Wall clock time and date at job start Tue Mar 31 2020 17:52:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08987 * 109.47495 * 2 1 4 4 C 1.50700 * 109.46763 * 239.99548 * 2 1 3 5 5 H 1.08003 * 119.99857 * 240.00289 * 4 2 1 6 6 C 1.37880 * 119.99810 * 60.00442 * 4 2 1 7 7 N 1.31511 * 119.99889 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99658 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47245 * 269.99849 * 8 6 4 10 10 H 1.48499 * 109.47135 * 30.00173 * 8 6 4 11 11 H 1.48501 * 109.46841 * 149.99959 * 8 6 4 12 12 N 1.46501 * 109.46690 * 120.00114 * 2 1 3 13 13 C 1.34780 * 119.99931 * 274.99037 * 12 2 1 14 14 O 1.21277 * 119.99654 * 0.02562 * 13 12 2 15 15 C 1.50707 * 119.99766 * 180.02562 * 13 12 2 16 16 C 1.52994 * 109.46967 * 85.11957 * 15 13 12 17 17 O 1.42899 * 109.46928 * 325.11696 * 15 13 12 18 18 C 1.50700 * 109.46765 * 205.12035 * 15 13 12 19 19 C 1.38251 * 120.00253 * 112.36020 * 18 15 13 20 20 C 1.38217 * 120.00107 * 179.97438 * 19 18 15 21 21 C 1.38262 * 119.99921 * 0.02562 * 20 19 18 22 22 C 1.38216 * 119.99982 * 0.02562 * 21 20 19 23 23 C 1.50697 * 119.99749 * 179.97438 * 22 21 20 24 24 F 1.39901 * 109.47310 * 0.02562 * 23 22 21 25 25 F 1.39904 * 109.46973 * 120.00297 * 23 22 21 26 26 F 1.39906 * 109.47105 * 240.00005 * 23 22 21 27 27 C 1.38224 * 119.99630 * 292.08766 * 18 15 13 28 28 H 1.08999 * 109.46709 * 59.99575 * 1 2 3 29 29 H 1.08991 * 109.47379 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46754 * 300.00303 * 1 2 3 31 31 H 0.97000 * 119.99371 * 179.97438 * 7 6 4 32 32 H 0.97004 * 120.00137 * 95.00120 * 12 2 1 33 33 H 1.08999 * 109.47362 * 60.00112 * 16 15 13 34 34 H 1.09001 * 109.47000 * 179.97438 * 16 15 13 35 35 H 1.08997 * 109.46962 * 299.99546 * 16 15 13 36 36 H 0.96706 * 114.00159 * 299.99765 * 17 15 13 37 37 H 1.07995 * 120.00189 * 0.02562 * 19 18 15 38 38 H 1.07997 * 119.99889 * 180.02562 * 20 19 18 39 39 H 1.07998 * 120.00054 * 179.97438 * 21 20 19 40 40 H 1.07998 * 119.99942 * 0.02562 * 27 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5887 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3224 -1.1198 -4.0079 9 1 3.6304 -0.5444 -4.4119 10 1 2.4877 -2.5656 -3.7121 11 1 1.3443 -0.9492 -5.1122 12 7 2.0183 -0.6907 1.1962 13 6 2.1471 -0.0183 2.3572 14 8 1.8584 1.1584 2.4116 15 6 2.6499 -0.7286 3.5875 16 6 4.1799 -0.7257 3.5886 17 8 2.1761 -2.0768 3.5862 18 6 2.1453 -0.0200 4.8181 19 6 1.2260 -0.6394 5.6443 20 6 0.7636 0.0103 6.7732 21 6 1.2199 1.2799 7.0759 22 6 2.1382 1.8995 6.2492 23 6 2.6351 3.2835 6.5788 24 9 2.0286 3.7281 7.7586 25 9 4.0230 3.2517 6.7518 26 9 2.3154 4.1553 5.5323 27 6 2.6058 1.2469 5.1236 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 0.7088 1.1611 -3.4844 32 1 2.2490 -1.6319 1.1526 33 1 4.5413 0.3026 3.5896 34 1 4.5435 -1.2391 4.4787 35 1 4.5448 -1.2382 2.6986 36 1 1.2122 -2.1549 3.5855 37 1 0.8699 -1.6312 5.4082 38 1 0.0458 -0.4737 7.4189 39 1 0.8583 1.7878 7.9577 40 1 3.3268 1.7291 4.4803 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000754849588.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:52:31 Heat of formation + Delta-G solvation = -214.673468 kcal Electronic energy + Delta-G solvation = -29006.669334 eV Core-core repulsion = 24371.380125 eV Total energy + Delta-G solvation = -4635.289209 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.118 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -50.21336 -47.75972 -47.63572 -40.58362 -38.70620 -36.76162 -34.94157 -32.55724 -32.34748 -32.05132 -29.80388 -28.69185 -26.11749 -25.32315 -24.64707 -22.75819 -22.02030 -20.63046 -19.53744 -18.75848 -18.52312 -18.42970 -18.05168 -16.64918 -16.22291 -15.76296 -15.51775 -15.17812 -14.69035 -14.61514 -14.56281 -14.29252 -14.14245 -14.10017 -13.82273 -13.80415 -13.44211 -13.13955 -13.07724 -12.88136 -12.49322 -12.48204 -12.21447 -12.02465 -11.76053 -11.68155 -11.35754 -11.12518 -11.02736 -10.85096 -10.74908 -10.34811 -10.28093 -9.43087 -9.14255 -9.11549 -8.82335 -8.59329 -8.01037 -6.16396 -4.26057 0.77802 1.08566 2.58248 3.09850 3.22409 3.24983 3.29536 3.31644 3.63227 3.85053 3.92696 4.06959 4.32042 4.36928 4.42706 4.65911 4.81608 4.97106 5.10644 5.16024 5.23495 5.25517 5.47389 5.61745 5.70781 5.75089 5.97723 6.04402 6.07834 6.26424 6.55834 6.74752 6.88181 7.07485 7.26038 7.35888 7.51174 7.64568 7.84818 8.09023 8.56053 8.70740 8.99020 9.41498 10.89507 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.018152 B = 0.003141 C = 0.002947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.171921 B = 8912.322908 C = 9499.424400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.263 3.737 3 H 0.049 0.951 4 C -0.535 4.535 5 H 0.062 0.938 6 C 0.067 3.933 7 N -0.883 5.883 8 Si 0.902 3.098 9 H -0.279 1.279 10 H -0.273 1.273 11 H -0.285 1.285 12 N -0.694 5.694 13 C 0.477 3.523 14 O -0.541 6.541 15 C 0.157 3.843 16 C -0.134 4.134 17 O -0.543 6.543 18 C -0.097 4.097 19 C -0.078 4.078 20 C -0.124 4.124 21 C -0.074 4.074 22 C -0.187 4.187 23 C 0.509 3.491 24 F -0.180 7.180 25 F -0.178 7.178 26 F -0.171 7.171 27 C -0.026 4.026 28 H 0.091 0.909 29 H 0.027 0.973 30 H 0.013 0.987 31 H 0.265 0.735 32 H 0.395 0.605 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.381 0.619 37 H 0.135 0.865 38 H 0.135 0.865 39 H 0.136 0.864 40 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.782 -2.512 19.645 19.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.162 3.838 3 H 0.067 0.933 4 C -0.573 4.573 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.520 5.520 8 Si 0.729 3.271 9 H -0.205 1.205 10 H -0.198 1.198 11 H -0.211 1.211 12 N -0.342 5.342 13 C 0.259 3.741 14 O -0.420 6.420 15 C 0.113 3.887 16 C -0.192 4.192 17 O -0.349 6.349 18 C -0.098 4.098 19 C -0.096 4.096 20 C -0.141 4.141 21 C -0.092 4.092 22 C -0.188 4.188 23 C 0.455 3.545 24 F -0.162 7.162 25 F -0.160 7.160 26 F -0.153 7.153 27 C -0.045 4.045 28 H 0.110 0.890 29 H 0.046 0.954 30 H 0.032 0.968 31 H 0.075 0.925 32 H 0.228 0.772 33 H 0.097 0.903 34 H 0.093 0.907 35 H 0.096 0.904 36 H 0.230 0.770 37 H 0.153 0.847 38 H 0.153 0.847 39 H 0.154 0.846 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 2.128 -1.633 19.490 19.674 hybrid contribution -0.199 -0.445 -0.885 1.010 sum 1.929 -2.078 18.605 18.820 Atomic orbital electron populations 1.22073 0.98357 0.99122 1.00946 1.18802 0.91087 0.94012 0.79941 0.93327 1.21204 1.32582 1.13306 0.90233 0.91991 1.24887 0.94739 0.94945 0.99084 1.69899 1.35739 1.22453 1.23956 0.86438 0.78627 0.79872 0.82115 1.20524 1.19789 1.21058 1.46529 1.63672 1.13983 1.10012 1.20831 0.79779 0.88023 0.85425 1.90705 1.50568 1.15754 1.84927 1.20294 0.96620 0.81639 0.90161 1.21767 0.89793 1.03503 1.04095 1.86572 1.27410 1.24209 1.96725 1.20040 0.98197 0.94937 0.96659 1.21168 0.94704 0.99949 0.93776 1.21053 1.00714 0.94596 0.97784 1.20991 0.94546 0.95217 0.98457 1.19911 1.04531 0.93845 1.00515 1.18285 0.75301 0.86648 0.74259 1.93144 1.83277 1.90881 1.48879 1.93209 1.30653 1.96859 1.95244 1.93264 1.92445 1.71918 1.57628 1.20679 0.97254 0.93337 0.93187 0.89050 0.95410 0.96758 0.92526 0.77189 0.90348 0.90742 0.90380 0.76989 0.84735 0.84731 0.84586 0.84514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.55 9.26 37.16 0.34 -3.21 16 2 C 0.26 6.52 2.56 -69.08 -0.18 6.35 16 3 H 0.05 1.40 7.58 -51.94 -0.39 1.01 16 4 C -0.53 -13.91 8.73 -34.44 -0.30 -14.22 16 5 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 7 N -0.88 -24.57 11.32 55.43 0.63 -23.95 16 8 Si 0.90 20.39 29.54 -169.99 -5.02 15.36 16 9 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 10 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 11 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 12 N -0.69 -13.86 4.98 -54.93 -0.27 -14.13 16 13 C 0.48 8.95 6.65 -10.98 -0.07 8.87 16 14 O -0.54 -12.18 14.89 5.56 0.08 -12.09 16 15 C 0.16 2.20 1.16 -92.92 -0.11 2.09 16 16 C -0.13 -1.68 8.54 37.15 0.32 -1.36 16 17 O -0.54 -6.50 11.51 -35.23 -0.41 -6.90 16 18 C -0.10 -1.29 4.56 -104.62 -0.48 -1.77 16 19 C -0.08 -0.84 9.24 -39.58 -0.37 -1.20 16 20 C -0.12 -1.18 10.05 -39.58 -0.40 -1.58 16 21 C -0.07 -0.78 9.43 -39.58 -0.37 -1.16 16 22 C -0.19 -2.38 5.37 -104.62 -0.56 -2.94 16 23 C 0.51 6.49 3.32 36.00 0.12 6.61 16 24 F -0.18 -2.11 15.97 2.25 0.04 -2.07 16 25 F -0.18 -2.26 17.23 2.25 0.04 -2.22 16 26 F -0.17 -2.51 17.24 2.25 0.04 -2.47 16 27 C -0.03 -0.37 7.57 -39.58 -0.30 -0.67 16 28 H 0.09 2.43 6.07 -51.93 -0.32 2.12 16 29 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 32 H 0.39 7.05 7.97 -40.82 -0.33 6.73 16 33 H 0.08 0.97 6.99 -51.93 -0.36 0.61 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.38 3.60 7.74 45.56 0.35 3.96 16 37 H 0.13 1.11 6.43 -52.49 -0.34 0.78 16 38 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 39 H 0.14 1.15 7.16 -52.49 -0.38 0.78 16 40 H 0.14 2.00 6.97 -52.49 -0.37 1.64 16 LS Contribution 349.31 15.07 5.26 5.26 Total: -1.00 -30.55 349.31 -5.84 -36.38 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: -3.78 Total: 9.33 kcal Atomic # 6 Polarization: -0.06 SS G_CDS: -2.45 Total: -2.51 kcal Atomic # 7 Polarization: -38.43 SS G_CDS: 0.35 Total: -38.08 kcal Atomic # 8 Polarization: -18.68 SS G_CDS: -0.32 Total: -19.00 kcal Atomic # 9 Polarization: -6.87 SS G_CDS: 0.11 Total: -6.76 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.55 -5.84 -36.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754849588.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -178.289 kcal (2) G-P(sol) polarization free energy of solvation -30.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -208.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -214.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds