Wall clock time and date at job start Tue Mar 31 2020 17:52:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47052 * 2 1 4 4 C 1.50693 * 109.47376 * 119.99861 * 2 1 3 5 5 H 1.08009 * 119.99905 * 119.99765 * 4 2 1 6 6 C 1.37877 * 119.99988 * 300.00185 * 4 2 1 7 7 N 1.31515 * 120.00009 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 120.00062 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47471 * 59.99742 * 8 6 4 10 10 H 1.48494 * 109.47346 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.47195 * 300.00029 * 8 6 4 12 12 N 1.46504 * 109.47074 * 239.99843 * 2 1 3 13 13 C 1.34782 * 119.99690 * 84.99999 * 12 2 1 14 14 O 1.21280 * 119.99994 * 359.97438 * 13 12 2 15 15 C 1.50698 * 119.99651 * 180.02562 * 13 12 2 16 16 C 1.53002 * 109.47144 * 84.72054 * 15 13 12 17 17 O 1.42904 * 109.47205 * 324.72220 * 15 13 12 18 18 C 1.50702 * 109.47090 * 204.72193 * 15 13 12 19 19 C 1.38259 * 119.99934 * 292.43004 * 18 15 13 20 20 C 1.38208 * 120.00032 * 180.02562 * 19 18 15 21 21 C 1.38256 * 120.00055 * 0.24750 * 20 19 18 22 22 C 1.38216 * 119.99964 * 359.47673 * 21 20 19 23 23 C 1.50700 * 120.00359 * 180.27237 * 22 21 20 24 24 F 1.39894 * 109.47159 * 270.27766 * 23 22 21 25 25 F 1.39902 * 109.46776 * 30.27708 * 23 22 21 26 26 F 1.39897 * 109.47391 * 150.27347 * 23 22 21 27 27 C 1.38209 * 120.00184 * 112.44880 * 18 15 13 28 28 H 1.09000 * 109.47052 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46652 * 299.99678 * 1 2 3 30 30 H 1.08997 * 109.47251 * 60.00439 * 1 2 3 31 31 H 0.97002 * 119.99523 * 180.02562 * 7 6 4 32 32 H 0.97000 * 120.00252 * 264.99560 * 12 2 1 33 33 H 1.08999 * 109.46713 * 179.97438 * 16 15 13 34 34 H 1.08994 * 109.47072 * 300.00006 * 16 15 13 35 35 H 1.09000 * 109.47155 * 60.00368 * 16 15 13 36 36 H 0.96694 * 113.99661 * 299.99859 * 17 15 13 37 37 H 1.08001 * 119.99750 * 359.97438 * 19 18 15 38 38 H 1.08001 * 120.00233 * 179.97438 * 20 19 18 39 39 H 1.08002 * 120.00233 * 179.71720 * 21 20 19 40 40 H 1.08002 * 120.00187 * 359.97438 * 27 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2393 2.4827 7 7 0.9436 0.8303 2.6033 8 14 2.3215 -1.1202 4.0079 9 1 3.8065 -1.1209 4.0082 10 1 1.8271 -0.4198 5.2204 11 1 1.8260 -2.5201 4.0077 12 7 2.0184 -0.6907 -1.1962 13 6 2.1471 -0.0183 -2.3572 14 8 1.8582 1.1584 -2.4117 15 6 2.6488 -0.7288 -3.5878 16 6 1.4802 -1.4283 -4.2849 17 8 3.6285 -1.6988 -3.2116 18 6 3.2685 0.2723 -4.5284 19 6 2.4755 1.2176 -5.1522 20 6 3.0437 2.1354 -6.0153 21 6 4.4043 2.1051 -6.2588 22 6 5.1979 1.1638 -5.6307 23 6 6.6819 1.1347 -5.8913 24 9 6.9478 0.2979 -6.9804 25 9 7.1307 2.4286 -6.1769 26 9 7.3450 0.6506 -4.7585 27 6 4.6294 0.2454 -4.7677 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 0.7096 1.1618 3.4844 32 1 2.2491 -1.6318 -1.1526 33 1 1.8431 -1.9418 -5.1752 34 1 1.0321 -2.1524 -3.6046 35 1 0.7329 -0.6885 -4.5720 36 1 4.3997 -1.3254 -2.7633 37 1 1.4119 1.2382 -4.9658 38 1 2.4242 2.8736 -6.5030 39 1 4.8476 2.8195 -6.9367 40 1 5.2490 -0.4929 -4.2803 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000754849591.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:52:39 Heat of formation + Delta-G solvation = -215.345104 kcal Electronic energy + Delta-G solvation = -28874.460385 eV Core-core repulsion = 24239.142052 eV Total energy + Delta-G solvation = -4635.318333 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.118 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -50.29901 -47.81134 -47.76465 -40.57888 -38.71167 -36.73457 -34.95231 -32.84006 -32.37356 -31.55086 -30.01472 -28.76881 -26.12211 -25.31375 -24.59428 -22.61353 -22.22134 -20.64968 -19.53545 -18.72618 -18.62364 -18.51440 -18.14244 -16.55950 -16.19776 -15.62984 -15.61212 -15.17181 -14.74673 -14.64097 -14.59771 -14.42277 -14.25582 -14.16072 -13.92007 -13.89139 -13.55530 -13.05472 -12.99315 -12.91867 -12.47929 -12.44650 -12.26378 -12.12857 -11.74538 -11.62603 -11.36482 -11.15069 -10.99737 -10.85597 -10.74694 -10.37385 -10.27936 -9.32727 -9.24540 -9.12525 -8.81379 -8.59382 -8.01932 -6.16870 -4.26584 0.81488 1.05042 2.50917 3.09058 3.23429 3.26933 3.28935 3.30803 3.55638 3.79572 3.95038 4.06273 4.28454 4.32040 4.41659 4.65586 4.82995 4.97476 5.11018 5.15488 5.23679 5.28673 5.48292 5.60366 5.67916 5.70377 5.92958 6.00555 6.16621 6.29020 6.57821 6.74705 6.88203 7.06876 7.28025 7.35191 7.51039 7.64135 7.84184 8.08458 8.55353 8.69786 8.97949 9.40983 10.89003 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.016308 B = 0.003142 C = 0.002925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.552477 B = 8908.697199 C = 9568.788426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.264 3.736 3 H 0.048 0.952 4 C -0.536 4.536 5 H 0.062 0.938 6 C 0.067 3.933 7 N -0.884 5.884 8 Si 0.902 3.098 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.694 5.694 13 C 0.479 3.521 14 O -0.543 6.543 15 C 0.157 3.843 16 C -0.132 4.132 17 O -0.544 6.544 18 C -0.097 4.097 19 C -0.044 4.044 20 C -0.123 4.123 21 C -0.071 4.071 22 C -0.188 4.188 23 C 0.510 3.490 24 F -0.179 7.179 25 F -0.178 7.178 26 F -0.176 7.176 27 C -0.061 4.061 28 H 0.027 0.973 29 H 0.091 0.909 30 H 0.014 0.986 31 H 0.265 0.735 32 H 0.395 0.605 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.383 0.617 37 H 0.136 0.864 38 H 0.136 0.864 39 H 0.134 0.866 40 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.032 -1.295 -18.531 19.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.162 3.838 3 H 0.066 0.934 4 C -0.574 4.574 5 H 0.080 0.920 6 C -0.136 4.136 7 N -0.521 5.521 8 Si 0.730 3.270 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.201 1.201 12 N -0.342 5.342 13 C 0.261 3.739 14 O -0.422 6.422 15 C 0.112 3.888 16 C -0.190 4.190 17 O -0.351 6.351 18 C -0.098 4.098 19 C -0.062 4.062 20 C -0.141 4.141 21 C -0.089 4.089 22 C -0.190 4.190 23 C 0.456 3.544 24 F -0.160 7.160 25 F -0.160 7.160 26 F -0.158 7.158 27 C -0.079 4.079 28 H 0.046 0.954 29 H 0.109 0.891 30 H 0.033 0.967 31 H 0.075 0.925 32 H 0.228 0.772 33 H 0.092 0.908 34 H 0.095 0.905 35 H 0.097 0.903 36 H 0.232 0.768 37 H 0.154 0.846 38 H 0.154 0.846 39 H 0.152 0.848 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 5.343 -0.736 -18.647 19.411 hybrid contribution 1.115 -0.444 1.180 1.683 sum 6.458 -1.180 -17.467 18.660 Atomic orbital electron populations 1.22075 0.98324 0.99201 1.00927 1.18796 0.91126 0.93946 0.79918 0.93380 1.21172 1.32677 1.13324 0.90256 0.92022 1.24882 0.94736 0.94920 0.99074 1.69889 1.35755 1.22380 1.24069 0.86494 0.79206 0.79612 0.81718 1.20136 1.21114 1.20100 1.46536 1.63562 1.14009 1.10051 1.20816 0.80127 0.87675 0.85302 1.90683 1.51348 1.15554 1.84609 1.20308 0.89749 0.87135 0.91583 1.21749 0.95058 1.01164 1.00989 1.86556 1.33364 1.35219 1.79959 1.20055 0.93286 0.97921 0.98570 1.21238 1.00913 0.91898 0.92153 1.21135 0.94299 0.99497 0.99129 1.20927 0.94038 0.96298 0.97635 1.19812 0.90975 1.02645 1.05542 1.18290 0.88402 0.73561 0.74132 1.93216 1.95093 1.72041 1.55636 1.93183 1.90902 1.38369 1.93518 1.93200 1.83043 1.88083 1.51429 1.20651 0.94815 0.96783 0.95662 0.95374 0.89065 0.96691 0.92471 0.77160 0.90755 0.90544 0.90332 0.76761 0.84591 0.84633 0.84847 0.84470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.54 9.26 37.16 0.34 -3.20 16 2 C 0.26 6.50 2.56 -69.08 -0.18 6.33 16 3 H 0.05 1.38 7.58 -51.93 -0.39 0.98 16 4 C -0.54 -13.91 8.73 -34.44 -0.30 -14.21 16 5 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 7 N -0.88 -24.49 11.32 55.43 0.63 -23.86 16 8 Si 0.90 20.37 29.54 -169.99 -5.02 15.35 16 9 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 10 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 12 N -0.69 -13.82 4.98 -54.93 -0.27 -14.09 16 13 C 0.48 8.87 6.65 -10.98 -0.07 8.80 16 14 O -0.54 -11.92 14.87 5.56 0.08 -11.84 16 15 C 0.16 2.19 1.15 -92.92 -0.11 2.08 16 16 C -0.13 -1.57 8.55 37.16 0.32 -1.25 16 17 O -0.54 -6.93 11.52 -35.23 -0.41 -7.33 16 18 C -0.10 -1.30 4.56 -104.62 -0.48 -1.78 16 19 C -0.04 -0.55 8.01 -39.58 -0.32 -0.87 16 20 C -0.12 -1.30 10.05 -39.59 -0.40 -1.70 16 21 C -0.07 -0.75 9.40 -39.58 -0.37 -1.13 16 22 C -0.19 -2.23 5.45 -104.62 -0.57 -2.80 16 23 C 0.51 5.86 3.36 36.01 0.12 5.98 16 24 F -0.18 -2.04 17.30 2.25 0.04 -2.00 16 25 F -0.18 -2.04 16.47 2.25 0.04 -2.00 16 26 F -0.18 -2.14 16.46 2.25 0.04 -2.10 16 27 C -0.06 -0.76 8.59 -39.58 -0.34 -1.10 16 28 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.09 2.41 6.07 -51.93 -0.32 2.09 16 30 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 32 H 0.39 7.08 7.98 -40.82 -0.33 6.76 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.08 0.87 7.01 -51.93 -0.36 0.51 16 36 H 0.38 4.15 7.75 45.56 0.35 4.50 16 37 H 0.14 1.66 6.98 -52.49 -0.37 1.30 16 38 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 39 H 0.13 1.13 7.61 -52.49 -0.40 0.73 16 40 H 0.14 1.51 5.98 -52.49 -0.31 1.19 16 LS Contribution 349.01 15.07 5.26 5.26 Total: -1.00 -30.02 349.01 -5.84 -35.86 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: -3.78 Total: 9.90 kcal Atomic # 6 Polarization: -0.71 SS G_CDS: -2.44 Total: -3.15 kcal Atomic # 7 Polarization: -38.31 SS G_CDS: 0.35 Total: -37.96 kcal Atomic # 8 Polarization: -18.84 SS G_CDS: -0.32 Total: -19.17 kcal Atomic # 9 Polarization: -6.22 SS G_CDS: 0.11 Total: -6.10 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.02 -5.84 -35.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754849591.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -179.483 kcal (2) G-P(sol) polarization free energy of solvation -30.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -209.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -215.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds