12.59 15.20 -18.75 -0.29 -12.87 16 15 C -0.11 -1.57 5.81 -27.88 -0.16 -1.74 16 16 C -0.13 -1.69 4.83 -26.73 -0.13 -1.82 16 17 C 0.11 1.17 5.74 -4.05 -0.02 1.15 16 18 N -0.57 -6.53 2.62 -117.62 -0.31 -6.84 16 19 C 0.57 6.60 8.02 -12.45 -0.10 6.50 16 20 O -0.46 -6.30 17.68 5.41 0.10 -6.21 16 21 C -0.14 -1.26 6.40 -104.83 -0.67 -1.93 16 22 C -0.05 -0.29 10.09 -39.32 -0.40 -0.68 16 23 C -0.10 -0.40 10.04 -39.45 -0.40 -0.79 16 24 C -0.10 -0.40 10.03 -39.45 -0.40 -0.79 16 25 C -0.05 -0.29 10.09 -39.32 -0.40 -0.69 16 26 C -0.14 -1.26 6.41 -104.83 -0.67 -1.94 16 27 C 0.57 6.64 8.02 -12.46 -0.10 6.54 16 28 O -0.46 -6.35 17.68 5.41 0.10 -6.26 16 29 H 0.10 2.75 6.07 -51.93 -0.32 2.43 16 30 H 0.02 0.38 8.14 -51.92 -0.42 -0.04 16 31 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 33 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.10 1.25 8.14 -51.93 -0.42 0.82 16 35 H 0.08 1.20 8.10 -51.93 -0.42 0.78 16 36 H 0.08 1.18 8.10 -51.93 -0.42 0.76 16 37 H 0.10 0.92 7.97 -51.93 -0.41 0.50 16 38 H 0.10 0.93 7.96 -51.93 -0.41 0.51 16 39 H 0.14 0.69 8.06 -52.49 -0.42 0.27 16 40 H 0.14 0.17 8.06 -52.49 -0.42 -0.25 16 41 H 0.14 0.18 8.06 -52.49 -0.42 -0.25 16 42 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16 LS Contribution 371.00 15.07 5.59 5.59 Total: -1.00 -35.43 371.00 -8.16 -43.58 By element: Atomic # 1 Polarization: 3.87 SS G_CDS: -5.28 Total: -1.42 kcal Atomic # 6 Polarization: 5.45 SS G_CDS: -3.28 Total: 2.17 kcal Atomic # 7 Polarization: -32.23 SS G_CDS: 0.32 Total: -31.91 kcal Atomic # 8 Polarization: -33.88 SS G_CDS: -0.48 Total: -34.36 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -35.43 -8.16 -43.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000753974827.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.214 kcal (2) G-P(sol) polarization free energy of solvation -35.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds