Wall clock time and date at job start Tue Mar 31 2020 17:52:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08987 * 109.47495 * 2 1 4 4 C 1.50700 * 109.46763 * 239.99548 * 2 1 3 5 5 H 1.08003 * 119.99857 * 240.00289 * 4 2 1 6 6 C 1.37880 * 119.99810 * 60.00442 * 4 2 1 7 7 N 1.31511 * 119.99889 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99658 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47245 * 269.99849 * 8 6 4 10 10 H 1.48499 * 109.47135 * 30.00173 * 8 6 4 11 11 H 1.48501 * 109.46841 * 149.99959 * 8 6 4 12 12 N 1.46501 * 109.46690 * 120.00114 * 2 1 3 13 13 C 1.34780 * 119.99931 * 274.99037 * 12 2 1 14 14 O 1.21277 * 119.99654 * 0.02562 * 13 12 2 15 15 C 1.50707 * 119.99766 * 180.02562 * 13 12 2 16 16 C 1.52994 * 109.46967 * 85.11957 * 15 13 12 17 17 O 1.42899 * 109.46928 * 325.11696 * 15 13 12 18 18 C 1.50700 * 109.46765 * 205.12035 * 15 13 12 19 19 C 1.38251 * 120.00253 * 112.36020 * 18 15 13 20 20 C 1.38217 * 120.00107 * 179.97438 * 19 18 15 21 21 C 1.38262 * 119.99921 * 0.02562 * 20 19 18 22 22 C 1.38216 * 119.99982 * 0.02562 * 21 20 19 23 23 C 1.50697 * 119.99749 * 179.97438 * 22 21 20 24 24 F 1.39901 * 109.47310 * 0.02562 * 23 22 21 25 25 F 1.39904 * 109.46973 * 120.00297 * 23 22 21 26 26 F 1.39906 * 109.47105 * 240.00005 * 23 22 21 27 27 C 1.38224 * 119.99630 * 292.08766 * 18 15 13 28 28 H 1.08999 * 109.46709 * 59.99575 * 1 2 3 29 29 H 1.08991 * 109.47379 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46754 * 300.00303 * 1 2 3 31 31 H 0.97000 * 119.99371 * 179.97438 * 7 6 4 32 32 H 0.97004 * 120.00137 * 95.00120 * 12 2 1 33 33 H 1.08999 * 109.47362 * 60.00112 * 16 15 13 34 34 H 1.09001 * 109.47000 * 179.97438 * 16 15 13 35 35 H 1.08997 * 109.46962 * 299.99546 * 16 15 13 36 36 H 0.96706 * 114.00159 * 299.99765 * 17 15 13 37 37 H 1.07995 * 120.00189 * 0.02562 * 19 18 15 38 38 H 1.07997 * 119.99889 * 180.02562 * 20 19 18 39 39 H 1.07998 * 120.00054 * 179.97438 * 21 20 19 40 40 H 1.07998 * 119.99942 * 0.02562 * 27 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5887 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3224 -1.1198 -4.0079 9 1 3.6304 -0.5444 -4.4119 10 1 2.4877 -2.5656 -3.7121 11 1 1.3443 -0.9492 -5.1122 12 7 2.0183 -0.6907 1.1962 13 6 2.1471 -0.0183 2.3572 14 8 1.8584 1.1584 2.4116 15 6 2.6499 -0.7286 3.5875 16 6 4.1799 -0.7257 3.5886 17 8 2.1761 -2.0768 3.5862 18 6 2.1453 -0.0200 4.8181 19 6 1.2260 -0.6394 5.6443 20 6 0.7636 0.0103 6.7732 21 6 1.2199 1.2799 7.0759 22 6 2.1382 1.8995 6.2492 23 6 2.6351 3.2835 6.5788 24 9 2.0286 3.7281 7.7586 25 9 4.0230 3.2517 6.7518 26 9 2.3154 4.1553 5.5323 27 6 2.6058 1.2469 5.1236 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 0.7088 1.1611 -3.4844 32 1 2.2490 -1.6319 1.1526 33 1 4.5413 0.3026 3.5896 34 1 4.5435 -1.2391 4.4787 35 1 4.5448 -1.2382 2.6986 36 1 1.2122 -2.1549 3.5855 37 1 0.8699 -1.6312 5.4082 38 1 0.0458 -0.4737 7.4189 39 1 0.8583 1.7878 7.9577 40 1 3.3268 1.7291 4.4803 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000754849588.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:52:30 Heat of formation + Delta-G solvation = -235.118308 kcal Electronic energy + Delta-G solvation = -29007.555889 eV Core-core repulsion = 24371.380125 eV Total energy + Delta-G solvation = -4636.175763 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.118 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -51.23711 -48.75326 -48.70652 -41.74609 -39.94046 -37.92117 -36.76903 -34.29800 -33.50027 -32.94322 -31.17085 -30.17287 -27.36053 -27.08047 -25.80774 -23.97382 -23.10731 -22.09192 -21.05888 -19.81789 -19.56212 -19.52288 -19.34697 -18.01651 -17.43665 -17.24864 -16.75850 -16.42808 -16.34780 -15.88578 -15.61993 -15.37920 -15.18082 -15.14751 -14.98603 -14.86926 -14.73852 -14.46781 -14.37455 -14.07715 -13.81793 -13.67256 -13.41755 -13.27082 -13.12960 -12.98487 -12.89330 -12.76952 -12.61378 -12.28256 -12.25258 -12.13553 -11.83522 -11.12991 -10.65382 -10.52445 -10.17983 -9.93658 -9.78524 -8.18705 -6.36343 -0.10938 0.18661 1.44838 1.45151 1.55810 1.57973 1.64041 2.20390 2.41026 2.63968 2.65247 2.94162 3.03939 3.11972 3.35273 3.40003 3.77196 3.84344 3.97844 4.07967 4.20084 4.39525 4.57879 4.67895 4.70158 4.75704 4.84431 4.89834 5.05372 5.07673 5.11906 5.25484 5.35430 5.41112 5.58377 5.65907 5.73702 5.86763 6.08357 6.42472 6.71217 6.91733 7.29978 7.47514 8.87319 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.018152 B = 0.003141 C = 0.002947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.171921 B = 8912.322908 C = 9499.424400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.270 3.730 3 H -0.003 1.003 4 C -0.547 4.547 5 H 0.073 0.927 6 C 0.016 3.984 7 N -0.917 5.917 8 Si 0.971 3.029 9 H -0.279 1.279 10 H -0.259 1.259 11 H -0.284 1.284 12 N -0.691 5.691 13 C 0.474 3.526 14 O -0.583 6.583 15 C 0.177 3.823 16 C -0.136 4.136 17 O -0.535 6.535 18 C -0.117 4.117 19 C -0.075 4.075 20 C -0.114 4.114 21 C -0.072 4.072 22 C -0.202 4.202 23 C 0.510 3.490 24 F -0.172 7.172 25 F -0.180 7.180 26 F -0.188 7.188 27 C -0.048 4.048 28 H 0.065 0.935 29 H 0.043 0.957 30 H 0.012 0.988 31 H 0.265 0.735 32 H 0.407 0.593 33 H 0.070 0.930 34 H 0.098 0.902 35 H 0.075 0.925 36 H 0.394 0.606 37 H 0.164 0.836 38 H 0.175 0.825 39 H 0.159 0.841 40 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.413 -5.112 21.216 21.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.166 3.834 3 H 0.015 0.985 4 C -0.585 4.585 5 H 0.091 0.909 6 C -0.184 4.184 7 N -0.555 5.555 8 Si 0.795 3.205 9 H -0.205 1.205 10 H -0.183 1.183 11 H -0.210 1.210 12 N -0.340 5.340 13 C 0.259 3.741 14 O -0.463 6.463 15 C 0.132 3.868 16 C -0.193 4.193 17 O -0.343 6.343 18 C -0.118 4.118 19 C -0.093 4.093 20 C -0.131 4.131 21 C -0.090 4.090 22 C -0.203 4.203 23 C 0.456 3.544 24 F -0.154 7.154 25 F -0.162 7.162 26 F -0.169 7.169 27 C -0.067 4.067 28 H 0.084 0.916 29 H 0.062 0.938 30 H 0.031 0.969 31 H 0.074 0.926 32 H 0.243 0.757 33 H 0.089 0.911 34 H 0.116 0.884 35 H 0.094 0.906 36 H 0.245 0.755 37 H 0.181 0.819 38 H 0.192 0.808 39 H 0.177 0.823 40 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 1.765 -4.271 21.092 21.592 hybrid contribution -0.113 0.409 -1.284 1.352 sum 1.652 -3.862 19.808 20.249 Atomic orbital electron populations 1.21872 0.98045 0.99585 0.99531 1.18373 0.91275 0.91823 0.81895 0.98494 1.21536 1.32611 1.13571 0.90785 0.90918 1.25781 0.94817 0.95558 1.02291 1.70051 1.36932 1.23950 1.24609 0.85362 0.77748 0.79274 0.78071 1.20459 1.18281 1.20959 1.46255 1.64005 1.14416 1.09312 1.21792 0.78322 0.87649 0.86338 1.90685 1.51995 1.17919 1.85748 1.19956 0.97144 0.81913 0.87764 1.21810 0.88904 1.03454 1.05127 1.86574 1.28776 1.22463 1.96464 1.20049 0.99777 0.94957 0.97045 1.21557 0.93278 1.01041 0.93413 1.21527 1.00272 0.93851 0.97444 1.21372 0.93311 0.95757 0.98516 1.19987 1.05673 0.93690 1.00938 1.18364 0.75274 0.86720 0.74089 1.93151 1.83105 1.90846 1.48259 1.93198 1.30883 1.96863 1.95226 1.93229 1.92583 1.72551 1.58559 1.20618 0.97983 0.94195 0.93856 0.91638 0.93783 0.96926 0.92561 0.75693 0.91083 0.88356 0.90595 0.75474 0.81879 0.80772 0.82319 0.86681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.51 9.26 71.98 0.67 -5.85 16 2 C 0.27 13.75 2.56 44.25 0.11 13.86 16 3 H 0.00 -0.17 7.58 -2.39 -0.02 -0.19 16 4 C -0.55 -28.59 8.73 25.60 0.22 -28.37 16 5 H 0.07 3.56 7.74 -2.91 -0.02 3.54 16 6 C 0.02 0.83 5.30 84.66 0.45 1.28 16 7 N -0.92 -52.29 11.32 21.45 0.24 -52.05 16 8 Si 0.97 41.61 29.54 68.60 2.03 43.64 16 9 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 10 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 11 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 12 N -0.69 -27.72 4.98 -446.09 -2.22 -29.94 16 13 C 0.47 18.00 6.65 87.66 0.58 18.58 16 14 O -0.58 -27.38 14.89 -3.02 -0.04 -27.42 16 15 C 0.18 4.76 1.16 -12.29 -0.01 4.74 16 16 C -0.14 -3.30 8.54 71.98 0.62 -2.68 16 17 O -0.53 -11.34 11.51 -148.98 -1.71 -13.05 16 18 C -0.12 -2.97 4.56 -19.86 -0.09 -3.06 16 19 C -0.08 -1.37 9.24 22.27 0.21 -1.17 16 20 C -0.11 -1.72 10.05 22.27 0.22 -1.49 16 21 C -0.07 -1.33 9.43 22.27 0.21 -1.12 16 22 C -0.20 -5.02 5.37 -19.87 -0.11 -5.13 16 23 C 0.51 13.05 3.32 71.24 0.24 13.28 16 24 F -0.17 -3.86 15.97 44.97 0.72 -3.14 16 25 F -0.18 -4.64 17.23 44.97 0.77 -3.87 16 26 F -0.19 -5.73 17.24 44.97 0.78 -4.95 16 27 C -0.05 -1.36 7.57 22.27 0.17 -1.19 16 28 H 0.06 3.59 6.07 -2.39 -0.01 3.58 16 29 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.27 14.33 8.31 -92.71 -0.77 13.56 16 32 H 0.41 14.16 7.97 -92.71 -0.74 13.42 16 33 H 0.07 1.81 6.99 -2.39 -0.02 1.80 16 34 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.39 6.15 7.74 -74.05 -0.57 5.57 16 37 H 0.16 1.95 6.43 -2.91 -0.02 1.93 16 38 H 0.17 1.28 8.06 -2.91 -0.02 1.25 16 39 H 0.16 2.16 7.16 -2.91 -0.02 2.14 16 40 H 0.12 3.64 6.97 -2.91 -0.02 3.62 16 Total: -1.00 -68.70 349.31 3.84 -64.85 By element: Atomic # 1 Polarization: 24.44 SS G_CDS: -0.20 Total: 24.24 kcal Atomic # 6 Polarization: -1.79 SS G_CDS: 3.48 Total: 1.70 kcal Atomic # 7 Polarization: -80.01 SS G_CDS: -1.98 Total: -81.99 kcal Atomic # 8 Polarization: -38.71 SS G_CDS: -1.76 Total: -40.47 kcal Atomic # 9 Polarization: -14.23 SS G_CDS: 2.27 Total: -11.96 kcal Atomic # 14 Polarization: 41.61 SS G_CDS: 2.03 Total: 43.64 kcal Total: -68.70 3.84 -64.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754849588.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -170.268 kcal (2) G-P(sol) polarization free energy of solvation -68.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -238.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -235.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds