Wall clock time and date at job start Tue Mar 31 2020 17:52:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47052 * 2 1 4 4 C 1.50693 * 109.47376 * 119.99861 * 2 1 3 5 5 H 1.08009 * 119.99905 * 119.99765 * 4 2 1 6 6 C 1.37877 * 119.99988 * 300.00185 * 4 2 1 7 7 N 1.31515 * 120.00009 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 120.00062 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47471 * 59.99742 * 8 6 4 10 10 H 1.48494 * 109.47346 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.47195 * 300.00029 * 8 6 4 12 12 N 1.46504 * 109.47074 * 239.99843 * 2 1 3 13 13 C 1.34782 * 119.99690 * 84.99999 * 12 2 1 14 14 O 1.21280 * 119.99994 * 359.97438 * 13 12 2 15 15 C 1.50698 * 119.99651 * 180.02562 * 13 12 2 16 16 C 1.53002 * 109.47144 * 84.72054 * 15 13 12 17 17 O 1.42904 * 109.47205 * 324.72220 * 15 13 12 18 18 C 1.50702 * 109.47090 * 204.72193 * 15 13 12 19 19 C 1.38259 * 119.99934 * 292.43004 * 18 15 13 20 20 C 1.38208 * 120.00032 * 180.02562 * 19 18 15 21 21 C 1.38256 * 120.00055 * 0.24750 * 20 19 18 22 22 C 1.38216 * 119.99964 * 359.47673 * 21 20 19 23 23 C 1.50700 * 120.00359 * 180.27237 * 22 21 20 24 24 F 1.39894 * 109.47159 * 270.27766 * 23 22 21 25 25 F 1.39902 * 109.46776 * 30.27708 * 23 22 21 26 26 F 1.39897 * 109.47391 * 150.27347 * 23 22 21 27 27 C 1.38209 * 120.00184 * 112.44880 * 18 15 13 28 28 H 1.09000 * 109.47052 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46652 * 299.99678 * 1 2 3 30 30 H 1.08997 * 109.47251 * 60.00439 * 1 2 3 31 31 H 0.97002 * 119.99523 * 180.02562 * 7 6 4 32 32 H 0.97000 * 120.00252 * 264.99560 * 12 2 1 33 33 H 1.08999 * 109.46713 * 179.97438 * 16 15 13 34 34 H 1.08994 * 109.47072 * 300.00006 * 16 15 13 35 35 H 1.09000 * 109.47155 * 60.00368 * 16 15 13 36 36 H 0.96694 * 113.99661 * 299.99859 * 17 15 13 37 37 H 1.08001 * 119.99750 * 359.97438 * 19 18 15 38 38 H 1.08001 * 120.00233 * 179.97438 * 20 19 18 39 39 H 1.08002 * 120.00233 * 179.71720 * 21 20 19 40 40 H 1.08002 * 120.00187 * 359.97438 * 27 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2393 2.4827 7 7 0.9436 0.8303 2.6033 8 14 2.3215 -1.1202 4.0079 9 1 3.8065 -1.1209 4.0082 10 1 1.8271 -0.4198 5.2204 11 1 1.8260 -2.5201 4.0077 12 7 2.0184 -0.6907 -1.1962 13 6 2.1471 -0.0183 -2.3572 14 8 1.8582 1.1584 -2.4117 15 6 2.6488 -0.7288 -3.5878 16 6 1.4802 -1.4283 -4.2849 17 8 3.6285 -1.6988 -3.2116 18 6 3.2685 0.2723 -4.5284 19 6 2.4755 1.2176 -5.1522 20 6 3.0437 2.1354 -6.0153 21 6 4.4043 2.1051 -6.2588 22 6 5.1979 1.1638 -5.6307 23 6 6.6819 1.1347 -5.8913 24 9 6.9478 0.2979 -6.9804 25 9 7.1307 2.4286 -6.1769 26 9 7.3450 0.6506 -4.7585 27 6 4.6294 0.2454 -4.7677 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 0.7096 1.1618 3.4844 32 1 2.2491 -1.6318 -1.1526 33 1 1.8431 -1.9418 -5.1752 34 1 1.0321 -2.1524 -3.6046 35 1 0.7329 -0.6885 -4.5720 36 1 4.3997 -1.3254 -2.7633 37 1 1.4119 1.2382 -4.9658 38 1 2.4242 2.8736 -6.5030 39 1 4.8476 2.8195 -6.9367 40 1 5.2490 -0.4929 -4.2803 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000754849591.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:52:38 Heat of formation + Delta-G solvation = -234.846600 kcal Electronic energy + Delta-G solvation = -28875.306034 eV Core-core repulsion = 24239.142052 eV Total energy + Delta-G solvation = -4636.163981 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.118 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -51.20830 -48.72783 -48.66928 -41.74390 -39.94665 -37.91309 -36.75976 -34.30282 -33.79047 -32.46081 -31.27142 -30.34620 -27.34603 -27.02350 -25.73454 -23.86484 -23.23309 -22.11110 -21.04377 -19.74075 -19.60251 -19.51808 -19.36367 -18.04284 -17.33454 -17.24271 -16.69266 -16.45110 -16.31947 -15.86409 -15.57709 -15.46574 -15.19101 -15.14076 -15.03137 -14.83244 -14.79048 -14.50465 -14.22466 -13.98860 -13.83842 -13.75752 -13.39104 -13.21517 -13.09157 -13.00688 -12.84985 -12.75153 -12.65940 -12.27463 -12.24253 -12.15575 -11.85970 -11.12946 -10.63700 -10.50247 -10.21584 -9.93842 -9.78166 -8.18402 -6.35796 -0.09877 0.14708 1.45195 1.46541 1.54345 1.60190 1.63268 2.20144 2.40883 2.61564 2.69057 2.95968 3.02417 3.12254 3.38177 3.39928 3.79806 3.83684 3.93758 4.06997 4.19196 4.39821 4.56935 4.71337 4.72430 4.77300 4.80565 4.91360 5.03995 5.08248 5.10838 5.27324 5.36930 5.41526 5.58570 5.66678 5.70730 5.86632 6.08985 6.35776 6.71296 6.91473 7.30007 7.46998 8.87374 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.016308 B = 0.003142 C = 0.002925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.552477 B = 8908.697199 C = 9568.788426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.271 3.729 3 H 0.000 1.000 4 C -0.549 4.549 5 H 0.072 0.928 6 C 0.017 3.983 7 N -0.916 5.916 8 Si 0.970 3.030 9 H -0.271 1.271 10 H -0.286 1.286 11 H -0.265 1.265 12 N -0.692 5.692 13 C 0.477 3.523 14 O -0.579 6.579 15 C 0.173 3.827 16 C -0.132 4.132 17 O -0.541 6.541 18 C -0.116 4.116 19 C -0.058 4.058 20 C -0.120 4.120 21 C -0.068 4.068 22 C -0.198 4.198 23 C 0.515 3.485 24 F -0.178 7.178 25 F -0.177 7.177 26 F -0.181 7.181 27 C -0.069 4.069 28 H 0.039 0.961 29 H 0.066 0.934 30 H 0.015 0.985 31 H 0.265 0.735 32 H 0.406 0.594 33 H 0.094 0.906 34 H 0.075 0.925 35 H 0.083 0.917 36 H 0.391 0.609 37 H 0.134 0.866 38 H 0.164 0.836 39 H 0.158 0.842 40 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.803 -2.311 -19.611 20.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.168 3.832 3 H 0.018 0.982 4 C -0.587 4.587 5 H 0.090 0.910 6 C -0.183 4.183 7 N -0.554 5.554 8 Si 0.794 3.206 9 H -0.196 1.196 10 H -0.212 1.212 11 H -0.189 1.189 12 N -0.341 5.341 13 C 0.261 3.739 14 O -0.460 6.460 15 C 0.128 3.872 16 C -0.190 4.190 17 O -0.349 6.349 18 C -0.117 4.117 19 C -0.076 4.076 20 C -0.137 4.137 21 C -0.086 4.086 22 C -0.199 4.199 23 C 0.461 3.539 24 F -0.159 7.159 25 F -0.159 7.159 26 F -0.163 7.163 27 C -0.087 4.087 28 H 0.058 0.942 29 H 0.085 0.915 30 H 0.035 0.965 31 H 0.075 0.925 32 H 0.242 0.758 33 H 0.113 0.887 34 H 0.094 0.906 35 H 0.101 0.899 36 H 0.241 0.759 37 H 0.152 0.848 38 H 0.182 0.818 39 H 0.175 0.825 40 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 6.135 -1.786 -19.755 20.763 hybrid contribution 0.902 -0.057 1.447 1.706 sum 7.037 -1.843 -18.308 19.700 Atomic orbital electron populations 1.21891 0.98113 0.99484 0.99733 1.18365 0.91238 0.91854 0.81771 0.98229 1.21515 1.32713 1.13599 0.90859 0.90990 1.25755 0.94827 0.95536 1.02208 1.70037 1.36910 1.23833 1.24669 0.85433 0.78661 0.78750 0.77725 1.19635 1.21189 1.18923 1.46278 1.63998 1.14415 1.09435 1.21703 0.78819 0.87312 0.86022 1.90658 1.52625 1.17405 1.85325 1.20103 0.90645 0.87259 0.89183 1.21814 0.94387 1.01226 1.01527 1.86556 1.33454 1.34877 1.79985 1.20050 0.93838 0.98514 0.99281 1.21398 1.00994 0.92404 0.92793 1.21460 0.94676 0.99279 0.98333 1.21270 0.94012 0.96040 0.97273 1.19947 0.91214 1.02973 1.05772 1.18222 0.88227 0.73534 0.73966 1.93218 1.95085 1.72035 1.55557 1.93184 1.90891 1.38304 1.93495 1.93189 1.83157 1.88167 1.51769 1.20777 0.94593 0.97318 0.95984 0.94158 0.91525 0.96547 0.92538 0.75820 0.88704 0.90625 0.89854 0.75851 0.84828 0.81827 0.82470 0.83605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.57 9.26 71.98 0.67 -5.91 16 2 C 0.27 13.68 2.56 44.24 0.11 13.80 16 3 H 0.00 -0.01 7.58 -2.39 -0.02 -0.03 16 4 C -0.55 -28.56 8.73 25.60 0.22 -28.34 16 5 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 6 C 0.02 0.90 5.30 84.65 0.45 1.35 16 7 N -0.92 -51.83 11.32 21.45 0.24 -51.58 16 8 Si 0.97 41.52 29.54 68.60 2.03 43.54 16 9 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 10 H -0.29 -12.20 7.11 99.48 0.71 -11.49 16 11 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 12 N -0.69 -27.68 4.98 -446.09 -2.22 -29.90 16 13 C 0.48 17.72 6.65 87.66 0.58 18.31 16 14 O -0.58 -25.98 14.87 -3.03 -0.05 -26.03 16 15 C 0.17 4.65 1.15 -12.29 -0.01 4.63 16 16 C -0.13 -2.93 8.55 71.98 0.62 -2.31 16 17 O -0.54 -12.98 11.52 -148.98 -1.72 -14.70 16 18 C -0.12 -2.97 4.56 -19.87 -0.09 -3.06 16 19 C -0.06 -1.39 8.01 22.27 0.18 -1.21 16 20 C -0.12 -2.30 10.05 22.27 0.22 -2.07 16 21 C -0.07 -1.29 9.40 22.27 0.21 -1.08 16 22 C -0.20 -4.35 5.45 -19.87 -0.11 -4.46 16 23 C 0.51 11.01 3.36 71.24 0.24 11.25 16 24 F -0.18 -3.76 17.30 44.97 0.78 -2.98 16 25 F -0.18 -3.74 16.47 44.97 0.74 -3.00 16 26 F -0.18 -4.19 16.46 44.97 0.74 -3.45 16 27 C -0.07 -1.62 8.59 22.27 0.19 -1.43 16 28 H 0.04 1.82 8.14 -2.39 -0.02 1.81 16 29 H 0.07 3.62 6.07 -2.39 -0.01 3.60 16 30 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.27 14.27 8.31 -92.71 -0.77 13.50 16 32 H 0.41 14.30 7.98 -92.71 -0.74 13.56 16 33 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.08 1.75 7.01 -2.39 -0.02 1.73 16 36 H 0.39 8.01 7.75 -74.06 -0.57 7.43 16 37 H 0.13 3.19 6.98 -2.91 -0.02 3.17 16 38 H 0.16 2.12 8.06 -2.91 -0.02 2.10 16 39 H 0.16 2.18 7.61 -2.91 -0.02 2.15 16 40 H 0.15 3.03 5.98 -2.91 -0.02 3.01 16 Total: -1.00 -65.06 349.01 3.83 -61.23 By element: Atomic # 1 Polarization: 27.61 SS G_CDS: -0.20 Total: 27.41 kcal Atomic # 6 Polarization: -4.02 SS G_CDS: 3.48 Total: -0.54 kcal Atomic # 7 Polarization: -79.51 SS G_CDS: -1.98 Total: -81.49 kcal Atomic # 8 Polarization: -38.96 SS G_CDS: -1.76 Total: -40.72 kcal Atomic # 9 Polarization: -11.70 SS G_CDS: 2.26 Total: -9.44 kcal Atomic # 14 Polarization: 41.52 SS G_CDS: 2.03 Total: 43.54 kcal Total: -65.06 3.83 -61.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754849591.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -173.617 kcal (2) G-P(sol) polarization free energy of solvation -65.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -238.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -234.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds