Wall clock time and date at job start Tue Mar 31 2020 17:53:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.46800 * 2 1 4 4 C 1.50695 * 109.47217 * 119.99531 * 2 1 3 5 5 H 1.07999 * 120.00174 * 120.00102 * 4 2 1 6 6 C 1.37878 * 119.99986 * 300.00439 * 4 2 1 7 7 N 1.31512 * 119.99978 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99939 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46631 * 60.00202 * 8 6 4 10 10 H 1.48497 * 109.46851 * 179.97438 * 8 6 4 11 11 H 1.48493 * 109.47219 * 300.00154 * 8 6 4 12 12 O 1.45198 * 109.47145 * 239.99998 * 2 1 3 13 13 C 1.34227 * 117.00270 * 90.00053 * 12 2 1 14 14 O 1.20824 * 119.99758 * 359.97438 * 13 12 2 15 15 C 1.50697 * 119.99951 * 179.97438 * 13 12 2 16 16 C 1.53004 * 109.47254 * 179.97438 * 15 13 12 17 17 C 1.52997 * 109.47404 * 179.97438 * 16 15 13 18 18 N 1.46493 * 109.47472 * 180.02562 * 17 16 15 19 19 C 1.34525 * 124.46165 * 269.98470 * 18 17 16 20 20 O 1.21448 * 125.71259 * 0.03301 * 19 18 17 21 21 C 1.47821 * 108.58246 * 180.02562 * 19 18 17 22 22 C 1.38564 * 134.29568 * 180.02562 * 21 19 18 23 23 C 1.38613 * 119.71574 * 180.20994 * 22 21 19 24 24 C 1.38220 * 120.45711 * 359.50655 * 23 22 21 25 25 C 1.38614 * 120.46568 * 0.47968 * 24 23 22 26 26 C 1.38568 * 119.71701 * 359.76831 * 25 24 23 27 27 C 1.34525 * 124.46176 * 90.00094 * 18 17 16 28 28 O 1.21446 * 125.70834 * 0.02562 * 27 18 17 29 29 H 1.08997 * 109.47673 * 300.00094 * 1 2 3 30 30 H 1.09008 * 109.47115 * 60.00668 * 1 2 3 31 31 H 1.09003 * 109.46800 * 179.97438 * 1 2 3 32 32 H 0.97003 * 120.00149 * 180.02562 * 7 6 4 33 33 H 1.09003 * 109.47486 * 60.00117 * 15 13 12 34 34 H 1.09001 * 109.47731 * 300.00064 * 15 13 12 35 35 H 1.08998 * 109.46553 * 60.00355 * 16 15 13 36 36 H 1.08996 * 109.47197 * 300.00337 * 16 15 13 37 37 H 1.09002 * 109.46584 * 60.00249 * 17 16 15 38 38 H 1.09004 * 109.47543 * 300.01033 * 17 16 15 39 39 H 1.08002 * 120.13758 * 359.92268 * 22 21 19 40 40 H 1.07998 * 119.76663 * 179.72326 * 23 22 21 41 41 H 1.08001 * 119.76807 * 180.24655 * 24 23 22 42 42 H 1.07994 * 120.14144 * 179.74580 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1315 6 6 1.6992 -0.2392 2.4827 7 7 0.9435 0.8303 2.6033 8 14 2.3213 -1.1201 4.0080 9 1 3.8063 -1.1205 4.0082 10 1 1.8268 -0.4196 5.2204 11 1 1.8259 -2.5199 4.0079 12 8 2.0140 -0.6845 -1.1855 13 6 2.2172 0.0640 -2.2811 14 8 1.9974 1.2516 -2.2506 15 6 2.7194 -0.5771 -3.5491 16 6 2.8633 0.4888 -4.6372 17 6 3.3738 -0.1619 -5.9244 18 7 3.5121 0.8588 -6.9660 19 6 2.5387 1.2034 -7.8283 20 8 1.4229 0.7254 -7.8656 21 6 3.0544 2.2613 -8.7226 22 6 2.5184 2.9836 -9.7767 23 6 3.2952 3.9301 -10.4263 24 6 4.5963 4.1651 -10.0232 25 6 5.1457 3.4505 -8.9701 26 6 4.3827 2.4975 -8.3146 27 6 4.6295 1.5748 -7.1865 28 8 5.6675 1.4786 -6.5635 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 0.7094 1.1620 3.4843 33 1 2.0105 -1.3374 -3.8773 34 1 3.6885 -1.0401 -3.3631 35 1 3.5719 1.2493 -4.3092 36 1 1.8940 0.9514 -4.8231 37 1 2.6654 -0.9227 -6.2524 38 1 4.3431 -0.6243 -5.7381 39 1 1.5013 2.8064 -10.0937 40 1 2.8797 4.4904 -11.2508 41 1 5.1902 4.9081 -10.5347 42 1 6.1641 3.6355 -8.6622 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000753974827.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:47 Heat of formation + Delta-G solvation = -135.235214 kcal Electronic energy + Delta-G solvation = -26875.489182 eV Core-core repulsion = 22785.501415 eV Total energy + Delta-G solvation = -4089.987767 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.43116 -41.34868 -39.83607 -39.51363 -37.86814 -37.19094 -35.44511 -35.32634 -32.55633 -32.11783 -31.64896 -28.80354 -27.48513 -26.23157 -25.33966 -23.64851 -23.23797 -22.70246 -21.25753 -20.95383 -18.96639 -18.85305 -18.57254 -18.32592 -17.70028 -17.42968 -17.30852 -16.92856 -16.47140 -16.21284 -15.71163 -15.61471 -15.42061 -15.22558 -15.03323 -14.86626 -14.35192 -14.08761 -13.95079 -13.58247 -13.37940 -13.24161 -13.11107 -13.03491 -12.92708 -12.83095 -12.61206 -12.41378 -12.18785 -12.02748 -11.64882 -11.60745 -11.47111 -11.41656 -11.06675 -11.01477 -10.62028 -10.21843 -10.20004 -8.30797 -6.48310 -1.03819 -0.01146 0.96108 1.16171 1.31256 1.40566 1.44847 1.52949 1.75979 2.03483 2.40810 2.56598 2.62456 2.99573 3.17810 3.59498 3.63095 3.71799 3.75957 4.06205 4.12392 4.18600 4.22132 4.22470 4.30648 4.44405 4.49061 4.52893 4.56350 4.74250 4.77671 4.81428 4.84254 4.95896 5.03765 5.14335 5.21865 5.27720 5.46018 5.51424 5.59669 5.70305 5.89499 6.03137 6.06914 6.47883 6.57126 6.93512 7.23667 8.76867 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.025874 B = 0.002026 C = 0.001995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.926079 B =13818.130363 C =14034.461729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.215 3.785 3 H 0.004 0.996 4 C -0.549 4.549 5 H 0.070 0.930 6 C 0.013 3.987 7 N -0.918 5.918 8 Si 0.986 3.014 9 H -0.268 1.268 10 H -0.277 1.277 11 H -0.262 1.262 12 O -0.362 6.362 13 C 0.442 3.558 14 O -0.561 6.561 15 C -0.097 4.097 16 C -0.117 4.117 17 C 0.113 3.887 18 N -0.580 5.580 19 C 0.571 3.429 20 O -0.491 6.491 21 C -0.162 4.162 22 C -0.046 4.046 23 C -0.083 4.083 24 C -0.083 4.083 25 C -0.047 4.047 26 C -0.162 4.162 27 C 0.570 3.430 28 O -0.491 6.491 29 H 0.081 0.919 30 H 0.021 0.979 31 H 0.048 0.952 32 H 0.271 0.729 33 H 0.138 0.862 34 H 0.135 0.865 35 H 0.056 0.944 36 H 0.058 0.942 37 H 0.119 0.881 38 H 0.118 0.882 39 H 0.155 0.845 40 H 0.181 0.819 41 H 0.181 0.819 42 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.443 4.014 -31.015 32.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.162 3.838 3 H 0.022 0.978 4 C -0.587 4.587 5 H 0.088 0.912 6 C -0.187 4.187 7 N -0.556 5.556 8 Si 0.809 3.191 9 H -0.193 1.193 10 H -0.202 1.202 11 H -0.187 1.187 12 O -0.279 6.279 13 C 0.288 3.712 14 O -0.453 6.453 15 C -0.135 4.135 16 C -0.155 4.155 17 C -0.007 4.007 18 N -0.321 5.321 19 C 0.362 3.638 20 O -0.364 6.364 21 C -0.165 4.165 22 C -0.065 4.065 23 C -0.101 4.101 24 C -0.101 4.101 25 C -0.065 4.065 26 C -0.166 4.166 27 C 0.361 3.639 28 O -0.365 6.365 29 H 0.099 0.901 30 H 0.040 0.960 31 H 0.067 0.933 32 H 0.080 0.920 33 H 0.156 0.844 34 H 0.153 0.847 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.137 0.863 38 H 0.136 0.864 39 H 0.172 0.828 40 H 0.198 0.802 41 H 0.198 0.802 42 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 7.223 4.084 -30.439 31.550 hybrid contribution -0.116 -0.069 1.475 1.481 sum 7.107 4.015 -28.964 30.092 Atomic orbital electron populations 1.21979 0.96763 1.00471 1.00715 1.20340 0.92061 0.91983 0.79417 0.97839 1.21279 1.33515 1.13985 0.89884 0.91219 1.25902 0.94712 0.95708 1.02338 1.70021 1.36584 1.23685 1.25323 0.85184 0.78772 0.78631 0.76523 1.19288 1.20238 1.18653 1.86469 1.76131 1.43724 1.21538 1.24619 0.73775 0.85797 0.87029 1.90587 1.50404 1.18946 1.85339 1.21326 1.06075 0.99311 0.86782 1.21614 1.01984 0.98089 0.93829 1.21871 1.05579 0.88895 0.84341 1.46660 1.14527 1.38104 1.32817 1.18828 0.83334 0.81631 0.80016 1.90795 1.19192 1.56284 1.70134 1.20554 0.95613 1.00029 1.00351 1.21185 1.01417 0.92686 0.91187 1.21967 0.93596 0.95249 0.99243 1.21966 0.95816 0.98002 0.94290 1.21182 1.00481 0.91295 0.93559 1.20551 0.96481 1.01047 0.98496 1.18840 0.82074 0.79854 0.83095 1.90797 1.27505 1.66387 1.51792 0.90091 0.95995 0.93333 0.91969 0.84426 0.84697 0.92518 0.92302 0.86256 0.86408 0.82776 0.80189 0.80216 0.82847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.56 9.33 71.98 0.67 -6.89 16 2 C 0.22 12.27 2.56 29.85 0.08 12.34 16 3 H 0.00 0.24 7.16 -2.39 -0.02 0.23 16 4 C -0.55 -31.92 8.90 25.60 0.23 -31.69 16 5 H 0.07 3.92 7.81 -2.91 -0.02 3.90 16 6 C 0.01 0.73 5.30 84.66 0.45 1.18 16 7 N -0.92 -54.02 11.32 21.45 0.24 -53.78 16 8 Si 0.99 43.58 29.54 68.60 2.03 45.61 16 9 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 10 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16 11 H -0.26 -11.03 7.11 99.48 0.71 -10.33 16 12 O -0.36 -17.85 9.86 -51.38 -0.51 -18.36 16 13 C 0.44 19.01 7.93 71.23 0.56 19.57 16 14 O -0.56 -28.36 15.20 21.97 0.33 -28.03 16 15 C -0.10 -2.66 5.81 29.85 0.17 -2.49 16 16 C -0.12 -3.20 4.83 30.59 0.15 -3.06 16 17 C 0.11 2.36 5.74 86.38 0.50 2.86 16 18 N -0.58 -13.65 2.62 -762.97 -2.00 -15.66 16 19 C 0.57 13.60 8.02 86.82 0.70 14.30 16 20 O -0.49 -13.97 17.68 -3.55 -0.06 -14.03 16 21 C -0.16 -2.91 6.40 -20.00 -0.13 -3.04 16 22 C -0.05 -0.49 10.09 22.44 0.23 -0.26 16 23 C -0.08 -0.35 10.04 22.35 0.22 -0.12 16 24 C -0.08 -0.35 10.03 22.36 0.22 -0.13 16 25 C -0.05 -0.50 10.09 22.44 0.23 -0.28 16 26 C -0.16 -2.93 6.41 -20.00 -0.13 -3.06 16 27 C 0.57 13.72 8.02 86.82 0.70 14.42 16 28 O -0.49 -14.24 17.68 -3.55 -0.06 -14.30 16 29 H 0.08 4.62 6.07 -2.39 -0.01 4.61 16 30 H 0.02 1.08 8.14 -2.38 -0.02 1.06 16 31 H 0.05 2.42 8.14 -2.39 -0.02 2.40 16 32 H 0.27 14.90 8.31 -92.71 -0.77 14.13 16 33 H 0.14 2.91 8.14 -2.39 -0.02 2.89 16 34 H 0.14 2.96 8.14 -2.39 -0.02 2.94 16 35 H 0.06 1.80 8.10 -2.39 -0.02 1.79 16 36 H 0.06 1.84 8.10 -2.39 -0.02 1.82 16 37 H 0.12 2.06 7.97 -2.39 -0.02 2.04 16 38 H 0.12 2.07 7.96 -2.39 -0.02 2.05 16 39 H 0.15 1.21 8.06 -2.91 -0.02 1.19 16 40 H 0.18 -0.57 8.06 -2.91 -0.02 -0.60 16 41 H 0.18 -0.55 8.06 -2.91 -0.02 -0.57 16 42 H 0.15 1.25 8.06 -2.91 -0.02 1.23 16 Total: -1.00 -81.91 371.00 5.86 -76.05 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: 1.05 Total: 8.85 kcal Atomic # 6 Polarization: 8.80 SS G_CDS: 4.84 Total: 13.65 kcal Atomic # 7 Polarization: -67.68 SS G_CDS: -1.76 Total: -69.44 kcal Atomic # 8 Polarization: -74.42 SS G_CDS: -0.30 Total: -74.72 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Total: -81.91 5.86 -76.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000753974827.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.187 kcal (2) G-P(sol) polarization free energy of solvation -81.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds