Wall clock time and date at job start Tue Mar 31 2020 17:37:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 O 1.42900 * 109.47243 * 6.73872 * 3 2 1 5 5 C 1.42902 * 113.99922 * 179.97438 * 4 3 2 6 6 C 1.53004 * 109.47037 * 180.02562 * 5 4 3 7 7 C 1.50692 * 109.47210 * 179.97438 * 6 5 4 8 8 O 1.20831 * 119.99969 * 0.02562 * 7 6 5 9 9 O 1.34228 * 120.00341 * 180.02562 * 7 6 5 10 10 C 1.45200 * 117.00520 * 185.08467 * 9 7 6 11 11 C 1.50697 * 109.47537 * 184.90887 * 10 9 7 12 12 O 1.21277 * 119.99690 * 355.00398 * 11 10 9 13 13 N 1.34769 * 120.00176 * 174.99618 * 11 10 9 14 14 C 1.37139 * 120.00008 * 3.38353 * 13 11 10 15 15 H 1.08003 * 120.00294 * 305.54779 * 14 13 11 16 16 C 1.38896 * 120.00327 * 125.54590 * 14 13 11 17 17 N 1.31414 * 120.00312 * 181.40619 * 16 14 13 18 18 Si 1.86800 * 119.99589 * 1.40450 * 16 14 13 19 19 H 1.48499 * 109.47248 * 95.25658 * 18 16 14 20 20 H 1.48503 * 109.47228 * 215.25511 * 18 16 14 21 21 H 1.48503 * 109.47494 * 335.25822 * 18 16 14 22 22 C 1.39785 * 120.00278 * 183.37661 * 13 11 10 23 23 C 1.38958 * 120.08276 * 171.68140 * 22 13 11 24 24 C 1.38083 * 119.92779 * 179.97438 * 23 22 13 25 25 C 1.38310 * 120.07222 * 359.97438 * 24 23 22 26 26 C 1.38303 * 120.16063 * 0.02562 * 25 24 23 27 27 C 1.38080 * 120.07621 * 359.97438 * 26 25 24 28 28 H 4.38447 * 5.44478 * 179.97438 * 4 1 2 29 29 H 1.09006 * 109.47063 * 246.73969 * 3 2 1 30 30 H 1.09000 * 109.47192 * 126.74286 * 3 2 1 31 31 H 1.08998 * 109.47032 * 60.00762 * 5 4 3 32 32 H 1.08998 * 109.47271 * 300.00275 * 5 4 3 33 33 H 1.09004 * 109.47004 * 60.00230 * 6 5 4 34 34 H 1.08998 * 109.47258 * 300.00214 * 6 5 4 35 35 H 1.08998 * 109.46937 * 64.90809 * 10 9 7 36 36 H 1.09003 * 109.46944 * 304.91016 * 10 9 7 37 37 H 0.96997 * 120.00195 * 179.97438 * 17 16 14 38 38 H 1.08002 * 120.03940 * 359.70778 * 23 22 13 39 39 H 1.07991 * 119.96600 * 179.97438 * 24 23 22 40 40 H 1.08001 * 119.91556 * 179.97438 * 25 24 23 41 41 H 1.08001 * 119.96251 * 180.02562 * 26 25 24 42 42 H 1.08002 * 120.04211 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1230 -1.3371 -0.1581 5 6 4.5476 -1.4484 -0.1719 6 6 4.9428 -2.9162 -0.3460 7 6 6.4450 -3.0336 -0.3612 8 8 7.1295 -2.0447 -0.2443 9 8 7.0229 -4.2366 -0.5046 10 6 8.4699 -4.2900 -0.3967 11 6 8.9453 -5.6870 -0.7024 12 8 8.1399 -6.5731 -0.8944 13 7 10.2654 -5.9515 -0.7625 14 6 11.1759 -4.9664 -0.4775 15 1 11.1355 -4.0247 -1.0048 16 6 12.1500 -5.1795 0.4894 17 7 13.0051 -4.2256 0.7822 18 14 12.2444 -6.8223 1.3737 19 1 13.2380 -7.6930 0.6957 20 1 12.6584 -6.6028 2.7828 21 1 10.9118 -7.4770 1.3455 22 6 10.7067 -7.2301 -1.1153 23 6 12.0572 -7.4617 -1.3466 24 6 12.4896 -8.7261 -1.6944 25 6 11.5803 -9.7616 -1.8122 26 6 10.2354 -9.5348 -1.5827 27 6 9.7960 -8.2730 -1.2346 28 1 -1.0498 -0.0005 0.0001 29 1 3.0092 0.4067 0.9442 30 1 3.0091 0.6156 -0.8235 31 1 4.9505 -1.0724 0.7685 32 1 4.9497 -0.8636 -0.9992 33 1 4.5399 -3.2919 -1.2865 34 1 4.5406 -3.5013 0.4811 35 1 8.7690 -4.0178 0.6155 36 1 8.9132 -3.5918 -1.1067 37 1 13.6852 -4.3744 1.4576 38 1 12.7673 -6.6527 -1.2586 39 1 13.5390 -8.9067 -1.8747 40 1 11.9213 -10.7495 -2.0847 41 1 9.5282 -10.3458 -1.6752 42 1 8.7456 -8.0964 -1.0560 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000756302280.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:37:42 Heat of formation + Delta-G solvation = -51.492237 kcal Electronic energy + Delta-G solvation = -27047.408517 eV Core-core repulsion = 22961.052118 eV Total energy + Delta-G solvation = -4086.356399 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 4.74 seconds Orbital eigenvalues (eV) -40.57878 -39.98440 -38.45177 -37.66359 -36.22800 -35.24187 -33.81950 -32.33639 -31.96061 -30.22282 -29.97151 -27.86063 -27.13556 -25.36706 -24.17422 -22.16573 -21.49924 -20.59539 -19.63163 -18.79824 -18.32015 -17.87756 -16.96351 -16.70384 -16.41091 -16.22949 -15.85371 -15.81652 -15.37170 -15.15745 -14.78521 -14.13994 -13.95807 -13.77832 -13.39768 -13.00663 -12.97928 -12.91047 -12.75458 -12.52055 -12.20461 -12.02126 -11.88180 -11.71424 -11.43398 -11.08556 -10.89720 -10.79271 -10.73934 -10.49188 -10.43933 -10.35194 -10.16849 -9.89994 -9.50553 -9.10206 -8.54745 -8.10891 -7.18881 -6.65826 -4.65058 1.93723 2.02698 2.08520 2.26107 2.45298 2.60588 3.08090 3.18122 3.27409 3.34573 3.58609 3.98406 4.04542 4.27047 4.50321 4.59166 4.73904 4.75147 4.88663 5.03429 5.05119 5.23520 5.27469 5.51317 5.52919 5.55163 5.56394 5.63354 5.67335 5.78486 5.84120 6.21077 6.30888 6.45175 6.58287 6.72163 6.73249 7.08530 7.15003 7.20724 7.21695 7.27107 7.61890 7.80694 7.84642 8.05774 8.62355 8.91322 9.18077 10.35780 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.020150 B = 0.002374 C = 0.002188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.271589 B =11789.861818 C =12793.528265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.192 4.192 3 C 0.174 3.826 4 O -0.384 6.384 5 C 0.074 3.926 6 C -0.112 4.112 7 C 0.466 3.534 8 O -0.509 6.509 9 O -0.336 6.336 10 C 0.072 3.928 11 C 0.501 3.499 12 O -0.540 6.540 13 N -0.402 5.402 14 C -0.381 4.381 15 H 0.112 0.888 16 C 0.085 3.915 17 N -0.851 5.851 18 Si 0.873 3.127 19 H -0.252 1.252 20 H -0.289 1.289 21 H -0.257 1.257 22 C 0.159 3.841 23 C -0.158 4.158 24 C -0.105 4.105 25 C -0.169 4.169 26 C -0.108 4.108 27 C -0.183 4.183 28 H 0.222 0.778 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.116 0.884 34 H 0.116 0.884 35 H 0.108 0.892 36 H 0.103 0.897 37 H 0.281 0.719 38 H 0.140 0.860 39 H 0.114 0.886 40 H 0.109 0.891 41 H 0.114 0.886 42 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.640 3.287 -1.194 14.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.192 4.192 3 C 0.098 3.902 4 O -0.304 6.304 5 C -0.002 4.002 6 C -0.150 4.150 7 C 0.309 3.691 8 O -0.397 6.397 9 O -0.252 6.252 10 C -0.004 4.004 11 C 0.292 3.708 12 O -0.422 6.422 13 N -0.113 5.113 14 C -0.507 4.507 15 H 0.129 0.871 16 C -0.126 4.126 17 N -0.483 5.483 18 Si 0.699 3.301 19 H -0.177 1.177 20 H -0.216 1.216 21 H -0.181 1.181 22 C 0.063 3.937 23 C -0.179 4.179 24 C -0.123 4.123 25 C -0.188 4.188 26 C -0.127 4.127 27 C -0.202 4.202 28 H 0.238 0.762 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.134 0.866 34 H 0.134 0.866 35 H 0.126 0.874 36 H 0.121 0.879 37 H 0.092 0.908 38 H 0.157 0.843 39 H 0.133 0.867 40 H 0.128 0.872 41 H 0.132 0.868 42 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -13.752 3.156 -1.154 14.156 hybrid contribution 0.693 -0.376 0.544 0.957 sum -13.059 2.781 -0.610 13.366 Atomic orbital electron populations 1.24979 0.95901 0.97540 1.00855 1.22554 0.93904 1.02143 1.00630 1.19064 0.84620 0.84768 1.01716 1.87862 1.21360 1.26384 1.94759 1.22208 0.80104 0.95446 1.02462 1.21054 0.88443 0.98077 1.07376 1.23253 0.91540 0.81437 0.72893 1.90707 1.65503 1.38167 1.45335 1.86449 1.24181 1.32670 1.81858 1.22608 0.75700 0.96784 1.05341 1.20215 0.82536 0.89276 0.78759 1.90264 1.54625 1.45930 1.51394 1.41239 1.04734 1.08481 1.56838 1.19087 1.12537 0.96211 1.22840 0.87055 1.25495 0.94810 0.97807 0.94534 1.69642 1.16002 1.32430 1.30249 0.86955 0.81183 0.83324 0.78642 1.17712 1.21604 1.18051 1.18441 0.93228 0.86153 0.95890 1.21029 0.95133 0.98122 1.03588 1.20827 0.98919 0.92682 0.99906 1.20941 0.93804 0.98517 1.05565 1.21026 0.95231 0.96675 0.99751 1.22766 1.03611 0.91432 1.02429 0.76151 0.90479 0.90487 0.91604 0.91628 0.86629 0.86582 0.87400 0.87905 0.90823 0.84275 0.86748 0.87241 0.86815 0.80473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.39 19.25 29.55 0.57 -0.82 16 2 C -0.19 -1.83 13.73 -37.12 -0.51 -2.33 16 3 C 0.17 1.47 6.41 34.37 0.22 1.69 16 4 O -0.38 -4.04 10.30 -35.23 -0.36 -4.41 16 5 C 0.07 0.74 5.23 37.16 0.19 0.93 16 6 C -0.11 -1.19 6.18 -27.88 -0.17 -1.36 16 7 C 0.47 6.92 7.95 36.00 0.29 7.20 16 8 O -0.51 -8.68 15.64 -18.75 -0.29 -8.97 16 9 O -0.34 -5.89 9.76 -45.88 -0.45 -6.34 16 10 C 0.07 1.39 4.87 36.00 0.18 1.56 16 11 C 0.50 11.18 7.65 -10.99 -0.08 11.09 16 12 O -0.54 -12.53 12.92 -14.05 -0.18 -12.71 16 13 N -0.40 -9.49 2.30 -58.98 -0.14 -9.63 16 14 C -0.38 -9.42 8.01 -14.93 -0.12 -9.54 16 15 H 0.11 2.86 7.70 -52.48 -0.40 2.45 16 16 C 0.08 2.14 4.61 -17.49 -0.08 2.06 16 17 N -0.85 -22.34 13.96 55.49 0.77 -21.56 16 18 Si 0.87 20.44 23.84 -169.99 -4.05 16.38 16 19 H -0.25 -5.67 6.14 56.52 0.35 -5.32 16 20 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.26 -6.32 6.48 56.52 0.37 -5.95 16 22 C 0.16 3.66 4.12 -83.70 -0.35 3.32 16 23 C -0.16 -3.47 5.57 -39.37 -0.22 -3.69 16 24 C -0.10 -1.98 9.76 -39.61 -0.39 -2.37 16 25 C -0.17 -2.97 10.04 -39.53 -0.40 -3.37 16 26 C -0.11 -2.00 10.04 -39.62 -0.40 -2.40 16 27 C -0.18 -3.96 9.03 -39.37 -0.36 -4.31 16 28 H 0.22 0.90 7.80 -54.10 -0.42 0.48 16 29 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.64 8.10 -51.93 -0.42 0.22 16 32 H 0.07 0.63 8.10 -51.93 -0.42 0.21 16 33 H 0.12 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.12 1.10 8.14 -51.93 -0.42 0.67 16 35 H 0.11 2.06 8.14 -51.93 -0.42 1.64 16 36 H 0.10 1.95 7.57 -51.93 -0.39 1.55 16 37 H 0.28 6.92 8.31 -40.82 -0.34 6.58 16 38 H 0.14 3.20 5.70 -52.49 -0.30 2.90 16 39 H 0.11 1.86 8.06 -52.49 -0.42 1.43 16 40 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 41 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 42 H 0.18 3.98 4.58 -55.99 -0.26 3.73 16 LS Contribution 363.66 15.07 5.48 5.48 Total: -1.00 -30.44 363.66 -6.07 -36.51 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: -5.22 Total: 7.58 kcal Atomic # 6 Polarization: -0.72 SS G_CDS: -1.62 Total: -2.34 kcal Atomic # 7 Polarization: -31.83 SS G_CDS: 0.64 Total: -31.19 kcal Atomic # 8 Polarization: -31.14 SS G_CDS: -1.29 Total: -32.42 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -4.05 Total: 16.38 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.44 -6.07 -36.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756302280.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.984 kcal (2) G-P(sol) polarization free energy of solvation -30.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.74 seconds